Array 1 2836771-2837338 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017482.1 Pectobacterium polaris strain NIBIO1392 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2836771 28 100.0 32 ............................ TGTTGCTGCGGTTGCTGCCACAGCATCGCTTA 2836831 28 100.0 32 ............................ GGGCTGACGCGATAGCCAATGATGCGGTCGAG 2836891 28 100.0 32 ............................ GAAGGGCGGCAGCGTGGTGACGCACAAAATTA 2836951 28 100.0 32 ............................ GTGCTAAAGCTGACCTGATGGGGGAATTTTCA 2837011 28 100.0 32 ............................ ATACCGGAGGCGTACATGTTAACTCATCAATT 2837071 28 100.0 32 ............................ CACGCAATCAATAATCAGGAGTAGTTCATGAA 2837131 28 100.0 32 ............................ CTGCCGAGGTGATGAGGTATCCCACTTGGGAT 2837191 28 100.0 32 ............................ GGACGACTTCGTCGAGCCAATGTGGGCTATGT 2837251 28 96.4 32 ............G............... ACGTCAGAACGCAATTACCTGACAGCGTTGGT 2837311 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCAATATTGGCAAGCGTATGAAAACGAAGAGCTGATACTTTCTCCGATGCCCGGCGAACTGTATGTTTCCATGCTGGTAGGCGCAGGTATGACCGCCATCGGCGTTGTGAAATATCGACACGCTCGGCGCAACCCAGTCGCTCCACGTCCAACGAATGCTAAAACGGTCGCCGCATTGCTGCTGATCGCGCTTTATCTGGCATTCCCTCTGCACCTCTACCTACGTGAACCGCTCCCCTACTGCGCCTTCAGCCCCAGCGGTCAGCAGTTAACGGTGTGTCTGGGAGACAATGACGAGCGGATCATTGTGGAGTGATGGGGATTGAATCAGATGGGGTGGAGAATAAAATCTGTAGCGAGCTTCTTCTCAACCCTTTTTTAACGGTTAGTCGTAACTTACTGATTTTTAACCACCCAAAACCGAGACTATAAAAAAGGGTTTTTCTGAAAAAACAGAGTATTCTCTTTAATAATCTGATGATTAGCATGAAATTTTTACG # Right flank : AATAAAGCTCTCCTAAAATCAGCAATAAAAAACTCATAGGCAACGTGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCTTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCTGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTGGAGCAGGCACAGCTGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGGTTGATCAACCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2844825-2843237 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017482.1 Pectobacterium polaris strain NIBIO1392 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2844824 28 100.0 32 ............................ ATTCAAACCCTTGCAGAAATGCAGGGGCTTTT 2844764 28 100.0 32 ............................ GCCGACTGGATGTTAGAAACTGGAAAAGTTAC 2844704 28 100.0 32 ............................ ACTGTGCTGCGTATGGCTCTATTTCGTTTTAA 2844644 28 100.0 32 ............................ GAGAAGAACTAGACACGATACGCGCCACGTAT 2844584 28 100.0 32 ............................ AGCAAGACAGAGCGCATGCGAACGCACTTGTC 2844524 28 100.0 32 ............................ GCCAGTGGTTATATTCATTGTCATACCAGATA 2844464 28 100.0 32 ............................ GTCATGAATACAGCCATCGATACCACCATCAT 2844404 28 100.0 32 ............................ CACTTTTACGAAACACGTTTACAGATGGATCG 2844344 28 100.0 32 ............................ TCAGCAGTGCTGACATCGTGGAACCAACGGTT 2844284 28 100.0 32 ............................ GCATTGATATCCCCTATGAAGGGTTTGAAATA 2844224 28 100.0 32 ............................ CGCCTATCTGTGCTCTCATAGCTATCATCAGC 2844164 28 100.0 32 ............................ TACTGGGGATAGCTATGAAGAAATGAAATTTT 2844104 28 100.0 32 ............................ GTTACCATCAGTTTTGGGGTAATCAGTCTGAC 2844044 28 100.0 32 ............................ AAACTACTCAGTACCGGTGGGCAGTCCAAAAC 2843984 28 100.0 32 ............................ TTCAAACGGAAACGGCAGCGCAAATTCAAGCG 2843924 28 100.0 32 ............................ CGTCACTGTTGCGCTTAGTCCTGTAGTACGCC 2843864 28 100.0 32 ............................ TGCCGGACACTCCCAACAATCCGAAACCCGGT 2843804 28 96.4 32 ...........T................ AACAAACGCAACCAGACTTACAACCTTTCCGA 2843744 28 96.4 32 ...........T................ ATAACGTTTCCCTATTTCTTCGCCGAACCCAT 2843684 28 100.0 32 ............................ TGTATGCCGGCGTCGAGCAGACCAAAGAAGGA 2843624 28 96.4 32 ...........T................ TTGCGGTGAAAAGCTGGGTTGCGGGTTAACTT 2843564 28 96.4 32 ...........T................ GGCAATGCCATGCCGTCCTGCATGGTCTGCCT 2843504 28 96.4 32 ...........G................ TTGGTGGATTTTGTGGCGGCTGGCAGGCTGAC 2843444 28 96.4 32 ...........G................ GCATGAAGCTGGTTGCCAATGGCACCCGTTTT 2843384 28 100.0 32 ............................ GTTGGGCAGTAATGTGTTTAGTGCGCTTTCTC 2843324 28 96.4 32 .................T.......... TTAACGGTATTTATGCGGATCGAGATAAATCT 2843264 28 78.6 0 .............C......T...TCCG | ========== ====== ====== ====== ============================ ================================ ================== 27 28 98.3 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGCTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATCGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACTATTTGATAAGAAGAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTTTGGGAAAATGGTGGCTGCAAAAAATATTACCCAGACACAGACCCTTTTTATTTGGCCTATTTCACAGGTTTAAAAATCAATGAGTTACGAAAGGGCGGAAAAAAAAGGTTTTTGCGACGAAAATGGCAATTGCCGCTAATAAAACAAATCGTTAGAGTGATCGCGCAACG # Right flank : CGACATTAAGCGCTATTGTCTGGCTATTATCGAAGTAGCACTGCGCCAAGTGCTCAATGCGTTTACCCCTTAAATAATGCATATTGATGACCTTCTTTCGTAACGTTTTTAAGTAATAAGCTTCTTCTTAAGGGAATGAAAAATTGCGGGTTGGGCATTATTGACATTTAAAAATCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAGATACGATCCCGTTTTAAAAACGTTTGTGGATGATGACTATCGGTTAGAAGATCATCTCGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCAACGTATTTTTTAAAGACGTTATGCACACCAAATCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCATC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2854723-2855531 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017482.1 Pectobacterium polaris strain NIBIO1392 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2854723 28 89.3 32 A..........T.T.............. TCTCTATTCGACCACACATAGGCATCAAGAAC 2854783 28 89.3 33 A..........T.T.............. CGCTTGACCCTGCGCGGCCTTGCGTGCAACACG 2854844 28 89.3 32 A..........T.T.............. ATACGTGGCACATCCACGCCTTATTGCTAGGC 2854904 28 89.3 32 A..........T.T.............. TGATGGCATCTGGCGTTATGTCATTACGATGG 2854964 28 96.4 32 ....................T....... GGACAAAAAAGCCATCAAGGAGGCCATTGAAA 2855024 28 92.9 32 ...........T.T.............. TGCCTCGCCTGGCTGTGTCGCCAGTTCGCGCA 2855084 28 100.0 32 ............................ AGCTCTGACGGAATGGAAGACGCTCCAGTTAA 2855144 28 100.0 33 ............................ ATCACAATCAAATAAATGAGCGGCATCATTAAT 2855205 28 100.0 32 ............................ GCCCGCTGCTGCTGTAGCTGTTCGCCAGGCTT 2855265 28 92.9 32 ...........T.T.............. TTACTTTATTTGTAAGGAGCATCATGCTAACA 2855325 28 100.0 32 ............................ ATCAATAGAGAACCGGCCATCACCCATGCTTT 2855385 28 92.9 32 ...........T.T.............. TGTATGTCCAGCGCTTTACGCGATATCCGCGC 2855445 28 100.0 32 ............................ GTCCCGCTCTGCTTTTTCGTCAGATTCGAGAT 2855505 27 82.1 0 ...........T.........-C...TG | ========== ====== ====== ====== ============================ ================================= ================== 14 28 93.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAAAAATGAATGCCAATTGGGTTTAACCGGACGCAGCATGATGGTGTCCCCCTCACGCACGATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGTGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTTATATAAAATTCAGCCAGCCACTTACCATTTATTATTGCTGGCTAAAACATAAGCTAAGTATAGATATTAATCTCTCGATTGCATATTCCTAGCATATGCAGATACCTAGTATAGGCCTATCGACGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCACCGTAACTCATTGATTTTTAATTTTTATTACCTGCCCTGATAAAAAAGGTTTTTTCGGGAAAAATGTTTTATTTCCTTTTAAAATTAGGCAACTAGCATAAAATATGAACG # Right flank : GCTTATCAGAATGCGTCGCTAGCGCGACGCATTTCGGGAGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGATGTTCACACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTGTTGCCCAGCAGGCTGCCTTTAAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGACGGTAGTACGGTTCATCCTCCGGCACTAAACGATTAAAGAAACTCTCGAAATCTTGCCGCACCGTGGGGTCGGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACGTGCATCAGCCCAACGTTTATCTGGCGCAGAGCGGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGTATCCTGCTATCAGGCTTCGCGTGCCAGAATCGGT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : ATTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4225587-4227397 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017482.1 Pectobacterium polaris strain NIBIO1392 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 4225587 29 100.0 32 ............................. ATTTCGGATGACTCGCAACAGGTCGTTAGCGG 4225648 29 100.0 32 ............................. CCAATTGTCTAGAATATTCCGCATAGGCAACG 4225709 29 100.0 32 ............................. CAGGGTGATTTGCTCTCAAGCATCCCGATGCA 4225770 29 100.0 32 ............................. GGCTACCCATACCAAACGTGAAAGAGTCTTCT 4225831 29 100.0 32 ............................. CTGGCTGCCATAAAATCCGCCAGTTGAGTAGA 4225892 29 100.0 32 ............................. GTCCGGGAGACGGAAACTAACAACAGGAGGTG 4225953 29 100.0 32 ............................. TTCGTTATCCCAACAATATATTCCGATGTTTG 4226014 29 100.0 32 ............................. TATTTGCCAAACAAAGAATACTGTTTGCCGCT 4226075 29 100.0 32 ............................. TTAGCACCGCTAACCCATTGCGTCATGCCTAA 4226136 29 100.0 33 ............................. GCGATAGCGTGCCTCGCCCGGTTTGGCGCTGTG 4226198 29 100.0 32 ............................. GTCCGGTATCTGGCACTGTGATTTCACTACGC 4226259 29 100.0 32 ............................. TGAATTTACCCCATTTAGCGCAGCGCTTGTTT 4226320 29 100.0 32 ............................. CACAAAGAAAGATGGGAAGAGAAGCGTGACAG 4226381 29 100.0 32 ............................. CCGGCTTGAATGCAGCGCTGCGCAATATCAGC 4226442 29 100.0 32 ............................. CCGACCTGATGCACGACCTGTGCAACGTTGAC 4226503 29 100.0 32 ............................. GCCATATTCCTCGCTCACCGCACCGATCCCTT 4226564 29 100.0 32 ............................. GCCACTGGATTATATTAAATCCGAAACATACG 4226625 29 100.0 32 ............................. GTTAAATGGTCCGCATGGTGAACGCGCAGCAA 4226686 29 100.0 32 ............................. CATGTCGAGGTCTTTCGGATGAAACTGATAAA 4226747 29 100.0 32 ............................. CGCGTGTTATCGCCAACCATGATTACCTTGCC 4226808 29 100.0 32 ............................. ACATTGCACCCGCTGCCGCTGCTGTAGAGAAA 4226869 29 100.0 32 ............................. TACGAGGTAATCCGACCGTGGCATGGCGTTAA 4226930 29 100.0 32 ............................. AGGTGTTGGCAGGCCATCCCTTTACGATGAAA 4226991 29 100.0 32 ............................. ACCACATGAACGATGCTGGCGGATATCCAATC 4227052 29 100.0 44 ............................. AGCAGGAAGCCGAAATGCAGAAGCAGCAGGCCGAGCAGCAACAA 4227125 29 100.0 32 ............................. TGAAATAAGATTTTGATGTTTCTTTTTGATTT 4227186 29 100.0 32 ............................. CTTATTGGGATATGCAGGTTTTAGGAACGAAT 4227247 29 100.0 32 ............................. GTTTTGCTGATGCAGTTAATGTTGCTGTGGTT 4227308 29 96.6 32 ...................A......... GAATTACGCGCTCAGGGGACTACGCCAGACGC 4227369 29 93.1 0 .A.........................T. | ========== ====== ====== ====== ============================= ============================================ ================== 30 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGACGCACAGCCGCCGGCGATCCCAGAACCGAAACCGTTTGGTGACAGCGGTCACCGAGGACAAGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCACCGCGTTTGCGCGGCAGGCTGGCTGTGTGGTTGCTGGAAATCCGTGCAGGCGTGTATGTAGGTGATACGTCACAGCGGGTGCGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAATGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GATGTGAAATGTAAATTACACATGTTTCCATATTGTCAACTCGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGTGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGCGAGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4229609-4231675 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017482.1 Pectobacterium polaris strain NIBIO1392 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 4229609 29 100.0 32 ............................. CATTTGTCGTTGTCTGACTGACCAGCGAACCG 4229670 29 100.0 32 ............................. AAAGCACACCCCCTGTGCCGTCAGATGGCACC 4229731 29 100.0 32 ............................. CCCATATTACCAGCGAGATTATGTGTGGACTA 4229792 29 100.0 32 ............................. ATAACTTTTTTCCTTGAGCATTTTCGGGGATG 4229853 29 100.0 32 ............................. GAAGAGTTCAATCTTCTTGACGTGCTAGAGAA 4229914 29 96.6 32 .......................G..... ATATGCCCATCTTTCACCAGCCCATTTAACTC 4229975 29 100.0 32 ............................. CGCGTCCCGGGAGCACCATTTCTGATTTTGAC 4230036 29 96.6 32 .T........................... ATTCAAGATGATGCCCAAGAGCCAATTTATGT 4230097 29 93.1 32 .T...........T............... ATGGTCAGACGATTATTGATAACGGTCTATTT 4230158 29 93.1 32 .T...........T............... ACTGCTTCTGTTACTGGCCGCTCTCGGAGCGA 4230219 29 89.7 32 .T..........TT............... GAACCCCGTTTAGTGGTGATGCCGAGGGGATT 4230280 29 100.0 32 ............................. GTTTCCCGCCTGTTTATGGGGGCAGTCTGAAA 4230341 29 96.6 32 .T........................... CTTAAATTGACTGACGGGATCATCGGCGTGGC 4230402 29 100.0 32 ............................. GCTTGCAGGATGGTACAGGCGTTTTGTATTCA 4230463 29 93.1 32 .T..........T................ AAATGCCAACCGCAGAGCGTGAGCGGATTGTT 4230524 29 89.7 32 .T....T......G............... AAACCGCCAGTCGCCAGGGCGGTGGCGATCTA 4230585 29 100.0 32 ............................. GATTTTGTAGCGGAAATATTGACGACTCGCTG 4230646 29 100.0 32 ............................. CCCACCAGTCCCATCGATCCATGCTTCGGTAT 4230707 29 89.7 32 .T..........GG............... TATTTCAAGACTGACGCTTACTTTGCACAGAA 4230768 29 89.7 32 .T......T...T................ GCACTCTGGATGCTGAACTAACCGAAACTCTC 4230829 29 93.1 32 .T...........T............... CAAGCGGGCGTTCGCGCACCTGGCGTCAAGAC 4230890 29 100.0 33 ............................. CTTCCACGCGGCGGCTCTTTCTTTTATCTCGGC 4230952 29 93.1 32 .T...........T............... TATAGCGGGGCTATCCGCCAGTGCCCTTTGTC 4231013 29 93.1 32 .T...........T............... GTGATTTTAGTTCAAGTCCTCTCCCATCACTA 4231074 29 93.1 33 .T...........T............... TGCGCCGCCGTTCGCGTCGCGGCTTACGAGCCC 4231136 29 93.1 74 .T...........T............... TGAATCGTAATGGCGCTGGCTATTCATGGCGGGGATAAACCGCTTGTCACGTCTGGCGGCATGCTGGAGTTTGA 4231239 29 93.1 32 .T...........T............... ACGGCTGTTACGGCCAAGTTGAACGGCGCGAT 4231300 29 89.7 32 .T..........TT............... CAGCAGATCGCATATCTTGGCGTGAAGTATTG 4231361 29 96.6 32 ............T................ GGTCAACCTCTGTTGTTTTTGTTGTGGTCTCC 4231422 29 93.1 32 .T......T.................... ATTTTCCAGTAGCCGCTCGGGATTTGGACCGT 4231483 29 89.7 32 .T..........TT............... GGCGGGGAGACGGCGACGCATAAAGTCAAATA 4231544 29 89.7 74 .T........T..............C... AACATACAACATCAAATCTTCTGTAACTCACTGTGTTCCCCGCGCCAGCGCAACGAGTCGTATCGCTATTCGAG 4231647 29 89.7 0 .T..........T..............T. | ========== ====== ====== ====== ============================= ========================================================================== ================== 33 29 95.0 35 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGCATTCTCTGCTAATTATTTACTGTGTTACTTCAATACGAGGGATGTGCATTGATTGCTTCCAATTTATGTCAATATGCTTGTAATCATTAGATATAGTGGATGGAAAACCTTGGTATTTAAAAGATATATTGAAATTCGGTTGAGAAAGAATATTTTTAACAGAGAAGTTCTTTACCTAGAAATAGAATCATAGTGGTATAACTTTTGCAAAAGTGTACAGCGTTTAATTCAGCGACTGAGCGTTTTCCTGCTGTCTGAAATCAAACTGGCAAATTAGGGAAACGTAGTGATGGTGTGGGCGGCGAATGTGGCATTCGGTTTTGGGCTCCAAATCTGGGGCGAAAACCGCCGAATGCTGGTAGATTTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAATAACATGGAAAAATCGGTAGAATTTTTTATTCCGAAAAAAGTGTTATAAAACAACGCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCCGCACGAGTCAAATCTCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACCCACCGTCACGGTGAGGCGCTATGCCAATGATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCCGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGTAGCGGTGCTGTTCCTGCCGGTGAGACGACGCGGTATGATTTCACCCGCATTAGCCCAGCCGAGCTGTATGAAACGGTTGAAGGCCTTGTTAGCAGTGGGCGGTTGGGGCGTGAAGAAGGCTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGGGGAAGCATCCCGCCTTCCAATGTGTTCCAGCCAATTA # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //