Array 1 542528-542861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGXV010000001.1 Escherichia coli strain S6EE 6ee-ass_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 542528 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 542589 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 542650 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 542711 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 542772 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 542833 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 95479-93498 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGXV010000015.1 Escherichia coli strain S6EE 6ee-ass_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95478 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 95417 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 95356 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 95295 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 95234 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 95173 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 95112 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 95051 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 94990 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 94929 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 94868 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 94807 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 94746 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 94685 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 94624 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 94563 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 94502 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 94441 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 94380 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 94319 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 94258 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 94197 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 94136 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 94075 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 94014 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 93953 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 93892 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 93831 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 93770 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 93709 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 93648 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 93587 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 93526 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 33 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //