Array 1 402725-402002 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB890602.1 Thermus oshimai DSM 12092 B043DRAFT_scaffold_0.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 402724 36 97.2 44 ..........G......................... TTCCAATATTTTCTTACCCTCCTCCCAATCCTCCGGATCAAAGG 402644 36 97.2 41 ..........G......................... GAAGGCCCCCCGCAGGTGGGGCACACGTCCAGCATCAGCAT 402567 36 100.0 40 .................................... CGCCGCCAGAAGGGCCGCAAGCTCAGGGGTAGGGGTAGGG 402491 36 100.0 40 .................................... GCTTGGAGCCGCTCCAAGGCTGGAGCTATTCCAGACTCCC 402415 36 97.2 40 ......................C............. CTTCGTGAGGACTTCCAGGGGTACCCCATTCGCGAGGTGT 402339 36 97.2 37 ......................C............. CGCGCGCCCTGCGGACCCTGCGTGCGCGTAGGGGCCA 402266 36 100.0 42 .................................... TCATGGGCCACGTTGATAGCCCGACGAATGGCGTTGAGCCGA 402188 36 97.2 42 ......................C............. TACCGTGGACAGGATTTTTCTAAGCGTCCTCGTGTTCATGGT 402110 36 100.0 37 .................................... TCGCGCCCCAGGCCCCGGAGAATGTACCCCACGCCGC 402037 36 77.8 0 ......................C.....C.ACACCA | ========== ====== ====== ====== ==================================== ============================================ ================== 10 36 96.4 40 GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGAC # Left flank : | # Right flank : AACCCCCCAGGCGCTTCCTGGGGGGTTCCTTTTTGGGCTGGGGCGGGGCTAGATGTACTTGTCTCCCCGCACCACCTCCACGTTCTCCACGTAGGCGATCACCGCGTAGTGGGGGAAGTACTCCTCCTGGAGCTTCTTCAGGATCTTTAGGGCCACCTCCTCGCTTACGATGGTCTCGAGGCGGATGTTCTGCCCCTCCCAGTCCACGCTCCTGAGGCCCCGGGAACCCTCCCCCCGGGCGGGGGTGATGGTGTAGCCCTTGGCCCCCAGGCGCTTGATCTCCTCCACCAGCCGCTTTTCCAAGAGGCTTTCCGCCACGATGGTCACCAGCTTCAGCCGCACCAGCTCCATACCCTCACCCCCCAAGGAGGCCCGCAAGGGCGTGGTAGAGGGGAATCCCCAGGATCAGGTTAAAGGGAAAGGTCACCGCCAGGCTGGCCGCCAGGTACAGGCTGGGGTTGGCCTCGGGCAGGGCGATGCGCACCGCGGCGGGGGCGGCG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGAC # Alternate repeat : GTTGCACGAGATGCTTCCCCGTCAGGGGATTGCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 185149-185341 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB890620.1 Thermus oshimai DSM 12092 B043DRAFT_scaffold_4.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 185149 36 100.0 43 .................................... AGAATGTAGCCGAGCCCCCGGCTACGCTTGCGGAAAAACTCCG 185228 36 100.0 42 .................................... GGCTCGAAGTCCTCCCACTCCTCTAGGGCCGTAACCATCCAA 185306 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 3 36 100.0 43 GTTGCACGAGGTGCTTCCCCGTAAGGGGATTGCGAC # Left flank : CCGGCGGGGGATCTTGACAACTCAACCTCGTCCAGCACGCGAGTATGCGCATTCGGATTTTCATCGCACCTTCCTCTGCGGCTTAAGCATGGGCCTAAACCTCGCAAAAAGCCCTCTATTCGCCTTATGTATATTCCAAGCTTCATCTTTCTCACAAACCCCCCTTCAGCACGCCCGTCCAGGACGGGGTTCTTTAGGGGGTAGAGTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGACCTCATCCTCGTGCCATTCCACCTCCAGGAAGACCCCGTCGGGAGTTGCACGAGGTGCTTCCCCGTAAGGGGATTGCGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTATAACCGTGGTCAATGA # Right flank : | # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGGTGCTTCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [20.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 14680-15871 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB890619.1 Thermus oshimai DSM 12092 B043DRAFT_scaffold_3.4, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 14680 36 100.0 43 .................................... CTTTCCACGGCCCCGGTGGAGGAGGTCGTGCGGGCCATAGATA 14759 36 100.0 44 .................................... CTTCCTGGACAGGAGCGGGTACTGGCTTGTGGGGGCCATCACCA 14839 36 100.0 39 .................................... TCAACGTGCACGGCGTGTGGGAGTGTACCCTGGTGTGAA 14914 36 100.0 42 .................................... CTAAGGGTCCACGGGGTACCCTGGCGCGCGGTTCAAGAACTC 14992 36 100.0 41 .................................... AAGGGCAAGCGGGCCACCAAGGGCAAGGCCCAGACCCAGAC 15069 36 100.0 47 .................................... TCGTAAGATGCTCAATGAGATGGTGGCTGAAGGGACGATCAGAAAGA 15152 36 100.0 37 .................................... AGTCCCGCCCCGAGGCTGCCAGGGCTCTGGCCATGCG 15225 36 100.0 42 .................................... CGTTCCCACGCGCGGGGTATACTACGAGCTCGGATACGCCCG 15303 36 100.0 43 .................................... TCCGACTACGCCATGGAGCGCATTCTGCTGGATAGGTTTGAGG 15382 36 100.0 38 .................................... CGGAACCTCACCACGCGCCCCGTGTCGGGCGCCCTCAG 15456 36 100.0 41 .................................... GGAGTAAGTAGACCATTGCAATAAGGCTAGCGGGGGCTTAT 15533 36 100.0 38 .................................... CGGTCCAAGCCGCTTCACCTTGGCGATGACACTGAGTA 15607 36 100.0 42 .................................... CTGCCCAATTCGGGGGGGGTGAGAATAAGGCATAACCCATAA 15685 36 100.0 40 .................................... ATGCCCCTAGCCCACCCCGGCCCCCAGGCCGCCTATAAGC 15761 36 100.0 39 .................................... TCCATTGCGGAAGAAACGCATGTGTGCGCAATCACACAT 15836 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 16 36 100.0 41 GTCGCAATCCCCTGACGGGGAAGCATCTCGTGCAAC # Left flank : CGTGCAACGTCAAATAACTCGCCGTAGACGCGCAGGAGGACCGCAAACGAGTCGCAATCCCCTGACGGGGAAGCATCTCGTGCAACCTGACCAGCCACAGGGTGTGGCGGCGCATCCGCGTCGCAATCCCCTGACGGGGAAGCATCTCGTGCAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGGAAGCATCTCGTGCAACATGATTGTGGTGGGAACTAAGAGGGCACGGGAACTCGG # Right flank : CTCTACCCCCTAAAGAACCCCGTCCTGGACGGGCGTGCTGAAGGGGGGTTTGTGAGAAAGATGAAGCTTGGAATATACATAAGGCGAATAGAGGGCTTTTTGCGAGGTTTGGGTCCATGCTTAAGCCACAGAGAAAGGTGCGATGAGAATTCGAATGCGCATACTTGCGTGCTGGACGAGATTGAGTTGTCAAGATCCCCCGCCGGAACCCCGGCTTTGGGGACATGCTATCAGCGTTGGACTTGGTATGTCAAGGGTTGCTGGATGGGCTTCGTTGCTGTGCTCCTGAGTTTTTTGGAAAAAGCATTTTTGCAGCATGACTTCTGGAGCTAAGTCTTTCATCTTTTCAAGTAAAAAGGGCTGTACTCCCCCCTCCCCAGCAGGGCCCCCTTCAGGCGGTCGGCCTGGACCTGGATGAGCTCGGCGTAGGGCTTGCGGAAGCCCAAGGGATGGGTGGCCTCGCTGGCCAGGCGCTCTTCAAAGAGGGCGATGAGGCGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATCCCCTGACGGGGAAGCATCTCGTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 127857-126975 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB890619.1 Thermus oshimai DSM 12092 B043DRAFT_scaffold_3.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127856 29 100.0 32 ............................. GTGAACACCTACCAGGAGCCTCGGGGCTGGCT 127795 29 100.0 32 ............................. TACCCCATGGCTACCTGGTCACGAGCCGCACC 127734 29 100.0 32 ............................. GCGGTACTGCTGTGCCCCCCGAACACCCCCGC 127673 29 100.0 32 ............................. GTTCTGGCCCAGGATGGCGGTGGTCAGGGCGA 127612 29 100.0 32 ............................. GCCAAGGCCAAGGCTGAAGCCAAGCCCAAGCC 127551 29 100.0 32 ............................. GTTGTGCCAGGTGTTACCTGGCACAACCTGGC 127490 29 100.0 32 ............................. CGGGGAGGCTGGGGTAGGGGGTAGTCCAGTAG 127429 29 100.0 32 ............................. CTGGCCAGCACCTCTAACCCGCTGGAGGTGGT 127368 29 100.0 31 ............................. GAGAGGGAGCGGCAGCGGCGGGAGAAGAAGC 127308 29 100.0 31 ............................. GATTCCAATGAAAACCCGTGGGGGCTCCCGC 127248 29 100.0 32 ............................. GCCGTCCCCAGGCGCTCGTGGGCCGGGACCAG 127187 29 100.0 32 ............................. GTCGCTCCAGCGGGCCCTGGATAGTCAACTAC 127126 29 100.0 32 ............................. CGTCCTCGTGTTCATGGTCCTCCTCCACGCCA 127065 29 96.6 33 ............................C CAAAAAACCAGCCGTGTGGCGGAAGGGTCCCCC 127003 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.8 32 GTAGTCCCCACGCCCGTGGGGATGGACCG # Left flank : ACCGCCCAAACCATCGCCATCGGCCCGGACGGGGAGGTAGTCCCCACGCCCGTGGGGATGGACCGGCGGCGTTTGAGGCGGAGCGGGAGCGCATCCTGTAGTCCCCACGCCCGTGGGGATGGACCGGAGGTGGTAGCGTGGGCGTTCGCGGGGACTTTGTAGTCCCCACGCCCGTGGGGATGGACCGCTGGACCCGCCCCTCTCCCAGGCGAGGAGGTTCGTAGTCCCCACGCCCGTGGGGATGGACCGAGATGGCGTCCTCATAACGGAGGCGGATGTGCGTAGTCCCCACGCCCGTGGGGATGGACCGGGCGGTGGCGGGGGTGGGGCTCCTGCCCCTAGTAGTCCCCACGCCCGTGGGGATGGACCGGCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TGTGATATCCTCCTCCCCGTGGCGCTGGCGCTTTTGGTGGGCTACGCCTTGGGAAGCCTCCCCTTCGCCTACTGGTTCGCCGGGCTCAGGGGGGTAGGGCCCGAGGGGCTTAGCCCCTTTCCCCGCCTCCTGGTGCTCCTTTTGGAGCTGGGCAAGGGCCTTTCCGCGGTGGCCTTGGGGGAGTTTCTCGCCCAAAACCCCCTGGGCGGGCTCCTGGGGGGGGTGGGAGCCTCCTGGGGCCAGGCCTTCTCCCCTTGGCTCCTCCTGGGGCAGGCGGGGGGCGTGGCCCCGGTTCTGGGGGTCCTTTTCGCCGTGGACCCCAGGCTTCTCCTGGGTCCTGGCCTCATCTTCCTGGGCCTCTGGGCCTGGACGAGGCGCAGGGAGCCCGCCCTTCTTGGGGCCTCCTTAAGCCTTCCCCTTTTCGCCGGGCTCTTCTGGGAAGGGCTTGGGGTGGGGTTTGGGCTCCTTACCGCCCTTCCCTGGCTCCTTCGGCTTTGGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 128809-127987 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB890619.1 Thermus oshimai DSM 12092 B043DRAFT_scaffold_3.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 128808 29 100.0 32 ............................. GCCTCCAGGTCCCGGATGTCCCAGCCGTGGAT 128747 29 100.0 32 ............................. AGCCTCCAGAAAAGCCCTTGCCGCGTCCAAAG 128686 29 100.0 32 ............................. ATGGCCATGTTTCCCTCCTAGATGGTGGAGTT 128625 29 100.0 32 ............................. GCGTCTTCGGCCTTGGCGCCCTCCTGGAGGCC 128564 29 100.0 32 ............................. GCGGCGTTTGAGGCGGAGCGGGAGCGCATCCT 128503 29 100.0 32 ............................. CCCAAACCATCGCCATCGGCCCGGACGGGGAG 128442 29 100.0 32 ............................. GCGGCGTTTGAGGCGGAGCGGGAGCGCATCCT 128381 29 100.0 32 ............................. CCCAAACCATCGCCATCGGCCCGGACGGGGAG 128320 29 100.0 32 ............................. GCGGCGTTTGAGGCGGAGCGGGAGCGCATCCT 128259 29 100.0 32 ............................. GAGGTGGTAGCGTGGGCGTTCGCGGGGACTTT 128198 29 100.0 33 ............................. CTGGACCCGCCCCTCTCCCAGGCGAGGAGGTTC 128136 29 100.0 32 ............................. AGATGGCGTCCTCATAACGGAGGCGGATGTGC 128075 29 100.0 31 ............................. GGCGGTGGCGGGGGTGGGGCTCCTGCCCCTA 128015 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 GTAGTCCCCACGCCCGTGGGGATGGACCG # Left flank : GGAGAAGTTCCCGTAAGGGGTTTGGAAGCATACGGGCTAGCTTTTCTAAGGCGCTCCCGTACTGCTTTGTCGGGGCTTGGTGGTAGAGAAGCCTTCCCGCAGCGAAGAGGGCCAACGCCTCTACAGGGTGAAGGGGAGGAGAGGAAGCCCGAAGGGCATACTGCCCCCGGCCCACCCGTTCCACGGCGTAGCCCTGCTCCCGGAGGGCCTCGAGGTCGCGCTCCACCGTGCGCTCCGTGACCCCATAGCGGCGGGCCAACTCCCCAACCCCATGAGGGCGGAGGGCTAAGCGATCCACCAGGTCCATCAGCCGGGCGGTTTTGTTTTTCCGCTCCATGTTCTTCTCCAAGATACCGCTAGGCTATGCTAAGCTATGGGGGATAGCCTCCTTCTTCTCTCCGCCCCTTCCTCGAGGCTATGGGCACCTTGAAAAGTTGTCCTGGATCCTAAAAAGACACATAGAGGGGGTCCAGGGGTGTTTTTTGCCGTCCTGGTCAAGT # Right flank : GCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAGTCCCCACGCCCGTGGGGATGGACCGGTGAACACCTACCAGGAGCCTCGGGGCTGGCTGTAGTCCCCACGCCCGTGGGGATGGACCGTACCCCATGGCTACCTGGTCACGAGCCGCACCGTAGTCCCCACGCCCGTGGGGATGGACCGGCGGTACTGCTGTGCCCCCCGAACACCCCCGCGTAGTCCCCACGCCCGTGGGGATGGACCGGTTCTGGCCCAGGATGGCGGTGGTCAGGGCGAGTAGTCCCCACGCCCGTGGGGATGGACCGGCCAAGGCCAAGGCTGAAGCCAAGCCCAAGCCGTAGTCCCCACGCCCGTGGGGATGGACCGGTTGTGCCAGGTGTTACCTGGCACAACCTGGCGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 138491-140473 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB890619.1 Thermus oshimai DSM 12092 B043DRAFT_scaffold_3.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 138491 29 100.0 32 ............................. GGCTGCTATCCGCTAACGGCGGCCTAGCCAAG 138552 29 100.0 32 ............................. CTCTTCCAGGCGTGTTTGCGGATGAGGGCCAC 138613 29 100.0 32 ............................. ATGGAACGGGACTGGGCGGCCATCCCCCCGCC 138674 29 100.0 32 ............................. TCCCGGACCACGGTGGCCGCGGGAATCCCCTC 138735 29 100.0 32 ............................. GCGGGGCTGAAGTAGCGGTACTCCCGGGCCTC 138796 29 100.0 32 ............................. GGTGACCCCAGCTTCAAGCCCGCCCCCATGCC 138857 29 100.0 32 ............................. GTTTACCCGCCGCCCCCGGCGAAAGCCCACCA 138918 29 100.0 32 ............................. AGCGGCCGCGGCCATGCCAAACGGGCCTACGG 138979 29 100.0 32 ............................. GTGGACATCGGGAGCGTGGAGAGCCTGGCGAG 139040 29 100.0 32 ............................. GCCGCCCATTCGGCGTAGGGGATACCGGCCTC 139101 29 100.0 32 ............................. GGCCGGGTTCGCGAACCCGATGTCCACCTCGA 139162 29 100.0 33 ............................. GCCCCGTCCGGGTCCTGGGCCCGGAGGACAAGC 139224 29 100.0 32 ............................. CGCTCCGTGCGGTTTAGAAGGCGCTGGAAGAG 139285 29 100.0 32 ............................. CGCTCCTCGCCCCCTGGGGGAAAAGGTTGAAA 139346 29 100.0 32 ............................. GACCCGGAACCGGGCCGGGTTCCGGGCCACCT 139407 29 100.0 32 ............................. AGGTTCGGGCGGCGTTCCGCCAGGAGTACGGG 139468 29 100.0 32 ............................. GTTTTAGCGAATATTACCGATAGAGGGCCCTT 139529 29 100.0 32 ............................. GTTAAGGCGGCTTCAGAGGCTAAGGCTAAGGC 139590 29 100.0 32 ............................. GTACGGTTACTGGAAAACCCGCCTCGCATGGG 139651 29 100.0 32 ............................. GTTAAGGCGGCTTCAGAGGCTAAGGCTAAGGC 139712 29 100.0 32 ............................. GTACGGTTACTGGAAAACCCGCCTCGCATGGG 139773 29 100.0 32 ............................. TTTATCCTGAAACCCGAGCCCGATACCATCGG 139834 29 100.0 32 ............................. TAGGCCAGGGCCACCCCCGTGGTGAGCCCCAC 139895 29 100.0 32 ............................. GGAGAAATCCTCTCCCCGGTAGTTTTTTCCCA 139956 29 100.0 31 ............................. GGATTCTAGGCGCTATTGAGGGACGGGCCGC 140016 29 100.0 32 ............................. ACAAACCAATGCTCGGCTTCCGTCAGAATCGT 140077 29 100.0 32 ............................. GATGTAGCGCAGCTCCTCCTCTCCCCCCAGCC 140138 29 96.6 32 .........C................... GCTATCGTACGCCTGGTCCAGGACGATATTAT 140199 29 100.0 32 ............................. GCATTGTTCCGGTTACCGGGCCTAGCCTCCGT 140260 29 100.0 32 ............................. TAGGGGCGTTGAGTAGCGCTTATGACCCCCAC 140321 29 100.0 32 ............................. GTCTACGAGGCTCAGGTCTACGGCAACGGTTG 140382 29 100.0 32 ............................. CAGGTTCGCCAAAATCTGGACCTTCCCTACAT 140443 29 93.1 0 ......................A.....C | A,T [140467,140469] ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.7 32 GTAGTCCCCACACGCGTGGGGATGGACCG # Left flank : GGAGGAAGAAGACCCCATAGAGGAAGATCCCACCCGCCCCGGGGGCCTATGGGACCCCGAAGGCGAGGTGGAAGGGGGCGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTACCGAAGAGTCTTAGGGGTGAACTCACCCGCTGGCTTCTGGAGCTGGATACAGGAGTGTTTGTAGGCCGCGTAAGCGCCACCGTGCGCGACCTCCTTTGGGCCAAGGTTGTGGAGAAAGCCGGTGATGGGCGGTGCGCCATGGCCTGGCGCACCAACAACGAGCAGGGCTTTTCCCTTAGGCTTCACGGTTATCAAGACCGGGCCTTGAGGGACTTTGATGGTATAGTGTTGGTGGCGGTGCGCAACGCGGAAGCCGTCCGCAAAGCTGAAAAGCTAAAGCGGACCCAACCCAAGTTGCGCGGGGATCTTGACAAGAAAAACCTGGACTAACTCCTCTTAAGACACATAGCAGGGGGTAAGTTCGGGCTCTTGCCGTCCTGGTCAAGT # Right flank : CTGTAGACAAACCCGCCCCTTCTCCCTATACTGGTGGACGCTACGGGGAGTAGCGCAGCCCGGTAGCGCACCTCGTTCGGGACGAGGGGGTCGCTGGTTCAAATCCAGTCTCCCCGACCAAAGCCGGCCTCCGGGCCGGTTTTTTGTTGGGTATACTGCCCCCCATGGGCTTTTTCCCCGGCCTTGCCCTTCTCCTTTTGGGGTTCCACCTCCTCGCCGAGGGGCTTGCGGGGCTGAAGGGGCGCCGCCACCTCCTGGCCCAGGCCCTGGGGGGGCGGGCCCTCGGGGCGGGGGTCCTTTTAGGGGCCCTTTCGGGAAGCGGCACCGGGGTGGGCCTCCTGGCCCTGGGGCTTCTGGAAGGGGGGGTGGTGGGCCTTGGGGGGGCGGCCCTTCTCGCCTTGGGGGCCACCGCGGGGGCGGCCTTTTGGGTGGGGCTTCTGCTCCTGCCTGGAGGGCTTGGGGGGGTGTTCCTCCTTCTCGGGCTTTTTCCCTTCCTCGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 86795-86370 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB890622.1 Thermus oshimai DSM 12092 B043DRAFT_scaffold_6.7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 86794 36 100.0 39 .................................... TCCCGGGATACACGAGGATTGATGGCCCCAGGTTTTTAC 86719 36 100.0 43 .................................... TTGACTTCTTTCCCGATTAGGTACATCTTTTTCCCCCTTTCCC 86640 36 100.0 43 .................................... CAGTCCCATTCGCTTTGCCTAGAGATTAGGGGCCTAGACTCAT 86561 36 100.0 45 .................................... AATTGGAATCTTGAGCCGCGGTTTCTAACCATTGAGCTACTACGT 86480 36 100.0 39 .................................... CACGATTACCTCTTGGCCGATGGCCACTTGCTTGGCTGT 86405 36 94.4 0 .....................CA............. | ========== ====== ====== ====== ==================================== ============================================= ================== 6 36 99.1 42 GTTGCACGAGATGCTTCCCCGTCAGGGGATTGCGAC # Left flank : GGGCTTCTGGGCCACCCAGGGGGTGAGGACGTGCTTCTTGTGGAGGGCCTTGAGGTCCATTTGGGCTGATTTTACCCCATAGAGCAACACGGAACCCCAAGCCAAGCCGCCCCGAACCCTAAGCGCCCGCTTCCCTAAAAACCCTTGACTTTCACAAAGGAAAGCTTTGGCCCTCAAAGGCAAAATCCGAATGTATTTTTTCCATTAAGGCCAAAATGTTCTCTCCGGGAGCGGCTTCTCACCACCCTTGACCTACCGAGTCCAACGCTGGTAGCATGTTTCCAAAGCCGGGCATCCGGCGGTGGATCTTGACAATCTAGTCTCGTTCAGCACGCAAGTATGCGCATTTGGATTCTCATCGCACCTTCCTCTGCGGCTTAAGCATGGGCCTAAACCTCGCAAAAAGCCCTTTATTCGCCTTATGTATATTCCAAGCTTCATCTTTCTCACAAACCCCCTTTCAGCAAGCCTGTCCAGGACGGGGCTCTTTAGGGGGTAGA # Right flank : GGAGGCACCCCCCCGGGCCGGCCCGGGGGTGCGGTCTTTAGGGGCTTGATTTTTTGCTGATAATGGTTTATCATTCTAAACATGAGCCGGGTTCTTGCCCTGCTGGTTCTGGCCTTTCTCCCCGCCCTAGCCCAGGTGCAGGTGGCCGCCACCACCCCCATCCTGGCGGACCTGGTGCGCCAGGTGGGGGGAGAGAGGGTGCGGGTGGCGGGCGTGGTCCCCCCGGGGGCCGACCCCCACACCTTTGAGCCCACCCCCTCCACCGCCAAGGCCCTGGCCCAGGCGAGGGTCCTCTTTGCCAACGGGCTGGGACTGGAACCCTTCCTGCCCAAGCTCCAGGCCCTCCTGCCCAAGGGGGCCCGGGTGGTGCGGCTTGGGGAGGGGGAAAAGGACCTGATCTGCGAGGAAGCCCATCGGGAGGACGGCCACGGGGAGGAGGAGCACGCCCACGGCCCCTGCGACCCCCACCTCTGGCTGGACCCCGCCTACGCCCTGCGCTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGATGCTTCCCCGTCAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 10429-10095 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB890610.1 Thermus oshimai DSM 12092 B043DRAFT_scaffold_16.17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10428 29 96.6 32 ............................T GCGTCCAGTGCATCGTAGTAGGCATTGAGCCG 10367 29 100.0 32 ............................. CGGCCGGGGGAGCGGCCGACACCGGAACAGCG 10306 29 100.0 32 ............................. GTGGGAGAAATTCAATGGCAGGGAAGGACGCT 10245 29 100.0 32 ............................. TCCGGGAGGCGGCGGAGGCCTCCTCAAGGGAC 10184 29 100.0 32 ............................. CTGTAGCGGGTTTTAATCCACACTGCCGCACC 10123 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTAGTCCCCACGCCCGTGGGGATGGACCG # Left flank : CTCCGCCAGCACGCGGCGGTTCTCCTCGTCGTCGAAGTAGCCGAAGGAGGTGAACCAGTTGACCACGGCGTCGAAGTCTCGCCCGAACGGCAGGGCCCGCATGTCGCCGTGGACCCACTCGACGCCGACGCCCGCGGCCGCCGCGGCCTGGCGGGCCCGCTCCAGGAACAGCGGGCTGGCGTCGAGGCCGGTCACGCGGCAGCCTCGGCGCGCCAGGCGCACGGCGATGCGGCCGTGCCCGCAAGGCACATCCAGCACATCCGCCCCCGGACCGAGGTCGAGGAGCCGGGCGATGAGCTCGGCCTCCTTCTCGTTGCGCTCGTCGTGCAAGAAGGTCTCGTAGAAGTACAGGTAATCCTCGTCGAACACGGCGTCCCAGTGTGCACCCGTCATCGGCCATCCCCCCGCGGCGCGGCACCGGCCCCGGTGCCGGAGCTTTGGCCAAACTATAGTGCACCGCCCGCCGTCCGGGAAGGACCGCCAGATGGATCGCTGGACAG # Right flank : GAAGTGAGCCCGGAAAGGGCAACTGGGGACGGGGTCAGGGAGCCTTTTAGAGCGGGATATGGCCCATGGGTCAGGGGTCACGGGGAAGCATACCTTGCAGCCCCCGTTCTTCAGAACGGGGAGTTGTCACGGCTAAAGCGGGAAAGGGGGTCCGGTTCCCCCACGAAGGCGTGGGCGGTCATGGGGGAATGAGGACGGCTTGTTTGGGAGCCAGGTGGGTTTCGCCAGCAAAACCCCCTTGCCCTTGAGGACCAAGGCCACCTCCAGCCTTTCCCGGTGGTAGGGCAGGGACTGCTCCTTAACGGTACAGATGAGGACCGAGGTGCCCAAAGGGGTCTCCCCCACCCCCTGGGCGGCGAAGGGCCGGCCCGGGGGCACGGAGAAGTTGGCGAACTCCCCGGGGTAGCGGCGGAAGATCCCCTCCCCCGTGGCCGGAACCAGGGCCCAGGCCCGGCCGGCCAAGGCGGAAACCAGAACCCCACCTGCAACCTGCAAGAACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13287-12227 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB890610.1 Thermus oshimai DSM 12092 B043DRAFT_scaffold_16.17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13286 29 100.0 32 ............................. CTTGGGCCGGTTCAGCACGAGCACCACCCCCA 13225 29 100.0 32 ............................. GTCGGGGTGTAGCGTCGAGCGGTCCACGGTTA 13164 29 100.0 31 ............................. GCTGAACGCTCACCCGCTGAGGCCCCACAGC 13104 29 100.0 32 ............................. ACGGCTCGGGTCCAGCTCTCTCTCCAGGCCGT 13043 29 100.0 31 ............................. GCTGAACGCTCACCCGCTGAGGCCCCACAGC 12983 29 100.0 32 ............................. ACGGCTCGGGTCCAGCTCTCTCTCCAGGCCGT 12922 29 100.0 32 ............................. GCTTGATCTCTATGCCCTGGCTTCGGCTGGGT 12861 29 100.0 31 ............................. GAGGCGTGGGCTGCCTTGCGCGCCACGTGGC 12801 29 100.0 31 ............................. AGGCCACCCCCGAGGGGGTGCGGCGGATTGC 12741 29 100.0 31 ............................. GTGCCCATCTATGCCCCTCCTTCCGTTCCCC 12681 29 100.0 33 ............................. GTAGCGGTGATAACCCGCCAGCAGGGTGCCGTC 12619 29 100.0 32 ............................. ATGACGACCCCCCGGAGCGAGGAGAGGCAAAA 12558 29 100.0 32 ............................. CCCTGGGAACGCAATCCCAGGCGCATCCGCCC 12497 29 96.6 31 ............................A TCGTCGGCCCGGCCCAGGACGCTAAAATAGC 12437 29 100.0 32 ............................. CCCTGGGAACGCAATCCCAGGCGCATCCGCCC 12376 29 96.6 31 ............................A TCGTCGGCCCGGCCCAGGACGCTAAAATAGC 12316 29 100.0 32 ............................. AAGGCGACGGATTCCCATGGCCATGGCCTGGC 12255 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.6 32 GTAGTCCCCACGCCCGTGGGGATGGACCG # Left flank : CCCAAGGTGCTTTGGCCGTACCTGCGGAGCACCAACCTGATGGAGCGGTTTATCCGGGAGCTACGGCGGGGGACGAAGGTGCGGGACCACAAGTTTCCTAAGGAAGAGGCGGTGTACAAGCTTCTTTACCTGGAGTCGGAGAGGCAGGAAGGGAGGTGGGCAGAACGGAAACTAAAGGGGTTCTCGGAGGTGAAGGAGGTGCTGGAGAAGATGCTTCAGGAGCGGTATGCCCCCCGTACACAGACTCTTACACATAACTCTTGACACGACCCGGAACGCCGAGGCAATGCGAAAAGCAGAGAAGTTGTCCAAGTTATTTGCGAGGTACGAGAAACGCCGTGCCAAAGCTTCCGAGGGGGATCTTGAAAAGGAAAATCCGTAGCCACTCCCAACTAGACACATAACGGGGGGTGAGCGGGCGTTTTTGCTGTCCTGGTCAAG # Right flank : TCTTCCCAGACCGGGCGCTTCTTGCTGGGGTCGCGCAACAGCGCGGCCGGGTGGTAGGTCGCCATGATGCGGACGCCCCAGCGCTCGTGCCAGCGACCGCGCGCCTGGCTGATGCGCAGCGACGGCGACACGACGGCCCGCACCGCCGTCGAGCCCAGGCAGACCAGGATGGCCGGCCGGATGATCCTTATCTGCGCGTGCAGGTAGGGCAGGCAGGTCATCATCTCGGCGTCGGTGGGCACCCGGTTGCCGGGCGGCCGGCACTTGACGACGTTCGTGATGTAGACTTCCTCCCGCCGGAATCCGGCCGCGGCCAGGATGCGGTCGAGCAGCTGGCCGGCCTTGCCCACGAACGGCCGCCCCAGCTCGTCCTCGGTCTGGCCCGGCCCCTCACCCACCAGCATCAGGGCCGCCTGCGGGTCCCCCTCGCCGAACACGACCTGCGTACACCCGTCGCGCAGGCCGCAGCGGCGGCACCCCGCGGCGATGCGGGCCAGCTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //