Array 1 427423-426433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFH010000001.1 Pectobacterium brasiliense strain IPO:3844 NAK:382 JGAR:12 FMEOKLKJ_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 427422 27 85.7 32 T.........T-..G............. GATACGCTGAGCATGGCGCAGGCGGGGTTATT C,GA,T [427405,427416,427419] 427359 28 100.0 32 ............................ AGCCATGATTTTAACCCCCGTAAATTCCGCCG 427299 28 100.0 32 ............................ TGGGCGACAAACAGCGCATGGCTTCCATAAAC 427239 28 100.0 32 ............................ ATAAACGAGCGGAGTGCGCACCTCTACGTAAT 427179 28 96.4 32 ...........G................ GCACAGAGTTACACCAGCAATCTGTACTTTGA 427119 28 96.4 32 ...........T................ ACGGCAATGCGTAAAGGCGGTGCCGTAAACAC 427059 28 96.4 32 ...........T................ TGATTGATCTGATAAACAGTAACCCAGCCGGC 426999 28 96.4 32 .............C.............. GTGGCCGGGACAACATGCCTTACGGAATGATC 426939 28 92.9 32 .........T.T................ GCCGCACGGCCATTCGGCAACCGCGAAGTCTG 426879 28 96.4 32 ...........G................ GAATGACCGACAATCATAACTGAACAGGAGTC 426819 28 92.9 32 ...........G.....T.......... CAAGCTCCTTGATTCAAATCAGCTTTTTGCGG 426759 28 92.9 32 ...A.........C.............. TGTTCTGGAAATCCCGCGCGGCGCAGGCCAAA 426699 28 85.7 32 ...........TTC......T....... ACAGAATAACGAGCCGGTGCTCGAAGCTGCGC 426639 28 89.3 32 .............C.T...A........ GCTCAACGCGCACATCCGTGATTTCCAGCAAA 426579 28 96.4 32 ...........G................ CGTTGAACATCGTCACGGTGCTATCCAGAACG 426519 28 85.7 31 .........T.T.C..........T... CAAAGAATTGTCGGGTGTGGTTGCGGCCGTC 426460 28 78.6 0 ...........T.C......T...TCC. | ========== ====== ====== ====== ============================ ================================ ================== 17 28 93.1 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TAATATTTACGAATGATGCTGTGGATTTTCTAAATAGCTACCCATGGCCTGGGAATGTGCGTGAGTTACAAGCCATCATACATAGATTGGTTGTTTTGCTTGATATCGATGTCGTTGATAAGAATAGCCTTATATCAATCGGTAAAATAGATTCTGCTCATACTAAAAATTTGGTTTGCAGTTCAGGGATGAAATTCGAGGGAGATGAGACTGATTTGTTGAAAAAACAGGAAAGGATTCTTATCGATAGCGTTATGAAAAACACTAACGGCGATCGAGCGAAAGCTTCCGTCATTCTTGGTATAAGCCCAACAACCCTTTGGCGTAAAATCAAAGAGCTGAACATCGGTAGTTGATGTCTACACTCTTAAACGTCAGTAATTGATGCGCGGCCTACCCACGGTGAATGCTGATTACTGGTATGGGCCTCGGTTCGATCATTTCTAAGCTGCCTACACGGCAGTGAACTGTCCTTGCGAACCTTCTCGATGTAATCGACA # Right flank : CGCCTTAAGTGCCATTATCTGGCTATTATCGAGGTAACACTATCGGCAGGTTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCCTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTATGGGGAATGAAAAATTGCGGATTGAACGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTACAGACGTTATGCACCCCAAATCCCAATCAATCGTGGAAAACGGCCATATTTGGCTGTACCGATCCTGTT # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1724096-1726569 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFH010000001.1 Pectobacterium brasiliense strain IPO:3844 NAK:382 JGAR:12 FMEOKLKJ_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1724096 29 100.0 32 ............................. CGACGTTAATACTGATCTAGCTGCCCAGCAGA 1724157 29 100.0 33 ............................. TCCTCCCAATGTTTTAACGGCTTGATATCAGCC 1724219 29 100.0 32 ............................. ATTATGCTCACCCAGCCTGCGATAGATGCTCT 1724280 29 100.0 32 ............................. TTCATCTACGCTAACGCCATACATACTGGCAA 1724341 29 100.0 32 ............................. GGAATACCCTCTACGGAGTGACGAACTACGCG 1724402 29 100.0 32 ............................. TGCCGGTAATAGTCGCCGTAGCCTGGGTTCCG 1724463 29 100.0 32 ............................. CAGCCGATCCGCGCATTCTGCATGTGCGTATG 1724524 29 100.0 32 ............................. CATCCAACCCAAATCCTCTACTTCCAGCCCGT 1724585 29 100.0 32 ............................. GCCTCAGAATCAACGTATCCCCTGACCGGATG 1724646 29 100.0 32 ............................. AACTGGACTACGAGGCGATTTACACCGAGCGC 1724707 29 100.0 33 ............................. CTGTATCCGCAAGCGACAGAATCACAGAAACCC 1724769 29 100.0 32 ............................. TCCGTCAATCTGGCCCATGTTGGCCCCGATCC 1724830 29 100.0 32 ............................. TGCCATGCTACAACCGCAATTAGCACGTCTAC 1724891 29 100.0 33 ............................. CACAAGGAAGTGCACACCGGGTGGATGGGTAAC 1724953 29 100.0 32 ............................. TGTTTTTTGCCTGTAACTGGTGGTAATCCGTA 1725014 29 100.0 32 ............................. GATTAGGCGACAAAGGGGGCGGCATTTCCAAT 1725075 29 100.0 33 ............................. TGGTTCAAATTCGCCGGTTTGCTGCTGCTGCGT 1725137 29 100.0 32 ............................. CATGGCGCTCAGGTCGAGCCTGCTACCCCCGT 1725198 29 100.0 32 ............................. CGCCTTCATCGCTCCGATGTTCGCCAGAGATG 1725259 29 96.6 32 .............T............... CGGTCTGAATCAGACATCATCCAGCACCTACA 1725320 29 96.6 32 ........T.................... CGGATTGACGAGGTGTTGATTCGTTCGACGCT 1725381 29 93.1 32 .A.......A................... TAAACCCCTTCATGGTCATCAGCCGGAAACCC 1725442 29 100.0 32 ............................. AACAACGCCATTCAATTCATCCAGCAGTTACC 1725503 29 100.0 32 ............................. ATGACCTGATCGGCGACAGCAAGCCAAAACGC 1725564 29 100.0 32 ............................. CCCATCGATCAGCGTGGCGTCTTCGGTTACAT 1725625 29 100.0 32 ............................. TCATTAATCATTGAGATGCGTCCGAACATGCC 1725686 29 96.6 32 ............T................ TTGGCGGCTTGTGGCGTATCTTGATTCATCAG 1725747 29 86.2 32 .......T..T..G.........G..... GCGATCAAAGAAGCCATTGAAAGCGGAGTGGA 1725808 29 93.1 32 A.A.......................... GGCCAAGTAGCTCCAGCCAGACAAAAAATCCA 1725869 29 96.6 32 ............G................ ACAGCTAACAGCCGTGTTATGTGCATGTTTGA 1725930 29 96.6 32 ........T.................... CGGGATGCATGGGGCGCTCAGATTGGTGCGCT 1725991 29 96.6 32 .A........................... GCCCACGGTGGGACTGATGATGACGAGAATCT 1726052 29 96.6 32 ............G................ TTACCAATGACCTGAGCCGTTTTCGCAGCATT 1726113 29 96.6 32 .............G............... CGCAAATGGAACGACAATCTACAATGTTTCAT 1726174 29 96.6 32 ...........A................. CATATTGGAAGCCATTGGCGCTTATAACGCTG 1726235 29 100.0 32 ............................. TTATTGGCGAAATCGTTCCGGGCCTTTGCTTC 1726296 29 100.0 32 ............................. CCCGACAGCAGGAGCAACACAAAGAAACCTAT 1726357 29 100.0 33 ............................. GACTGCCAGTCTGACGATCCTCCGAGCCCAGCA 1726419 29 96.6 32 .........................G... AATCGAACGGTGCCGATCTCACAGTGGCTGCA 1726480 29 96.6 32 ........T.................... CAAAGTTCATTCACTGATGGTTCATCTCCACC 1726541 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================= ================== 41 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTTTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCTCCGCGGTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCCGCACGGAACCAAATCCCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACTCACCGTTACGGTGAGGCGCTATGCCAATGAGTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGTAGTGGTGCCGTTCCTGTGGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCCGAGCTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGGCGGTTGGGACGTGAAGAGGGTTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGGGGAAGTATTCCGCCTTCCAATGTATTCCAGCCGATT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //