Array 1 141531-137860 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGJV01000001.1 Vagococcus penaei strain LMG 24833 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 141530 36 100.0 30 .................................... TGCTTGCTATACAGTAGCCAAGTACCACTT 141464 36 100.0 30 .................................... CAAGCAAAAATTTTGTAGTGCTAAATGTCA 141398 36 100.0 31 .................................... CCTAGTTCTGTTGCGTTTAACCACTCCTTAC 141331 36 100.0 30 .................................... GTCGAGACTCGAAATGCTTAAAGCTAACAT 141265 36 100.0 30 .................................... ACGAATATAAATAGATCGACTGTTGAGTAC 141199 36 100.0 30 .................................... TATTGATCACATTATTCCTGTAAGCAAAGG 141133 36 100.0 30 .................................... AATTCGGTTACAGCAAGTTTTTGCTGAGAA 141067 36 100.0 30 .................................... ATTTAAACGCCATTCATAACCATCTCGTCT 141001 36 100.0 30 .................................... ATGGAGTGAAGCAATTCCCAGAGTTAGCTT 140935 36 100.0 30 .................................... TCGTTGGACTTGGGGACTGATTATCACGAT 140869 36 100.0 30 .................................... AGAAAAACAACGAGTTAAAGATGTTTTAAC 140803 36 100.0 30 .................................... AAAAGATATTTAAGTCAAAGAAGCGCAGCG 140737 36 100.0 30 .................................... TTGGAGAAACTACTATCGCTAAAGGAACGT 140671 36 100.0 30 .................................... GATACCGTCCCAAGCACCTTTTAAAACTCC 140605 36 100.0 30 .................................... ATCGATAGTGCCGTCCGCATTAATTTTTAA 140539 36 100.0 30 .................................... ATTTGCTTGTCCGCCAAGACTATGAGCAAA 140473 36 100.0 30 .................................... ACGACTAAGTGAGCAAATACAAACGCTAGA 140407 36 100.0 30 .................................... TGTCCTATGCGACTGGTGGTATGGTTATGT 140341 36 100.0 30 .................................... TTACTCTTTTAGCAAACGGTAATTTTAAAC 140275 36 100.0 30 .................................... AGAGTCTCAATCAGCCATGAACGTACTAGT 140209 36 100.0 30 .................................... GGAAGAGTTGGATTTATTCCAAGATTTTGA 140143 36 100.0 30 .................................... TAACTATTGTAGCGTCAAATTTGGCTAACC 140077 36 100.0 31 .................................... TATGCGTCGATTGAGATTAGCAGTTAATATA 140010 36 100.0 30 .................................... ACGCATTTAATGGTGAAGCTACAGGAGTTG 139944 36 100.0 30 .................................... ATGTGACCGAAAATGGTTACACGTTTAGTC 139878 36 100.0 30 .................................... AACAAACACTAAACAATATCCAGCTCAATT 139812 36 100.0 30 .................................... TGTTGTAACTCAATTTGAGCTGGTGCGTAC 139746 36 100.0 30 .................................... AGAGCATTTGGAATGGAAGCTGAGCAAGCA 139680 36 100.0 30 .................................... ATGTTGGCGAGGAAATAGTCGGCATTAACA 139614 36 100.0 31 .................................... TTAACAGGAGCTACTAGAGCGACTAAAACAG 139547 36 100.0 30 .................................... AAAGACGAGGAAACAGGTGCAGCAACTGGT 139481 36 100.0 30 .................................... ATCTATTTGAGTTATCAGTTAAAGAGAAGG 139415 36 100.0 30 .................................... TTGAGCGTAAAGCTAAGATGATATCTCCGT 139349 36 100.0 30 .................................... CGAATAAACTTCTAGACGAACAAAATACTA 139283 36 100.0 30 .................................... TACTCGTCTTCGATTTCCCACACTTTAGCT 139217 36 100.0 30 .................................... TCAATTCAAAAAAGGTGATGAACCTAGTTT 139151 36 100.0 31 .................................... AAGGTGACGTGTGGTTTAAACGTTTGCCCGA 139084 36 100.0 30 .................................... TGTGAGCTCTTAGGCACTCCTACACCATTT 139018 36 100.0 30 .................................... GATTAATTGTCTAATGTTGTCATATTCTTG 138952 36 100.0 30 .................................... TGTTAATCGAGCTAGTGAAGAAGCAACGCA 138886 36 100.0 30 .................................... GCTAGCTTGCGCTTTGCTTGTGAACACTTT 138820 36 100.0 31 .................................... GCATAAACTCTACGTTAGTGCTACGACATTT 138753 36 100.0 30 .................................... CAGTTGTAGTTTTTAATTGATTCTCATAGC 138687 36 100.0 30 .................................... TGCTACATAAGGTTTGTGTTTGCGACTTCC 138621 36 100.0 30 .................................... CAACGAGATTGCAAGCATGAGTCGAAATGT 138555 36 100.0 30 .................................... TAATCCAACCGCCTGGAGTTAAACCGACAT 138489 36 100.0 30 .................................... CGTTGGGGGAGTAAGGATAGATGATAGGGA 138423 36 100.0 30 .................................... ACGTAAATTGACTAAAGAGACAGAAGGTGC 138357 36 100.0 30 .................................... TGTCTGCTCGAAAGTGCTAAATTCTGATTT 138291 36 100.0 30 .................................... CGCTCCGTACGCTGTCATACCACGTACACT 138225 36 100.0 30 .................................... TATTTTTCTACAAGTTTCTTCTGGGCATCC 138159 36 100.0 30 .................................... AAACAATAACGTCTCAATCATTGCTGACAA 138093 36 100.0 30 .................................... TTCTCGCCAATCTTCTAATCCTTCTATTTC 138027 36 100.0 30 .................................... TAGCAAAGAAACAATCGAAACTATCAATAT 137961 36 100.0 30 .................................... CATCTTTTTAGGCTTTCTAATATCTGCGTC 137895 35 80.6 0 .......................T.TA..T-..G.T | T [137882] ========== ====== ====== ====== ==================================== =============================== ================== 56 36 99.7 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : AGACACAGATTGAAGACTTGTCACTGGGGATTACGCGCCTAATTGAAGTAGAGTTACTTAATCATGAGTTAGATTTAGAACTGGACGATATTACTTTTTTAGAACTATTAAAAATCTTAGGCGTTAAGATTGAAACAAAAACAGACACACTATTTGAAAAAATGTTAGAAATTATTCAGGTTTTTAAGTACCTGTCAAAGAAAAAATTCATTGTTTTTATTAATGTCTGTTCGTATTTTAATCAAGAAGAATTAATTAAAATAAGTGAATATATTTCGTTATTTGATAGCGATGTTTTGTTTTTGGAACACTATAAAATTGAAGGCGTTAATCAATTTATTATCGACAAAGACTATTATGTTACAAGTGAAACTATGTTATAATAAACTTAAAGACTGTTCCTTGAAAAAAGAATAATCTACTAACTAAATTAGCATTCAAAAGAGACATCTTGCTATGGATGAATGGCGCGATTACGGAACCGAGAAATTTTCTGCGAG # Right flank : GATGAATGTGAGATTATTTTCACCTTCATTATCTTTTTTTGTTTATTTGTCTCATGCGGTTTGTTTTTCTTTATTAATTTTTTATTTCTCTGAATCTGATATCATTAAAAACAGTTCCTACTAGTTAAAGGGATAGAAAATGTAGTTCCTATAATAATTATGCTGTTTTTATTTTTAATTCATAATACTTTTTTATATGTTTAGTCATAACTTGTTGCTCTTTTTAGCTTTGACCTTTGTGGATAATTAAATTAAGACATAGTCTGTGTGTAAATAATTAAAAAAGGATTGATGAATCGAAAATTGATTCATCAATCCTTTAAATTATAAGTTCTTTTTTTATATATTATCTTCGCCACTGCTGTTTGCCATGTTGTTGCCTTGGTCTTGTACCGTCATAACGACAATTTTTTTGCCTGTTTTGACATGTGTTAGATTCTGACATTTGTGGTCTGCTATTGGGTTCAGAGTTAGTGTCTTGAAGTGGACAATCAGTTGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 79569-82121 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGJV01000005.1 Vagococcus penaei strain LMG 24833 5, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 79569 36 100.0 30 .................................... CGTGGACGTGGCTGGGCAGTAAATGAGTTG 79635 36 100.0 30 .................................... TGCTATTGTCATTTTGAGAAAAATTAATCA 79701 36 100.0 30 .................................... CTTTATCAATAAATGGTTTCAATACTTTTA 79767 36 100.0 34 .................................... CTGTACCTAATTTATTACCCGCGCTTTGACGTTT 79837 36 100.0 30 .................................... TTACCGAATTTCTAAAAAACAGGAGGCATA 79903 36 100.0 30 .................................... CATGTTTGCTCTTTTTTTAAAAGTGTAGAA 79969 36 100.0 30 .................................... CAAACTCCTTATTCCAGAGCCAAAAGAAAA 80035 36 100.0 30 .................................... CATGTTTGCTCTTTTTTTAAAAGTGTAGAA 80101 36 100.0 30 .................................... AGACGATGTGACGTTTGTCAAAAAAACCAA 80167 36 100.0 30 .................................... GAAAAAGTCTTAATCAAAGAAAAAATTTTA 80233 36 100.0 30 .................................... ATGGATTTACAAGCGGAATAAAAGGTATTG 80299 36 100.0 30 .................................... CAGTGATGAAAAGAACACGCTCACCTTCTG 80365 36 100.0 30 .................................... TGTAATTCCGTCAACAATTTCAATCGGAAT 80431 36 100.0 30 .................................... CGAACAGCCCAATACGTTCCTCGTTGAGAT 80497 36 100.0 30 .................................... TGATGAACGAAAACAAGTATCAGCTTCACT 80563 36 100.0 30 .................................... GCCAAAACATTTTTTAATTGAGATAATTTT 80629 36 100.0 30 .................................... ACAGCTCTGGATAGGATTGTCTTAAAAAAC 80695 36 100.0 30 .................................... GTAGCGAAGAGCAGAAGGATAACAACTTTA 80761 36 100.0 30 .................................... AATGGTGTCATCATAAACGATAAACATGTT 80827 36 100.0 30 .................................... GCCAAAACATTTTTTAATTGAGATAATTTT 80893 36 100.0 30 .................................... CGCCCGTACGTGCCGATTGCACCGCCGTAG 80959 36 100.0 30 .................................... ATGGGACGGCAAAAGTTGGGTAGAAGTGAT 81025 36 100.0 30 .................................... ATTGAGTGGTGCTTCGTCGATAATGCAAAC 81091 36 100.0 31 .................................... TCTTGATAAAAAATAATGGATAACTATTTTG 81158 36 100.0 31 .................................... ACAACCTTTTCTGTCGTCTAACTGATTTTTG 81225 36 100.0 30 .................................... CGTGTCAGGTTGTGGTAGTGGTAAATCAGT 81291 36 100.0 30 .................................... ATGGGACGGCAAAAGTTGGGTAGAAGTGAT 81357 36 100.0 30 .................................... ATTGAGTGGTGCTTCGTCGATAATGCAAAC 81423 36 100.0 31 .................................... TCTTGATAAAAAATAATGGATAACTATTTTG 81490 36 100.0 31 .................................... ACAACCTTTTCTGTCGTCTAACTGATTTTTG 81557 36 100.0 30 .................................... CGTGTCAGGTTGTGGTAGTGGTAAATCAGT 81623 36 100.0 30 .................................... AGCGGCTGGTTTTGGCTGGATAGTCGCTTC 81689 36 100.0 30 .................................... GACGGTGTGCAAATTTGGGGTGGTGGAGAC 81755 36 100.0 30 .................................... GTTTGTCAAACTCTGATTTTTGGACTCGTA 81821 36 100.0 30 .................................... GCGCTTTTCTTTTTCAAGTACGAAAATTTC 81887 36 100.0 30 .................................... GCTATCCGCCTTATGGTCAAATACATGCGC 81953 36 100.0 31 .................................... TAATCATCATCTAAAACTATGCGACTATCTA 82020 36 100.0 30 .................................... ACAACTATTTTTTTAAAATCTTGTGATATA 82086 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================== ================== 39 36 100.0 30 GTTTTACCGTTACTAAATCTTTAAGAGTACAAAAAC # Left flank : CAATTAGGCTTTAATGAATTACCTGAAAATGAGCAACAAGAATTAAAAGATTGGATGTATGACTTACTTTTCCAACTCTATGAAAATGAAGAATTATATACTGAATTACTTTATGATAAATTAGGTTGGACTGAAGAAGTAAAAACCTTCTTACGTTATAATGCCAATAAAGCCCTAATGAATTTAGGTATGGATCCATTATTCCCAGATACATCCGAGGATGTTAATCCGATTGTTATGAACGGTTTATCGACAGGTACAAGTAACCATGACTTCTTCTCGCAAGTTGGTAACGGCTACCTACTTGGTACAGTTGAAGCCATGAAAAACGATGATTACTTGATTGGTTTAGATGATTAAACTGGTTTAGATTTAATGACTCTATAAAAAAGCTCTAGCTACTACCTTATGTTGTATTTGGTAGTGACTAGAGCTTTTTAAGTGTGATTTCAATGCAAAAATGCGTTAATGTTAAGTTGCACAACTAACAATTCTTTAAT # Right flank : CCTCAAATGAACGTCTCCAAATAAAATTTTTATACCTACCTACATTAAATACGCTTCTTCTAGTTTAGTCAATACTTTTTTTGGGCTCTTAACTATTATGTCAATACCTAATAGTTTATGTAAGACATTTAATAGAAGTAATTCTTGGTCTTTCAAATAAACTTGTTCTGAGTTCATCACACCAATATACGGCATTAAGCGATACAAACTAGTAATTAGTTCATCATCTGTTAACGTCAAGGTATCTGGATAGTGACGTTCTATAGACGCCCTTAATGTTGTAAAATCTGGTAATTGCTGATACTCTTTATAAATCAATGTTGTCGCTTCAATATCATTACGCCTATAATTTAAGGGACAATACGAATCACTCAAAATAAAGACTGTCAGTAATTCTGTTTTTTGGTTGACTTTAGTCAGGTTTAGTAATAATTTTGCCAGTAAATCCTGGCGTAAAAAAGCTGTTGGTTGACTGATAAAAAGCCATGTTTGTTTAGTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACCGTTACTAAATCTTTAAGAGTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //