Array 1 99070-98679 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBB01000016.1 Salmonella enterica subsp. houtenae serovar 48:g,z51:- strain 07-0047 NODE_16_length_99123_cov_3.34622, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 99069 29 100.0 28 ............................. TAATTAATTAAGAAAATGCCTGTAAGCC 99012 29 100.0 32 ............................. CGTGTAAACCGCCGTGAGCGTGCGCCTCATAA 98951 29 100.0 32 ............................. AGTTGCAGTGGTGTATTAATATTGCAATGTCA 98890 29 100.0 32 ............................. ATTTGAAATATGAACTGGATGAAGAATATCGG 98829 29 100.0 32 ............................. ATGGCGCACATGGCCCGCCAGTAGTCGGCGTA 98768 29 100.0 32 ............................. GATCTGTCCGGTATGGTTATTGTCTGCGGATA 98707 29 89.7 0 ............T..............GT | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGCGCCAGCGGGGATAAACCGATTTGAAATATGAACTGGATGAAGAATATCG # Right flank : TTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 190468-191411 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBB01000008.1 Salmonella enterica subsp. houtenae serovar 48:g,z51:- strain 07-0047 NODE_8_length_191453_cov_3.43768, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 190468 29 100.0 32 ............................. GAAAGGTTAATTGCCTATGGCTTGATTTTACT 190529 29 100.0 32 ............................. GGTATTTATTATGACTTGTGGCAAGGATTATT 190590 29 100.0 32 ............................. CGCTGGTTAAATGTGATTATGACCCGCGTTTT 190651 29 96.6 32 ............................T TCCAGCAACTTCAGCGTATCGGGGCTGAAGCC 190712 29 100.0 32 ............................. CCCTCCAGCGCGTCCATACTTCCTCGGCCTTT 190773 29 100.0 32 ............................. TTTCCTCGGAAAATACTTCTTCCGGTGGCCGC 190834 29 100.0 32 ............................. ATAAATTTGGCACCGGGAAAAACGGGTTTACC 190895 29 100.0 32 ............................. GTTCATCACTAAAAGGCTTAATCGATGAAAGA 190956 29 100.0 32 ............................. TTTCCGGTCTTGCGGAATTTCCCATTATAGGA 191017 29 100.0 32 ............................. TTCGATAGTGATCGCATGGTTGGCGGCAGGCT 191078 29 100.0 32 ............................. AATACACCCCTGTGAATGCTCTGGCTAGTTCC 191139 29 100.0 32 ............................. CAATTGCTGGTGGTCGGGAGCATGAATTCAGA 191200 29 100.0 32 ............................. GCAATGAAGGGGCAAACATTACTGGAGACTGA 191261 29 100.0 32 ............................. CGACTTCATGGATGCGCAAGACAGTGCCATTG 191322 29 100.0 32 ............................. GACGAGGCGGTCGCTCTTGGGGAGGGGTGCGC 191383 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAGGTCCTTGCCGCCGGAGAAATCCAGCCGCCGTCTCCTCCTGAAGATGCGCAGCCCATTGCGATTCCACTTCCTGTTTCTCTGGGAGATTCAGGCCATCGGAGTAGCTAACGATGAGTATGTTGGTTGTTGTGACGGAAAATGTACCGCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTACTGGAAATTCGCGCTGGTGTTTATGTTGGCGATGTTTCAACAAAGATCCGCGAGATGATATGGCAGCAGATCTCCGTTCTGGCTGAGGGCGGGAATGTTGTGATGGCATGGGCGACGAACACTGAATCAGGGTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTGGATCTTGATGGATTGCGATTAGTGTCTTTTCTGCCTGTTGTAAATCAATAAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTAGATTTTGGTATGCTAAAAAAAGCCTTTTAATTCAGTTGGGTATATTTAGA # Right flank : CGTGTAAACCGCCGTGAGCGTGCGCCTCATAAGAGTTCCCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //