Array 1 46634-53923 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTFY01000024.1 Rhodopirellula sp. SM50 Rhodopilula_apulia_SM50_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 46634 32 100.0 34 ................................ ATCGTGTCCATCAAATCTTCAGACGCGACTTTCG 46700 32 100.0 34 ................................ TAACGATAGGTAACTTCTTATGACGACGAAAAAC 46766 32 100.0 35 ................................ ACCAAGACTTCACGGCGAGCGCAAAGGAAGTTCCA 46833 32 100.0 32 ................................ CCGACAACGAAGCGGCGGCGTGGTGCGTCGCC 46897 32 100.0 35 ................................ ATTGACGGGCTGATCGAGCGAGCACCCGCGATCAT 46964 32 100.0 33 ................................ GTCGGCGCGTTGATCGGGCTGGCGCTGGTGGAG 47029 32 100.0 33 ................................ AAAACACTCGCCTACGAATACACCCCGTGGGAC 47094 32 100.0 34 ................................ ACAAAATCGGGATCACTCTTGGCGGCGTCTTGGG 47160 32 100.0 36 ................................ TCATTCGCGGTGCCGGAGTGGCCGATCGAAACGCCG 47228 32 100.0 36 ................................ AACGAAGCCAGCGGCGAGGCGGGGCCGCAACTGAGA 47296 32 100.0 35 ................................ ACCGATACGTCTCCTCCTCCGCCGCCGGTTTTATC 47363 32 100.0 35 ................................ TATGGCCAGCCGTGGGCGATCATGCCGCACACGCT 47430 32 100.0 35 ................................ GACCCCGCAAAAACGGATTCTTCGGCTTCCGGATG 47497 32 100.0 33 ................................ CGTGCCAGGATGTATCAGTAGCGGGCAAACGAA 47562 32 100.0 33 ................................ TGGAATCTTTTTGGCTGGCGACGCGCAGACGGT 47627 32 100.0 34 ................................ TACTACGTCTATGGACATGCCACTCAACGCAGGT 47693 32 100.0 35 ................................ ACGATGGCGGCAGGTGACTCGATCGACATCATGGC 47760 32 100.0 34 ................................ AAGCATTCATCCAGCTTTGCATTTTCGTTGTCCC 47826 32 100.0 33 ................................ ACTCCGTGAAGAAGTCGAAGGCCAAGAACCAAG 47891 32 100.0 35 ................................ ATCGCAAACCAAACCCGACGACACGCGCCAAACCT 47958 32 100.0 36 ................................ TGGAATGGGTGTGAGACAGTCAGGAGCCAGGATCAG 48026 32 100.0 37 ................................ TTTCTCGGGTGCTTCTCAGGGATGAGCAGGCAGCCGG 48095 32 100.0 35 ................................ CGTTTGGGACATCCTCGACCAACTGATCTCCGCGT 48162 32 100.0 35 ................................ CAACGGGGACGAAAAACTGGTCCGCGCCCGAGGGA 48229 32 100.0 35 ................................ CGCGCCGACGGGAAGTTCGGCAACGCCGGCGTCGA 48296 32 100.0 34 ................................ TCCCAAGCGCTGCCGTAGATGGTTGCAACAGTGA 48362 32 100.0 35 ................................ ACTGGATCGGCCATGCGCTGTCCTGAATCCGCCCT 48429 32 100.0 33 ................................ ATCATTGAGCGTGAACGGTGCGCCCTGTTCTGG 48494 32 100.0 35 ................................ CATCTGCCGACTGCCAACGGGATCATTGATGGCGT 48561 32 100.0 35 ................................ GACATCGACAGCATCATTCGCGCCGAGTTTCGCGT 48628 32 100.0 35 ................................ AAGTGCGCCTCGAGGGACCGATCGGCGTCAACAAA 48695 32 100.0 35 ................................ GGTCACGAGATCATCGACGGGAGCGACATCAGATT 48762 32 100.0 34 ................................ GTGATCGTGATGTCATGCGAGAGCGGTGTCACTG 48828 32 100.0 35 ................................ TTTGCCGACAACACCGGGCAATTGCATCACGATCC 48895 32 100.0 34 ................................ GCACAACCCTTGCGCGAATGATTGACAATCGCAA 48961 32 100.0 34 ................................ GGCAAGGTTTGCCGACGGTCGATGACTTGCGGCG 49027 32 100.0 36 ................................ TTCGCCGTTTTTGTGGTTGCAATATTGCAACCCGTC 49095 32 100.0 35 ................................ TCGTTTTTTTGTGCGCTGATGCACGGGCGGGGGGC 49162 32 100.0 34 ................................ TCGCTCGACAAAGAAACTGACACCAACCGCCAGG 49228 32 100.0 33 ................................ ACCAGCACTGCGAATGGTCCACATCGCGGCCAA 49293 32 100.0 35 ................................ GTTATCAGTGCCGCGAAAGCGTATCAACGCGGGCG 49360 32 100.0 34 ................................ TGCTCGATCGAGTTGTAGGACACGGAATCGTCAT 49426 32 100.0 36 ................................ GCCCGTCTTGGGGTCCGTCTCGTAAAGCCCCGTTTC 49494 32 100.0 35 ................................ TTTCTCGGGTGCTGCTCGGGGATGAGCGTGCAACC 49561 32 100.0 35 ................................ TCGGGGCTTGATCCCTTGTCGGGCATCACCTGCAC 49628 32 100.0 35 ................................ TTCTCGATGAGTGCATCCGATGCCGCGGCTTCCCT 49695 32 100.0 35 ................................ GCTTTTTTTATTGGTGGGTGGTCGCTGGCCGGTCA 49762 32 100.0 33 ................................ TCGGCGACACGACGGCGAAGCAGCTGGCACGCA 49827 32 100.0 35 ................................ GCGGGCAAGATCCGCGGCGAGTCGGTAAAGCCGGT 49894 32 100.0 33 ................................ ATGGTGCGGTAGTCCCAATCGCCGAAATGGTCT 49959 32 100.0 36 ................................ ATCGAACGGGTCGTCTTCTGGAATCTCCCCGGTGCC 50027 32 100.0 33 ................................ GTCCCCAAAGTCGCCGGCACGCGCGAAACGCGG 50092 32 100.0 34 ................................ AGCCCCATCGCCGAGCAGACAAACGTTCCGTCGC 50158 32 100.0 36 ................................ TCCGTTGTGATCTCCAACTCTCCGATCGCGTCGACG 50226 32 100.0 34 ................................ ACTCGCTTTTGCACCACTCGCGCGGCCGGCCGCA 50292 32 100.0 35 ................................ TTGCTGCTCTACCGGGACCATCGGCCAACCCTTTT 50359 32 100.0 33 ................................ AGGTGGTGGTGACACACGCATCATCAGCCCCGA 50424 32 100.0 36 ................................ ACGTTTTCGCATTAACAACATAGTGATCTACACCGA 50492 32 100.0 35 ................................ GCCTTGGGCCAGTTGATCTCATCAAACGGGTCATC 50559 32 100.0 36 ................................ GCCTGATCCTCTTTCGTGGCCGCACAATAGACCTGC 50627 32 100.0 34 ................................ ATCCGCAGGCGTTCCCGTGCCTCGTTCGGTGACA 50693 32 100.0 32 ................................ ATCGTCAATCGGTCATGGCTCGCGATGACAGA 50757 32 100.0 34 ................................ TTGGTGAAAAACTCAGTTGTGTCGGCAAGCCTTG 50823 32 100.0 37 ................................ ATCATGTGGTGCGAACCGATGATCGCCGAGTCGCCAG 50892 32 100.0 35 ................................ GCCAGTACGCCGCCCTCTCTGCCATGCTTTTGAGG 50959 32 96.9 36 ......A......................... ATCAAAATCTGCCAGTGCGGCGAACCGATCGTGCAG 51027 32 100.0 34 ................................ ACTAAGGTGGACGAGTGGCACGGGATGATCGGGC 51093 32 100.0 33 ................................ TTTATAGCGTGATGCTTGTGCTGATCAAGCCAA 51158 32 100.0 34 ................................ TCGCCTCGTGCTCGATACGCATGCCCGATTTTGC 51224 32 100.0 36 ................................ GTCTGCCCATCCCGCCACCGTCACAGTCGGGTGATT 51292 32 100.0 35 ................................ CGTTCAGATCCAGCCCACCCCAGCCACCAACCGGC 51359 32 100.0 35 ................................ ACATGCACGATCGAATTGACGAACGTGTGCTTAAG 51426 32 100.0 33 ................................ GCCTTTGACGTTGAACGCAAAATTGCACAGATC 51491 32 100.0 34 ................................ AGCTTACTCCTCCCGGCAACGGGCCTCAGCTTGA 51557 32 100.0 34 ................................ TGCCGTAATCCGGCCCCAAGGATCTCATGCACGT 51623 32 100.0 35 ................................ TACAGGTCGAGTCTGATTGGGAGCCAGGATGGATG 51690 32 100.0 35 ................................ ACTTTGCCGTACTTTTTGATCAACGTTGCCGTGTT 51757 32 100.0 35 ................................ GTTGGCTTCGAGTTGCTTTTGCATCAGCTCGTTGT 51824 32 100.0 35 ................................ ATGGTCCGGTAGTCCCAATCGCCGAAATGGTCTTG 51891 32 100.0 37 ................................ ACATAGAAACCGCGTTGTCGACCGCGTTGACGATCCC 51960 32 100.0 34 ................................ ACCGGTCGGCCTGGTCGTCGCCGCGATCGTCGGA 52026 32 100.0 35 ................................ ACACTGGCGACCGTCGCCGCGGCCGAAATCGCCGC 52093 32 100.0 36 ................................ TACAGGCGCAATACGACGCGTTGATCGGTACGGAAG 52161 32 100.0 35 ................................ GCTTTTTTGTCGGACGCCGCGACGTACAACACGAA 52228 32 100.0 34 ................................ ATCGATGCAAAACGACACTTTCGCACCCGTCGGA 52294 32 100.0 33 ................................ GCCGCTTCGATGATGCGGTCCATGTCTGTGCCC 52359 32 100.0 35 ................................ AGCTGCTCATAGGCCTTGCCCCACTGCTTCTCCCA 52426 32 100.0 38 ................................ GGCGATTCGCGTTTGGAACGTGGCCGGTTGCTCCGACT 52496 32 100.0 35 ................................ GTCATCGATGGCCTTATCCAGCGACGAAACCAAGA 52563 32 100.0 33 ................................ ATTAGGGTGCTGCACCGACGAATCTAGCTCGAT 52628 32 100.0 37 ................................ AGCGTAAGCCTGGGGAGCGATTTACAGCCGCCGGCAT 52697 32 100.0 34 ................................ TCGACGCGCCAGTTTCGATGCCCGTGATTGTCGG 52763 32 100.0 35 ................................ TACGTGAACGGGGAGCTCATAGGGACAGCCACACC 52830 32 100.0 34 ................................ GTTGATCTCGAACGGCGACACCCGCAAGATGTGA 52896 32 96.9 32 ...........C.................... CGCAGACGCTGATGCCGGCTCCGTTAAGTTGC 52960 32 100.0 33 ................................ TGAGCCGTCGCCGGATCATCGATCGCCTGGGAC 53025 32 100.0 36 ................................ GTCTTGGGCGATGCGGTAGTTGGCCGTGAACGCCGC 53093 32 100.0 34 ................................ GAAATCGTGAAACTGTTATCAATTGAAATCGTAT 53159 32 100.0 34 ................................ ATTTTCGAATCGATCCGCAAAAGCCCGTTTGGTT 53225 32 100.0 35 ................................ ACGAACCCGACAGCAATCACGGTGAGCGCATGACG 53292 32 96.9 33 ..T............................. AAGACAAGCAGACAACGATGCTTCGTAGATACC 53357 32 100.0 35 ................................ ATGTGAACGACTTACGGAGTGACAGGTGAGCGACA 53424 32 100.0 35 ................................ GCGGGAGACAACGGAGTCAGCTACACGTACCGGTT 53491 32 100.0 35 ................................ GTCAACGGTTCGAAAGTCGGGGTTAATACTCATTG 53558 32 100.0 35 ................................ AACTCCTTGAATTGCCGTGGCGTGGCTCTGCCGGC 53625 32 100.0 36 ................................ ACCAAAGCGAAACCTCGCTTGGATGTCTAAATGCGT 53693 32 100.0 34 ................................ TCATTCAACGACGACATTGTCTTAGAGCTTTTGG 53759 32 100.0 36 ................................ GCATCGACAGATTCTTTTGCGAGAAGTGTTTGGAAG 53827 32 93.8 34 ..............A..G.............. TATCGATTACCTACGACAGATCGATTTACTCGAC 53893 31 81.2 0 ......T...G........T.....-..C..T | ========== ====== ====== ====== ================================ ====================================== ================== 110 32 99.7 35 GTCGCGCCCCATGCGGGCGCGTGGATTGAAAC # Left flank : TGGAAGTAGTGTGTCATGCATGTGTTGGTGACTTATGACGTTGCGACGGTGAATTCGGCGGGCAAGCGTCGATTGCGTCGAGTGGCAAAGATATGTCTGGATTTCGGTCAGCGGGTGCAGAATTCGGTGTTTGAGCTGCATGTCAATCCGGCGCAATGGGCGGAATGCCGCAAGCGATTGATCGAGGCCTGTGAACCGTTGGAAGACAGTTTGCGGTTCTATCAGTTGGGAAATGACTACGGCGCAAAGGTGGAGCACGTCGGTGCCAAGCCATCGTTGGACACCGAAGGTCCACTGATCATTTGAACGCTGCCGGTCATCATCCGCGAACCCCAAGTGGTGACGCGATTCCGGGGCGGTTCGCGAATGCGTTTCGGCCGGCTAAATGCGGGGGCAGATTGCGCGTCAAGCTAAACGCAGAGGGAAATACGCGACAAGCCGTCCCGGTTCGCGGAACATTGAACCTAAACCCCGCCTCCGCAATCGTTTATACTCCCGGA # Right flank : TGCTGGGCGATGGTTTGCGGCATGGGGTTGGCTTTGAGCGTGTGTCACTCACTTGATTGCCTGGCAGTGACTCGCATGGTCCGTGACGGCAACTTGGCCTGCTTGGGGCGCGTTGGAATTTAACGGAATACAAACGCCAAGAGCGCAGTCCCGATCAGTGACACGACGATCGAACCGAGGCAACCGAGTCGGCTTGAAAAGAATGCAAACATGTTGGAGGACTCCTGTCAAAAAATTGAAATGGCCTCTCTGCAGTAAGCCGCGAAGAAACGAATCCCAGTGACGCCGGTCACGCCGCCTAAAACGCGTGCCTTTGGGGACCGGGCGGCACTGGCGGGGATGGTAATGGACGGGGCGGTACTGGAGCGGGTGGAGGACCAGGCTTGGGGGTCGGGCTCGGTCGCGGATTGGGCAAAGGTTGCGGTGGTTTCACCTGTGTGATGGACATGGCATGTTTCGTTGTTGAAGTCTGGTAGTCAAACGGTTCAGCCGATGAGGTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCATGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //