Array 1 1845995-1846815 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCIM01000004.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL01748 2015LSAL01748_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1845995 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 1846056 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 1846117 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 1846178 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 1846239 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 1846300 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 1846361 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 1846422 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 1846483 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 1846544 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 1846605 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 1846666 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 1846727 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1846788 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1863456-1865255 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCIM01000004.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL01748 2015LSAL01748_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1863456 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 1863517 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 1863579 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 1863640 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 1863701 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 1863762 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 1863823 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 1863884 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 1863945 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 1864006 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 1864067 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 1864128 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 1864189 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 1864250 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 1864311 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 1864372 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 1864433 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 1864494 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 1864555 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 1864616 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 1864677 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 1864738 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 1864799 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 1864860 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 1864921 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 1864982 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 1865043 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 1865104 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 1865165 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1865226 29 93.1 0 A...........T................ | A [1865252] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //