Array 1 209300-207211 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTY02000001.1 Salmonella enterica subsp. enterica serovar Haifa strain HIY0259 NODE_1_length_588168_cov_27.387320, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 209299 29 100.0 33 ............................. TCCCCGAGCTTAGTTAGGTTTCGCTGAACGTGC 209237 29 100.0 33 ............................. GTGCGCGTGGAGCGCCTTAATTCAATTACTGAA 209175 29 100.0 32 ............................. ACCGGGTTGCCGTAGGTGCTGGCCCCCTTGAT 209114 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 209053 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 208992 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 208931 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 208870 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 208809 29 100.0 32 ............................. GCCCCTTATTACTCCGAAAATCCCAAAGATCA 208748 29 100.0 32 ............................. AAAAATCGGCTAACGAGGAAACGGCCTATAAC 208687 29 100.0 32 ............................. AAACGGCGCTCGTTTCAGCGGCAACGGCTGTG 208626 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 208564 29 100.0 32 ............................. CCGTCGGTGTTGATTTTCAGCTCTTTAGCTTT 208503 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 208441 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 208380 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 208319 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 208258 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 208197 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 208136 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 208034 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 207973 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 207911 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 207850 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 207789 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 207728 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 207667 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 207606 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 207545 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 207484 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 207423 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 207362 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 207301 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 207240 29 96.6 0 ............T................ | A [207213] ========== ====== ====== ====== ============================= ========================================================================= ================== 34 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 227600-225559 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTY02000001.1 Salmonella enterica subsp. enterica serovar Haifa strain HIY0259 NODE_1_length_588168_cov_27.387320, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 227599 29 100.0 32 ............................. TAAACACATTGACTTTATCGCGATAAGCTATA 227538 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 227477 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 227416 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 227355 29 100.0 32 ............................. GTTGTAGCGAATTGCCCGCTGTATCGTGTCGT 227294 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 227233 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 227172 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 227111 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 227050 29 100.0 32 ............................. GTGGTCCTCAAGTGAGTCTTTGGAAAAACCCA 226989 29 100.0 32 ............................. GGATCGGCAAACTTGTTTTAACGCCGGACAAC 226928 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 226867 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 226806 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 226745 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 226684 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 226623 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 226562 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 226501 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 226440 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 226379 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 226318 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 226257 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 226196 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 226135 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 226074 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 226013 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 225952 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 225891 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 225830 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 225769 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 225708 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 225647 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 225586 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATTAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //