Array 1 222291-223514 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NAXS01000034.1 Streptococcus agalactiae strain NNA020 contig41, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    222291	    36	 100.0	    30	....................................	TTCTATTCTATCTTCAATTGATTTACGTTT	
    222357	    36	 100.0	    30	....................................	AAATGTTTAATTCAATGAATTTAGGTTCAT	
    222423	    36	 100.0	    30	....................................	TTTTGACCCTGACGAAGATATTGTAAGAAT	
    222489	    36	 100.0	    30	....................................	TAACACTCAAAGAAATCGTTATTGATTATT	
    222555	    36	 100.0	    30	....................................	TGACCAAATGCAAGCTGTGATTGATGGTCT	
    222621	    36	 100.0	    30	....................................	AAGAAATTCGGTAGAGACCCCAGACTCATT	
    222687	    36	 100.0	    30	....................................	ACATGCCACCTTACTGCATGGTATATCGTT	
    222753	    36	 100.0	    30	....................................	TGAAAAATTACTTTATGTTGATACTCCTTT	
    222819	    36	 100.0	    30	....................................	GCGATGATGGTAAGTCATCATGGACAGCGT	
    222885	    36	 100.0	    30	....................................	TTTTACACACGATGTCAGATATAATGTCAA	
    222951	    36	 100.0	    30	....................................	CGTACCATCTATCAATTTACCGCAAGCTGT	
    223017	    36	 100.0	    30	....................................	CGTACCATCTATCAATTTACCGCAAGCTGT	
    223083	    36	 100.0	    30	....................................	CCGATTATTTCCTACATAATACGCACGTTT	
    223149	    36	 100.0	    30	....................................	AACTGTGTGATACTTTTCGTTTTTTTCTTT	
    223215	    36	 100.0	    30	....................................	TTTTATAAGTGATAGAGTGTGCAACACCGT	
    223281	    36	 100.0	    30	....................................	TTAAAAGATTTAAACTATCAAGCGTCAATT	
    223347	    36	 100.0	    30	....................................	TTCTAAATGCTGGTGACTGCTTTGCATAAA	
    223413	    36	 100.0	    30	....................................	TGGTTATACATTTACTAATCCATCAGCATT	
    223479	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        19	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:59.46%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.41   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//