Array 1 42219-41923 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQH010000065.1 Calothrix parietina FACHB-288 contig65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ================================================== ================== 42218 39 100.0 45 ....................................... GTCGATGCCGTGTCTTATCATTATTAATGTGCAATAGGTCGTAGG 42134 39 100.0 50 ....................................... GTCCATGCCGTGCCCCTACTGAGCGTATCTACTGCAAACAAACTTATAAA 42045 39 100.0 45 ....................................... GTGGATGCCGTGTCTTATCATTATTAATATGCAATAGGTCGTAGG 41961 39 97.4 0 ...................................A... | ========== ====== ====== ====== ======================================= ================================================== ================== 4 39 99.3 47 GGCACGGCACAGATAAAATATCGGATTTACCGAAAGTCT # Left flank : AAAGCAATGTTGGTTTGGCGATGTCATGAATGGGGAAATGCAACATAATCAATTGGGGATAATTGTTTATACCTTTTGGCAGGCGCTTCCGCGTCGGTTTTCTCACATCGAATTAGATGCTTTTGTCGTTATGCCAAATCATGTGCATGGTATTCTCATCATCACCGATGCCGTGCCCCGGCAACCAACAGCAGAACAATTTGGTAAACCTGTTCCTGGTTCTATTCCTACAATTATTCGTGCTTTTAAATCAGCTGTTACCAAACGAATAAACCTAATGCGAAAAAGGCCATATCCTCCTATTTGGCAACGCAATTATTACGAAAGCATTATCCGGCAAGATGGATTGGATAATGTACGCCAATATATTCTCAGTAATCCTTTTGCATGGGCAGAGGACGAAGAAAACCCTTCGCATCACCCACAAGCACAACTAGATTTAGATGTATATTTTTGAACCCACATTACCTATAAAATTAGCAAATAATTTTCCCAGTAGG # Right flank : GTGGATGCCGTGCCCCTACTTAGGGTTTCTACTGCAAACAAACTTATAAAGGGTGCTACTTTTAGCTAAAAAATCGAGTCAAACTTATAAATAATCGACTCAAACTAATAAAGACTTATACTTTTAGCTAAAAAATCCAGTCAAACTTATAAATGATTGACTCAAACTAATAAAGACTTATACTTTTAGCTAAAAAATCAAGTCAAACTTATGAATAATCGACTCAAACTTATAAAAGTCGCTGTTTTTAGCTATCACCAAAACCCCCTCCCCCTGGTGTTTCTATCACAAAAACATCTCCCACTTCCATCTCAACAGTTGCAGTACTATCTAACTCTTCTTGCGTTCCATCCTGACGCTGTATCCAGTTGCATCCAACTTTTCCCGGTTCCCCACCATTTAAGCCAAAGGGAGAAACACGGCGATGATTAGAAAGAATATTCGCTGTCATCGGTTCTAAAAACTTGATGCGACGAATCACGCCATTACCACCGGAATAC # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCACGGCACAGATAAAATATCGGATTTACCGAAAGTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 24102-24946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQH010000081.1 Calothrix parietina FACHB-288 contig81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 24102 37 100.0 34 ..................................... TTGAAGATCTTTGCTTTGGAGAGTAGAGATATAG 24173 37 100.0 36 ..................................... CAATGGAGTACCAAGGAACTGCACAAATGTCTATAT 24246 37 100.0 37 ..................................... AAACTCTTTAAGATACCCTCTGACTAAATCAAAAGCA 24320 37 100.0 35 ..................................... ATTAACTGCTATGACTCCCTGCTTTAATTCCTGTA 24392 37 100.0 38 ..................................... CAATCTGGCGAAGATAAAACTAATTGAATCTCTGCGAC 24467 37 100.0 36 ..................................... CAATCTGTCCATGCTGAACGCCCTCAGAAAGTCTGA 24540 37 100.0 35 ..................................... ATACGCAAAAACTACCTAACAGGTAAGCGTGTTAC 24612 37 100.0 39 ..................................... CTCTCACCAAAGAAGCAACTGCCAAACAGCAGGGATTAG 24688 37 100.0 36 ..................................... CTCCGCCGGATACGGTTATATCTAAATCGTCATCAA 24761 37 100.0 37 ..................................... GCCTATAATCAAGGTTTAGACACCCCAGAATATTCTA 24835 37 100.0 38 ..................................... AAAATCTATTTCTGAATACATCAGCCGCCAAGAATTAA 24910 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 99.8 37 GTTTCCGCAACCAATTACCCCGCAAGGGGATTGAAAC # Left flank : GTTTGAGCTAACACCTGGGTATTTGCAACTACTTGCGCCGTTAAAACTGAATCTTCAGCCAAGCCAAAGCTTACCAATCCGCCATCAAGAAAAAAAGTAGCCAAGCAAGTAGTCAGCGCAGTCAATCCCACTCTTGGGGTTAGCATCAAGAAATTCCCCATTTTTGTTAACCAGACTTATCAGTTTTAACAATAAAATATTCATTAATAGCAGCTAGCATTACGAAAAAATACATAATTATTGATACAGGCTCGACAAGATATGTCAGTAGTATTATGATGAGTCTATTAACTTGATGTTTGGCAAATCGAAGCGGGGGCGAAAACCCTATAGGTTCTGCCAAAATCCCCAGAACCTTGACAAGTGAATAATTTCAGCGTTTCGAGAATTGGAGCAGATGCAAATTATTTGCAATAAGGTGGGCTGAAATTGATTAAATTTTTCGATCTGCCAAAATGCTTCTCAGGATGCTTGCTGTGGTTAGGTTTCAATACCCAGCT # Right flank : CAATACATTGGCTAAACAAGAAATGACTAACGCTCAAGGAAAAGAAAAATAAATGTAGGTTGGGTTGAACGGAGTGAAACCCAACAATACCAAAGTTTTCGCGTTGGGTTTCGTTCCTCAACCCAACCTACAGCTACATTGGTAAAAGCCTTGAAAAATAAGCGGTTTGAGATTTTTATTTGGTGAGAGTGATTAAAGAGGATTAAAAAGAGCGATCGCAATTACGATAAATATTATTTTTGATAGCATTTTCCGACATAGTAACATATACCCGTAGGGGCATGGCACTGCCATGCCCTCTACAATATATTGATATGTCGCTGTTGCGTGTTGTGACAAAGCATGTAAATCTATGTTTAGTAATATTACTGAAAATATCAAGGCTTTACTAAAGCGTTACATCAGAAAAATTGGGTAGTAACTGGGTAGTAATTGGGTAGTTTTACCCTATATAACCACCGGAGATTGATCCATAATAATTGATATAAATCATCGCTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGCAACCAATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : NA // Array 1 561-230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQH010000128.1 Calothrix parietina FACHB-288 contig128, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 560 37 100.0 36 ..................................... ACATTGTTATATCTTTCTTCAACCTTGTCAGCAGCT 487 37 100.0 36 ..................................... CAACAATTACCTTTATTCATTTTGTAGCGAACTAAA 414 37 100.0 37 ..................................... TTCAGGTTCAAAACCCGCCCAAACGCCACCGACCGGG 340 37 100.0 37 ..................................... TTGGAACGAAACCCAGCAGTATTTTGTGTGGCAAGAA 266 37 94.6 0 .........................G..........A | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 98.9 37 GTTTCAACAACCATTCCGGCTAGGGATGGGTTGAAAG # Left flank : CCAATCCGAACCTTGAAAATATAATATTGTCATAACAGCGCCGCAGTTCATGCTCTTTTGAGCCAATGTACTGTGATAAATCTGGGTTAGTTTGGCAGTTGTCAGACTGTCATGCTTTCTGACCCTGGTAGCTGCCCATTCCTGATGCTGCCATCTGTAAAATTCTATAGATGGGATAGGTGCGCTCCCAGCAATAAGGAATCAGGCTTTTAGCTGTAGCCGTTTTTATAACGGCGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCAGGGGAACCGTCTCAAATATTTTTTTGGCATGTCGAAGCGGGGGCAAAATCCCTGGAGTCCTGCCAAAATCTTAAAGTCCTTGTCATGTCTTAACTTCAGAAACTACTATGTCAGTTGATTTAGTTTTTTGATATGAAATAAAGAAAGCTTTTTCAGAGATCTGCCAAATTTATGCCAAATTTGTAGCTGGAAAGCTTTATTTACAAGGAGTCTAGGCGGCAG # Right flank : AAATCTTCATTAGCAAGCTTTTGATTTGGTTGCTGCAACCATTTGTGCCAGAATAGTTCTGAAAAAATAAGCATATAAAGACTATTTACTCGCTCTAACCAGGCTGTAAAGTCTTGAAAAGGTTATAAATTACAGCAGTTTTCACCTATTTGAACCACATCTGTCGTAGTAGGGGCACGGCACCAGTAAAATTATTGTATGTGCCAAAAGATTGTCTATGCCGTGCCCCT # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCATTCCGGCTAGGGATGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 20257-20587 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQH010000102.1 Calothrix parietina FACHB-288 contig102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 20257 37 89.2 38 .......TGC.........C................. ACAGCAGATGCGGCGGTAGCAGCAACGGCAATGACCGT 20332 37 100.0 37 ..................................... CAGCAAACCGTTTTGGAAAAATTGCTAGATCCAAAAT 20406 37 100.0 37 ..................................... CTAGAGAAAAAGGTGCTAAAAACTTTTTCTATATAGG 20480 37 100.0 34 ..................................... ATAAAACGCTACTGCTGGAAAATAGCGAAGTTAA 20551 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 97.8 37 CTTGAAACTTAGCGAATCCTGGCAACGGGATTGAAAC # Left flank : TTTTTTACTATTGATGAGGTGGAATTTTTACAGCTTTATTCTTTGGTGGTACGTGCTTTGCGGTTATGTGACCAAAGGTCTGTACAATTTTAGGTGAGGGGCATTGGGCATTGGGCATTGGGCATTGGGCATTAGGCATTGGGCATGGGGCATTGGGCATTGGGCATTGGGCATGGCGGTGCCAATGCCCCTACAATCAACTATTATCTGTACCTCACTAACTTGCAATTCGCTGTATTTTCTCCAAAGGTCTGGACATTGTTGGAGAATACCCGTATGATGATGCTATTAAATTGATGTTTGGCAAACCGAAGCGGGGGCTAAAACCTGGGGGGTTCTGCCAAAATCGCCAGAACCTTGACAAGTTAATAGTTACAGCGTTTGAAGAATTGCGACAAATAGGAATTTGTTGCAATAAGCGAGGCTGAAATGAGGTCATTTTTGAGGTCTGCCAAATTTGCTTGTGGAATCCTTGCTCTGTAAGGGTTTCAGGCGGCGGA # Right flank : TTTTCAAACCATCTAGACCTCCGCAAGGGTACTCCCGCCACACCGAAGGTTGGCGGTGAGGGGAATTGCGGGACAATTGGAGGGGTTCGATACCCCTTCAATTGTCAGG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACTTAGCGAATCCTGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 1 92222-92617 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQH010000002.1 Calothrix parietina FACHB-288 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 92222 36 100.0 39 .................................... ACATAACAACGGGCTACACCAGCAAACCAATCTGATAGA 92297 36 100.0 35 .................................... GTTGAACCCCAGGTTTGCGCGATAGCTGTTAGTCC 92368 36 100.0 35 .................................... TTTCTTATCCTTGGTTCCCTGTGTGCAAGGCTTAA 92439 36 100.0 36 .................................... ATTTCTTTTTCCATCCTTGAGGGAGGCTTGGGATAT 92511 36 97.2 35 .........C.......................... GTAAGGTTCCCTACCTCGCCCAAGGTTGCTATCCA 92582 36 91.7 0 ..........................T....AG... | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 98.1 36 GTGATTCGTGGCTTGATGCCGTTAGGCGTTGCTCAA # Left flank : GTAAGACGGTTTGGTTGTTTATTTTTGGGAGAAAGTGACCAGTTGATTAAAACGATCAAACTTGTCTCAGAAGATTATCTACAGGGGGTGAGACAGTGGGTGATTAGGGATAATCGAGGAAGGTTAACCTTACCTTATTGGGTTGACCATGTGGGGTCAAGAAATACTCGATTTTTGAGGTATCGGATTAAGGAAATGCCAAGCTCACCACCTCCTGATTTGGCGTGGACGATGATTCAATCTCCAATTTGACAAGTATCTCTGATGGGAAAGGGAATTTAGGGTAAAAGAATAGTGGAAAGGTTTACGCGGTAAGGGATATGGTAATTGAGGCAAGGAACAAGGTGCTTGCCATTTTTGGGAAAGTTTATCGGCACTTGGTTTGAGGGGCTGAAAGTAAGGGAAACTTTAGTAAGTTTTGTGTTTTTGGTTTCTCGATCTGAAAGGTACTTGTAAGATAGTAAATGAGCCTTGCTCAGTTAAGGGTTTTCACCTTTGCT # Right flank : ATGAGATACAGGTGAATTAAGGTTGTGTTTACCACAAATTCCTCTTCAACAACTACTTTGACTAGAAATTTTTCCCATTGCTCAATTTGATGAAGCAGTTCTAACCTGCGATAGCTACTTAGTGCAAATGAAGCAGAGAGAATTTCTATGCATACAAGAAAGAGAGGTAAATTGAATCACCTCTCCAAGCGATGGGATAGGTTCTTGTGTTTTATGCTACGTCGGCTACAAGTAAGCCATTAACAGCGATGATGATTATTTGTGCTGCCAAAGGAGTGTCACAGCATTGCCTGTCATCCCTATTACAGGGTTGTGCTACCCATTTCCCCTAGAGATTTTGTTAGAAAGTGCCAAGTAGTTGAGAACCATTCCAGACTTGATACAGTTCACCCAAGTTATCTGGTACTGAGTAAATTTCAATTTCTGGTAATACTGGGTCGGCAAGTTGGTCAATTATTCCTCAAACTCTGATTCAGCTAAGGTTGAGTGTTACAAAAATT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATTCGTGGCTTGATGCCGTTAGGCGTTGCTCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 12953-12703 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQH010000103.1 Calothrix parietina FACHB-288 contig103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 12952 37 97.3 34 T.................................... TTAAGGTTGGGGGTATAGAACTTAAAAGCATTAA 12881 37 100.0 33 ..................................... AATGGATATACAAAACCCCTGGCTCGATTAATT 12811 37 100.0 35 ..................................... TTAGAACGATCTGCACTGTTTTATTAGGAAGCAAT 12739 37 89.2 0 .............G.....T.A..............A | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 96.6 34 GGTGATTCGTGGCTTGATGCCGTTAGGCGTTGCTCAG # Left flank : AGTAAGACGGTTTGGTTGTTTATTTTTGGGAGAAAGTGACCAGTTGATTAAAACGATTAAACTTGTTTCGGAAGATTATCTCAAGGGGGTGAGACAGTGGGCAATTAGGGATAATCGAGGCAGGTTAACCTTACCCTATTGGGTTGACCATGTGGGGTCAAGAAATACCCGATTTTTAAGGTATCGGATTGAGGAAATGCCAAGCTCACCACCTCCTGATTTAGCATGGACGATGATTCAATCTCCAATTTGACAAGTATCTCTTATGGGAAAGGAAATTTAGGGTAAAAGAATTGGGGGAAGGTTTACACGGTAAGGGACATGGTAATTGAAGCAAGGAAAAAGGTGCTTGCTATTTTTGGGAAAGTTTATCGGTACTGGGTTTGAGGGGCTGAAAGTCAGGGAAGGTTTGCTAAGTTTTACGTTTTTGGTTTCTCGATTTGGAAGGTACTTGTAAGATTGTAAATGAACCTTCCTCAGTTAAGGGTTTTTACCTTTGC # Right flank : AGCGATCGCCCACTGGTTTAAGATGGAGTGCGATCGCTACTTAGTGCAAATCAACCAGAGAGAATTTCTATGCATACAAGAAAGAGAGGTGAATTGAATCACCTCTCCAAATGATGGGATAAATGCTTTGTGTGTTACGCCGCGTCGGCTACCAGTAAGCCATTAACAGCGATGATGATTATTTGCGCTGCTAAAGGAGTATCGCAACATGGTCTATCATCGCTATTACAGGGTTGTGCTACCCATTTCCCTTCTAGATTTTGGTAGAAAGTGCCAAGTAGTTGAGAAGCATTCCAGACTCGATACAGTTCACCCAACTCATCTGGTACTGAGTCAATTTCAATTTCTGGTGCTACTGGATCGGCAAGTTGGTCAATATATTCATCAAACTCGGTTTTAGCCAAGGCTTGGTTATCAAATTCATCTTGTACAATCATCATGAGTGACCTCATTAACGGGGTTGAACAAAAGGCGATCGCATTTCTCTTGGCGGAGGGCGA # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGATTCGTGGCTTGATGCCGTTAGGCGTTGCTCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 108805-109485 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQH010000021.1 Calothrix parietina FACHB-288 contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 108805 37 100.0 34 ..................................... GATTTTTAGATTTACAGCTAATAAAATGCTTACC 108876 37 100.0 34 ..................................... AATTGACTTGGATTCGCCAGAGTTTGAGGATGTT 108947 37 100.0 35 ..................................... TTCAAATTCTCGGTACTTTAGCCAGTTGGCGTATT 109019 37 100.0 36 ..................................... AAGCTAGCTTACGACACAGGCGTCGCCTCGGCTGAA 109092 37 100.0 34 ..................................... CTTTCCCGTGATGCCCACATCGCCCTTGCTCCCA 109163 37 100.0 34 ..................................... TCAGTACAAGACTTATTATCGATAATTTTAGCCA 109234 37 100.0 35 ..................................... CCCCAATTTCCCGCGCTTTCTCTATGTCGTTTTGC 109306 37 100.0 35 ..................................... AAACATCAGGTTGGTATGCACCCAATCCTTGATAT 109378 37 100.0 34 ..................................... GATGAAGTGCAAGAGATTGGCGCATTCAAAACAC 109449 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 100.0 35 GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : TTTCGTACTTCAGGCAAGGGGACGGCAGTTGCTTCAAGCCGGGAAACCCGTCCAACGCACTGCCTCATGAAAGCTGCTAGAAGGTGTTTACGCCTGGGTCAGGTTTTGGTAAAATTAAGTCTAACAGGAACGGTAATCAACCTGTATAAAAACCTAACTGCCTAACGGCAATCTGTACCTTGACAATTGAAGATATGGGGTTCTATTCCATAGTTCTAGTTCCTGCCCAGGAATAGGTAAAATCTTCATGGGGGCTAGACGAAACAGAATTTGAACAAACAAATTCTTTGGAGTAATCCAACTACCGAGGGGCACTCGGAAAGTTAACGCTTGAGGAGAGAACCACCTCTAGTTTAGATACCGCAAGGGGTCTAATTTAAGTGGACTCGTTGAATCAAGAATCCCTGTGGCTTTAGCCCAGGGAGTGTCAAGTTATTATGGCGCTATCCGCGCTCCAGAACCTTGAAAACTGCATATAGATTAACTTTAAAGCTTCCGCA # Right flank : CGAATGTTCATTTTGGTATCCGATGGCAGGATATGGTTGAAATTTCATTTACTCCATGAGCGCAGATAAGCCATAATCCTACCGTTTAAATAAAAAAAGTATGCTGTTGCACCACCCTTATTTAAAAGATATTTTGCCATTTGATGAACTTCTTTTTGTTGTTGTACCTTGTTATCGGCTAAGTAAATACCTAATAAAGCCTGATTAATTATTCGATGAAAATTGGTATCTGGTAACTTAGCAGCACTTTTATTAGCATTTTGGAAAAAAGTTAAAAATCTTTGAGACATTTGATAATGATTTTTGTAAAAATCACAAAAATTCAAATCCCCATTGATATGGTCTTCATCTTGGTCAATTAAATAATCAAGTAAAATATGCAATCCCTGTAACCAGGGGAAGTAACTATTTTTAACAAGCTGGCTCATATCCTCAGAAAAATTTTTATCAAAGCCATAAGAAATTAAACAAAAAATACCTAAAGTTGACCCAGTAGCAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 8214-9929 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQH010000022.1 Calothrix parietina FACHB-288 contig22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 8214 37 100.0 35 ..................................... CATTAACAATTACTGGGGGATTATAGGGGCGTACA 8286 37 100.0 36 ..................................... GAGTGCCAGTTACTTCTGGATACTTGCGGTGTTCAG 8359 37 100.0 35 ..................................... TAGATTTTCCTCAATATCTTCTACTACCCTGCGGA 8431 37 100.0 33 ..................................... AAAATAATTCTGCGATTAAATCAGCTTCTAAAT 8501 37 100.0 35 ..................................... ATTATTCTTTAACTTGAAGAGATAATGATGTTTTT 8573 37 100.0 38 ..................................... ACGAAAATTGAGCATTGATGACGCGTTCCTTGAAAAGA 8648 37 100.0 35 ..................................... GGATCGCACATTACGCCTTCCGGTCGCAACCCCGT 8720 37 100.0 41 ..................................... AGCCGGCATCAAAGCCAAGGAATTTGCTGATGCACTCAAAG 8798 37 100.0 34 ..................................... AAGGAATTCCGCCAGGGGGAATTAATAGCCTCAG 8869 37 100.0 37 ..................................... ATCTGCACTGCGCGGTTAGTATCGGCATCTGCACGGA 8943 37 100.0 42 ..................................... CGAATTACCAACCAAAGCTTTGGTGAATATGGACAAGAAGCA 9022 37 100.0 36 ..................................... TATTTCCCGGTTCAGGGAAGGTGACTGGGTGCGAGT 9095 37 100.0 38 ..................................... CTGTCGCCCATTGGGCACATGCCAATCACGCCACTGGG 9170 37 100.0 34 ..................................... AAATCGAAACCAAAAACCAACCAGAAAGATGTAA 9241 37 100.0 41 ..................................... TCAACTGCGGAACACACCACGACCGAGACATTAACGCAGCA 9319 37 100.0 34 ..................................... AAGCAATCTTAAATGATTTTGGCGACCCTACGGA 9390 37 100.0 37 ..................................... AAAGCGGAATCAGAAACGATCGCATTATTAACCTGGA 9464 37 100.0 34 ..................................... TACTTGTGTGGATGTTTTGGGTGTATCTACCCTT 9535 37 100.0 34 ..................................... ATGCTCCTGGTTGGGAAACTTGGACACCTGCACA 9606 37 100.0 36 ..................................... GTCAGCTAAACTTGGCAAAGCGAACGACCCAGAAAT 9679 37 100.0 36 ..................................... GTGTATGCAACTTTTTGGCTAAACTGGCATCTGAAC 9752 37 100.0 33 ..................................... ATTAATAAGCTGATGTAACCCAAGCTGTTTAGA 9822 37 100.0 35 ..................................... ACGATACCAAAAGAGCCAAGGTGAAGTAGCCCATA 9894 36 94.6 0 .............-..............A........ | ========== ====== ====== ====== ===================================== ========================================== ================== 24 37 99.8 36 GTTGAAATTTCACTTAATCCCTATGAGGGATTGAAAC # Left flank : GCAAAGTTAACTGGCTCCCATGCTCTGCGTGGGAGCGATGATCCTGAGGCTCTGCCTCAATTTATTCAGGAGACGAGGCGGAGCCTCGCAATACGCATTTCCAGCCGGAGGCTGGAAACGAGATAGAGAAAAGTTTTGAGCTTAAGTTGACACGTATGGGTATTGCCATGCCCTCTAGAATATATCGATGTGCCGCAAACACTGTTTAAAATAAAGTCAAGCCTACAGAAGTACAGTTAAACCTTGCCCAATCCGACAATTTTCTAGGCAGAATGCGCGAAGGGGTAGGTGTAAAATTTGAAGTTACCAGAAAAATCGGTGAAACTCTTTCTCTGTAAGTCTTTTAACTGTTAATTGTTGTCCAGGCACCCGCGTGCCTTATACAGACTGCCTTTCAGCTTTTTTAGCTTTGCTTTTTTTCTATCGCGTATGTTATGATTACGCCATCCGCGCAACCGAACCTTGAAAACTGCATATCAGTTAACTTTGGAGCTTCCGCA # Right flank : CAGAATTCATTGCAACCGATAAAAATTAGGCTTGTCAACAGTTAATAACCAAAGTTAAATACTATGGACTATTGACTATGGACTGTTGACTAAAATCTATGACCAATGAAATCTTTCATCGACTTGCGCCTTTTATCCAAGAATATATCTATAATCACAACTGGACTGAATTACGCCCAGCACAAATAGCCGCTTGTCAAGTCATATTTGATACCGATGCTCATTTACTAGTTGCAGCCGCAACAGCCGCAGGAAAAACAGAAGCCGCATTTTTACCTGTGGTGACTCGATTGTATGAAAACCCTGCTAATACCATAGGTGCGCTATATATTGGCCCCATTAAAGCTTTAATTAACGATCAATTTGAACGCCTCAATGGTTTACTCAAAGCCGCAGATATTCCAGTATGGCATTGGCACGGTGATGTATCTCAAAATCAGAAAAATAAGCTATTAAAAAATCCCAAAGGTGTTTTGCAAATTACGCCAGAATCTTTAGAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 7488-5640 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQH010000024.1 Calothrix parietina FACHB-288 contig24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 7487 37 100.0 35 ..................................... AAAAATATGATGCTTCCGGGCGATCGCAAAATGGT 7415 37 100.0 38 ..................................... AAAATTCAACGTGTAAATTCTCAATGTGTTACTGTAAT 7340 37 100.0 34 ..................................... TTAGATATGGGCATTTCCCCTCAGATGCTAAAAA 7269 37 100.0 38 ..................................... TAAAGCTGCTGGTGTTCCCGTTCCTCCTGGCATGTCTG 7194 37 100.0 36 ..................................... CCTGATATTAATCCTATTGAGCCTAAAACTTTTACT 7121 37 100.0 35 ..................................... AATGAAGCCGGAACATTTTAGTTCAGAGGATTTAG 7049 37 100.0 32 ..................................... AGGATAAAGTAGAATTATTAATAGAAGTTAAG 6980 37 100.0 40 ..................................... TGCACCGATTAGCGTATGGCACGAGTTACAAGCCAGAAAA 6903 37 100.0 37 ..................................... ATTTAATGGCAATCCCATTTTTTTGAAAGATTCGTAG 6829 37 100.0 32 ..................................... AACCAAGACACAATCGGACTTTGGGAAACTAG 6760 37 100.0 35 ..................................... TGCGCAGATTTCTTTAGCTATTGCGGGGGCTTTAG 6688 37 100.0 33 ..................................... TCAAGACACCCACTGATAAGCTAGGTTTAGCAA 6618 37 100.0 37 ..................................... ATTTTTAACCATTTCTGACTTAACTGATTGTCCTGAA 6544 37 100.0 35 ..................................... CACTCCATAAGCTATTAGCTTTATCAAGCCCCTTC 6472 37 100.0 36 ..................................... ATATTCATAACTAAAGATGGAGATATTAAATATCAA 6399 37 100.0 34 ..................................... GCGTACCATCCGTAATGCCGGGTATTTATTAGAA 6328 37 100.0 35 ..................................... ACTTTGGTAGCCGCAACCACGGGACAGCCCACAAA 6256 37 100.0 36 ..................................... GATTTCCAATGCTTAGGGGGATATAGCTTGAATATT 6183 37 100.0 37 ..................................... AAAAATGCCCATACCCATAAGAACAAGGTATAAAGGG 6109 37 100.0 37 ..................................... GAATAAACGCGATCGTTGTCGATGTACTGAACATAAT 6035 37 100.0 35 ..................................... GAAGACTCAAAATACTGCCATAAATCATTCACAAT 5963 37 100.0 34 ..................................... AGAGACAATCTGAGACTATCGGTGGTTGGTTGTT 5892 37 100.0 34 ..................................... GCAGTAAATATATTTTGCTATCTGCCACCTTTTT 5821 37 100.0 36 ..................................... AAAGAAGCGCTAACAGAACTAAAATCTGTTGTAGTA 5748 37 100.0 34 ..................................... AGAATTGAGACAAGTAAGTGAGCCGGTGATCACA 5677 37 83.8 0 .....C.....TA...A.T.............T.... | A [5654] ========== ====== ====== ====== ===================================== ======================================== ================== 26 37 99.4 35 GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : CGGTGAGTAAAGCACAATCGGAAGTTATGCCCCAGGAGTTTGCTAAATTGACAGTACCAGTACTGTTAGTTGCGGGGGAGTATGACAAGATTATTCCCGCAAAAATGGGACGACAAGCTGCGGCGATGAGTGATAAGGTTGAGTTTGCGATGATTCCCGATACAGCGCATTTCCCAATGTTAGAAGATGCTTCTACTTACCTGCGAATGGTGGGGGAGTTTTTGCAAATTCCCGTAGCAGTTGATTGAGGAAATGACGATTTTCTCCGCAGAATGCGCGGATGGGTAGGTGTGGAAAATAGGATTTTGGCACACATAGCTGAAACTCCTTATCTGTAAGACTTTCACAGGTTAATTACTTATCTATCGCCCGCGCACCTTACACAGACTGGCTTTCAGCGATTTTGGGTTTGCTTGTTTTCTATTGCTTGTGTTATGATTTACTCATCCGCGCACCAGAACCTTGAAAACCTCATATTGCTTAACTTTCAGGCTTCCGCA # Right flank : CAAGGTTAGAAAATCCAAATTGTTTTTCAGCATAGTAATGGCTTTAGCCCTTACTACCAAGAAAAAGTTGAGTTTTTTGTGACATTTTCGGAAGTCTTATTTATTAATTTCTCAATCCTTTCTCTTTTAAAACCTCATCTAACCAAGCTAAATTTTCTGGTGAAATCCCAGGTACAGGTTCTTGACTATAATCAATCACTAAATCATAATTACCTTCATCGTAGAGTTCACTAATTAAGGTTTGAATATCTACTAAAGGTTCTGTATCACCTTCACGTAAAGGTAACAGAAAAGAAGGTATAGAATCTGGTAAATTAAATGGATATAAATCGGCTTTAGGACGTTTGGTGGCGCGACTTACCAAGATTCTATAGTCAGTTTGCAAATTATTTTGTAGTTGCTGTATTGGCTTTCCATCTCGCAGCAAATCAATTTCTACTAAATTGGTATAACTTCCTAAAACTTGTAACCGCTTTTTTGTATATGCATTTCGTCCTTCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 32749-34002 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQH010000004.1 Calothrix parietina FACHB-288 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 32749 37 100.0 35 ..................................... ATTTCCAGGGGCGAATAACTCGAACCCGCAAGAAG 32821 37 100.0 35 ..................................... TTTTCTTGTGCTTCTGAATCTCAGGAAATGCTAAT 32893 37 100.0 34 ..................................... AAAGACCTTAACAACTACACAATTAGGGATGCGC 32964 37 100.0 36 ..................................... TTGCACTGGTTTGACAATCATTTTTAATTCGTTCAG 33037 37 100.0 36 ..................................... ATTTAGGATTCTCCTACTGGTAATAGCCGCACTAAT 33110 37 100.0 34 ..................................... TTGAAAAGCATATTCAGCAGTTCTCAAGCCTGCG 33181 37 100.0 34 ..................................... GATTTTGCAAGAAATATTGATACTGCTGCTAAAC 33252 37 100.0 34 ..................................... TATCTACTACAACCGGAGTGTGGGCACTAAGCAC 33323 37 100.0 34 ..................................... AATTATATCTTTAGTCTTATATACCGAGTATTGG 33394 37 100.0 33 ..................................... GAGAATATTGTTGTTGATAATAATGTAGATTTT 33464 37 100.0 33 ..................................... GCGAGTTATAAAAACTTAGTTGTTACACCCTCT 33534 37 100.0 36 ..................................... AGAAGATGTACGAGACGGAATTAATCAAAAGCTTGA 33607 37 100.0 35 ..................................... ACATTGAGAAGCCTAGCAATATAGGACTAGATAAG 33679 37 100.0 35 ..................................... GTGCTTTAATCCACCCCATAGGCGATCGCCCTCTT 33751 37 100.0 34 ..................................... AGAGAAACCTCTAAACACTCTCAATGATGGTTTA 33822 37 100.0 34 ..................................... TCCTAAAATTAAGTTTCGCAGCTTCTAAATCGAT 33893 37 100.0 36 ..................................... TAGTTTGTACTTCAGTGCAGTAAGTGTATTCAAATA 33966 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 18 37 100.0 35 GTTGAAATTTCAAATAATCCCTATGAGGGATTGAAAC # Left flank : GCTTTTGGAGAAATTTTAGTTTAAAGGACATGGTACTATCTTGTCCTATCTCTAAGTCTAATGTTTTGAGTTTGTAATTTTTTAAACATCAACTTAAACATTGGTTCACCCATTGCAGCTGGTTTGCTACAATCAGACCAATGTGGCTGAATGCACCCGCTATTAAAGCATCTTGCTTACATCCTGGCAAGCTATCTCTGTTTTGGTAGGGAGTAGGGGGCAGGAAGTCTGGAAGTCTCCCATGTGTCTACAGCCAAAGTTTTTTTGGCAGAATGCGCGAAGGGGTAGGTGTAAAACAAGAACCTTGCAGAAAAATTGCTGAAACTCTTTATCTGTCAGATTTTTAACGTTTAATTACTATTGATGCACTCGCGCGCCTTATGCAGAGAGACTTTCAGTCATTTTGGGTTTGCTAGTTCTCTATTTTGCATGTTATGATTACTCCATCCGCGCTGCCGAACCTTGAAAACTCCATATAACTTGACTTTGAAGCTTCCGCA # Right flank : CAAATTGGTATTGAAACACCTTTCATCTAATTCCTGAGACACTTCATCAATTGTTGAAATTTCAAAGAAAGTGTATTTCAGGTAAATGAGGTACGCGCTTCGGGGCATGGCAGTGCCAGTGCCCCTACAATCAACGATTATCTGTACCTCACCAATTTGCAATCTGCTGTATATAGGAATAGGAATCCGATTTGATTTGGTGAAAAAATAACCGTATTTGTAGTTAGGGCATTGCCCACCGAAACCCCGATATGGTGGGCAATACATTCCCAATGCCCAATGCCCAATGCCCAATGCCCAATGCCCATTTTCAAAACATGCTAAGTTGCAAAATTAGCGATCGCACTAGCTAATGAGGTAGGTTTTAAAATTAATTCGGCAAAAGCTGCATTCAAATGTCCTAAATCGGGATTTGCTGTTAAACTCAGCCAAGTTTTGATACTTCCTGGTAAATCAGAATTTAGCCGTAGAGGTATTTCTGATGTAGACAAGGATTGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAAATAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 5070-6907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQH010000049.1 Calothrix parietina FACHB-288 contig49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5070 37 100.0 38 ..................................... AATCAGCAAAAGGTAATGGCTCTTGTCCTTCTGGCATT 5145 37 100.0 36 ..................................... TCAATGTACCCTTCATCTCCTTCGACTATGCGGGCG 5218 37 100.0 36 ..................................... CAATCTTCCAATAATCCAGATACATCACCAACAGCA 5291 37 100.0 34 ..................................... AACGGCACAAATGGTAAAGTTGTAACCCCAGAAT 5362 37 100.0 33 ..................................... CCCAAGTTGTATATGCAGAACAGAACATAAATT 5432 37 100.0 33 ..................................... TGAAACTTCAATATTAAACCACCAATCCTTAAG 5502 37 100.0 35 ..................................... TTAAATAGATATAATCTATAGTACTATATATAATA 5574 37 100.0 33 ..................................... ATTGGTGAGAGGATATCTCTAAATCTCTGACCG 5644 37 100.0 33 ..................................... TTCAACTCGAAATGCCCCAAAAATTTTGAACCC 5714 37 100.0 36 ..................................... CGAATTACCAACCAAAGCTTTGGTGAATATGGACAA 5787 37 100.0 34 ..................................... TTGCCTGATACTTTTTCTACTATTCCTGAGTTGC 5858 37 100.0 38 ..................................... TGCATTCCTGACAACCATCCAGATTTCAAAATTAACGA 5933 37 100.0 34 ..................................... CGTGCCAGCTTGTGAGCATGTCCACCATCTGCTA 6004 37 100.0 34 ..................................... ACAGAAACCGGAGGACTGCTGCATAAATCTTCTG 6075 37 100.0 35 ..................................... ATACCTATTGGCTACCTGACAGCAAAAGAAGACAA 6147 37 100.0 35 ..................................... AATTTATGACCCTAAAATTGATGCTCCGAGATTGC 6219 37 100.0 36 ..................................... TGAAAGCATCTTCTTTATTTAAGGCGTAGTAGTCAG 6292 37 100.0 39 ..................................... TAAAGTACTTTACATCAAGGCTACTTTTAGGGCATCTAC 6368 37 100.0 37 ..................................... AACTCACTGTAAGAATAAGTAACACTTGTGTTTGCAG 6442 37 100.0 35 ..................................... GAGAGATAAATCTCGCCGGGGCTATTAACAACAGT 6514 37 100.0 34 ..................................... TAAAAGCCATGATAGACAATCCTTGTGATGTTAG 6585 37 100.0 36 ..................................... GGATATAAAGCAAATATCGCTGGTGTTCCGGTGGTA 6658 37 100.0 35 ..................................... ATAAAGAAAGAAAAGCTACTTATCAAAGTAAGTTT 6730 37 100.0 33 ..................................... CAGGTTGAGCCATCGGATTTTTGGTACAGATTT 6800 37 100.0 34 ..................................... TTGCCTTGTCCGAGCTTGGCGCTCAATCAGATAA 6871 37 94.6 0 ..................T..G............... | ========== ====== ====== ====== ===================================== ======================================= ================== 26 37 99.8 35 CTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Left flank : AGATTAGATGCTTTAATTGACTCATCAGTAAAGAATTTAATTATTCTCTAATGATATTAAAATTACCGTAATTTGAATAACTGTATAATTAGCCTACTGATTAGCCACAAACGTTAAAGCTGTGGCTTTTGCAGCTTAAGCGGAAGCTTATACTGCTTTGACGCAAATTGCTATGTTATAATAATTACCAAGTGAATCATTATTTATTAGAATTCCTCTTGCCCACTCCGAATTGAGATGAACGTCAGCGAATTCAACAGTTTTCTGGGAAGAATGCGCGGATGGGTAGGTGTGGAAAATAGGGTTTCTCTAAAAATGGCTGAAAGTATTTCTCTGTAATGCTTTCAAATATTTTTCATGTTAAATCGCCCGCGCTCTTTATGCAGCAATACTTTCAGCGATTTTGCCTTTGCTTTTTTACTATTGCTTATGCTAGAATTGAACCGTCCGCGCAACAGAACCTTGAAAACCTCATATTCACTAGCTTTCAGGCTTCCGCT # Right flank : CTTTAAGACTCAAGACTAACAGGGAAAGTCACTGTAAAAGCTAGTAGGTTGGGTTGAACGAAGTGAAACCCAACAAACCCCTGGAAATGTTGGGTTTCGTTCCTCAACCCAACCTACGCAGCTTAATGTTTTTCGCGCTAACTGAACTGTATTGAGTCCTGCCCTATTAGGGATTGAAACTTCACGACTCAAGACTAACAGGAAAAGTCACTATAAAAGTAGTACCTTTACCAAGGCTGCTTTCCACTTGTATTTGACCTTGGTGATGTTCGACAATGGCTTGAGCGATCGCTAATCCTAATCCTGAACCTGTAGAAATGTCGCAAGCTGTATTTTCGGTGATGTGGGTACGTGCTGGATCTACGCGATAAAAGCGATCGAATAATCTTGGTAGCGCTTCTGAGGGAATACCAATCCCTGTATCGCTGACTTTAACTTGTAATTGGGCACTACTGTAACGCAATCCCGAAACTCGATGGATTCCTTCGAGACGGGCTAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATTTCACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 3802-3398 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQH010000063.1 Calothrix parietina FACHB-288 contig63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3801 37 100.0 39 ..................................... TTTCTCCTCATATTTATAAGCCCAATACCAATGCTCTGG 3725 37 100.0 36 ..................................... TCTTACATTGATGGGGAATTGATAAATAATTTGTGA 3652 37 100.0 33 ..................................... AAATATCTGTCAAGATATCTATTACAGCGCAGA 3582 37 100.0 38 ..................................... AAAAATGTTTTTGTCGGGATCTACCAACACGGCGCAAT 3507 37 94.6 36 ...........T.................G....... AAGGCCTGTCCCTGATGCTAGGTCTAACTACTGCAT 3434 37 94.6 0 ................................T...G | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 98.2 37 GTTTCAAAAACCTATTACCCCGCAAGGGGATTGAAAC # Left flank : AAAAGCTGATGGAAAACGGAATTGATTTACCCTTCCCTACCCAGCAAATTCTCTTTCACGATCAGACAGAAGAAACAGATGGCGATCGCTCTCGTCAACGCGAAGGTTGGCCTGCTGTTAAAGGTAAAGTCCCAAAGCCTCGCCGCATCAGCGATTCACTCAGGTTGCTTGCTCAGTCTCACACCTCATCAGATGGTAATCACAAAGTAGATTCTCACAGCAATCAATCTTAAAGAACTACCAAGGAATCTCTCGCCAAGAGTTGAGTATAATTTGATTATTCATGTGTTAGCTTGACATTTGGCATATCCAAGCGGGTGTAAAAACCTGGGGGGTTCCGCCAAAAACGCCAGAACCTTGACAAATCAATAATTACAGGGTTTCGAGTCTTCGGGAAGTTGCAAATTAGTTGCAATAAGGTAGGCTGAAAACGACCATTTTTTTCGATCTGCCAAAATCCTTCCCAGAAAGCCTACGGTGTATTAGTTTCAGCACCCGGG # Right flank : AAATATATTATTTTCAAAAAAAGCGATCGCCTAACGAATTACTCAATAGACTTCTTGCAAAAATTCTTATTCTTAGCTTCTTCTTTGCGTCTTTGCGCCTTTGCGTGAGACAAAAAAATATTTATGCAAAATGTCTAATGACAAATGACAAAATTACTCCTCAGCCAACTGACTTACAATTCTTGCAAATTCATCTGTCATCCAATCATCACCAGTTTCACGATAAACTTCCAACAACGACTTATAAAACCATAAAGTCTTTTCCCTACCAATTTTTAAGTGACTCCAAACAATATCACCATATATCCGCGAATCTATTAATAACGATCTAGCATTATGCAACTTATCTGCTAAAGATACTCTGCGCACAGAAGCAGAAGTATGACGCAGATTTTCTAAATATCTATTTTTACGTTCTTGCCAAGGTGGTTTAGGTAAACTATCCCATTCTGTACAACCATCAATTATTTCTACAACTCTATCGCCAAAACGTTGACGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAAAACCTATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 4059-5260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQH010000060.1 Calothrix parietina FACHB-288 contig60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 4059 37 100.0 34 ..................................... GAATAAGACTAACAGCAGCAAAGCGGCATCTAAA 4130 37 100.0 34 ..................................... AACCAGGAAAAAGATCGCAAGACAGAAGCTAAGG 4201 37 100.0 35 ..................................... CTCTCAATGCGAAAATAATTGGCAAGTCTTGGCGG 4273 37 100.0 35 ..................................... CTTTACATGTTAGTTAGCGTTTATCCTTCTGTTTA 4345 37 100.0 34 ..................................... AATATATCTAGTAAGAAATTGCTTTCCTGCGGCA 4416 37 100.0 45 ..................................... ATACGTTACTTTGTCCTTATTACGCCATACGTGACACGCTACAGG 4498 37 100.0 37 ..................................... TTTACGATTGGGTAAGTTTGCCGTTGCCCATGCCAAG 4572 37 100.0 33 ..................................... GTTAGATATATAGGACGGTCAGTTAACCCTAAG 4642 37 100.0 35 ..................................... CTTGAGTAACGCCAGGAGACAGGATGGCTTCCTTG 4714 37 100.0 37 ..................................... CCGGATAAAGTTTATTGTTGTTAAGTAAACCCGATTC 4788 37 97.3 36 ..........C.......................... ATGGTTTTATCTGAAGTCTACCGCGTAACTTACGAG 4861 37 97.3 36 ..........C.......................... TTGCTGTCTGTAGCAGCATCAATATTTTTTCGGGTG 4934 37 97.3 36 ..........C.......................... GAGATTGAACCTCTTACACCCGCTTGGGTTAACCAA 5007 37 97.3 35 ..........C.......................... GCTACTCAGCAGAACAATCAAGAATTGCGGCTGAA 5079 37 97.3 36 ..........C.......................... TATTTAATTGTCCGCTAGGGCCAATTAAAGTTTTAG 5152 37 94.6 35 ..........C...........T.............. CAGGGCGAATTTTACCCCCTTCAAAAAGCCGAACT 5224 37 86.5 0 ..............................A..TTGG | ========== ====== ====== ====== ===================================== ============================================= ================== 17 37 98.1 36 GTTTCAAATATCTATTACCCCGCAAGGGGATTGAAAC # Left flank : AAATAAGTAACGCTAACAACTGTGTCATAGATTTAAGTTAGATTTCGCTTAGTTAATACCAATTGGCTGTCATTAGTCATTTGTCATTTGTCATTGGTAAAGATTTTGTAACATACAGCATATTTGCAGGTAAATGAGGTAGGCGCTTCGGGGCATGGCAGTGCCAATGCCCCTACAATCAATGATTATCTGGACTTCTCCAACTGGCAATCTGCTGTATTTTCTGTAAATTTTCTAGTGCTTCTGAAATTTCGGTAATAGATTTGATATCATCCTATTATTGATGTGTTAGCTTGATGTTTGGCAAACCGAAGCGGGGGCAAAAACCTGGGGGGTTCCGCCAAAAACGCCAGAACCTTGACAAATTAATAAGTTTAGCCTTTGGAGATTTGGCACAGTTGCAAATTAATTGCAATAAGGTCGTCTGAAAATAACCATTTTTTTCGATCTGCCAAAACCTCTGACAAGATGGTTGCTGTGTATGGGTTTCAGCACGAAGG # Right flank : GGTTTCGTTCCTCAACCCAACCTACGAAATTTTAGGTTTTTGAGGGTAAAGGAATAGTTTTGCCTGAAAATAAGGGTTAGGGATGCTTACTGCAAAGAAAAAATAGGGTTGCTAAATTAAGGGACTATTTTTCCCCGCAAGGGGATGAAAATCAGCCGCTTACGACGTATATTTTTTACTTGCTTAAATGCTAAACAACGAACTTAACTTTAACTCTCTTCCCTTCTGCCATCTGCCTTCTGCCATCTGCCTTTATGCAAAAAATATCCTGAAAAAAGGAAGCACCTGATAACTATGGAGTTCTGGAAGGAATTAAATCGTTAAATTAAGCAGATTCAAACACGCCAGGTGGAATTGGTACGAGTTGAGGAGACGACAAGCAAGTTCCTTGACGATACCATATTCCTTCAGTCTCGAAGATCTCAAATTGAGTGGTCAAAATTGCCCATGCTTGTTCATTGAGACCGGCTGAATAAGTCCAAGTAAATTGTTGATGACTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATATCTATTACCCCGCAAGGGGATTGAAAC # Alternate repeat : GTTTCAAATACCTATTACCCCGCAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //