Array 1 73451-72822 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899147.1 Porphyromonas gulae DSM 15663 F452DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 73450 36 100.0 30 .................................... ATAAGAAAAGAGGCTAAGAAACAAAACCTT 73384 36 100.0 30 .................................... ACAAGGGAAGAAAAGATGCAGAAACTCAAG 73318 36 100.0 30 .................................... AGGAGAACTCAACTACAGACGGCGGGACAC 73252 36 100.0 30 .................................... TATAACTGAATATATAAGGTCATTATGAGA 73186 36 100.0 30 .................................... CGATCAGCAGAATCCAAGGGGATATTCCGA 73120 36 100.0 29 .................................... GCCGAGGAGTCTATTCTTTGGTTCAAGGA 73055 36 100.0 30 .................................... GCTGCAAGCCCAGGGGCAGGCGGCCCTGTT 72989 36 100.0 30 .................................... TTTTAACTTAGAGTGAGTATTGTGATACTT 72923 36 100.0 30 .................................... AGCGCAGTTCCTCAATGACAACAACAACAA 72857 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : GTTTTCATTTTGTATATAAATCGTTTTTGATTTATATATAAATAGATTGCGAAAAATATATAGATTGTAAGCCCGATTGATATAAATCGGACACCTCGAAAAGCCTTTAGCGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTTTTTCGAGGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGTTTGCATCAGCCATACGCAATGCCGGTATATAACCACACATAGGCCGAACGAAACCGGCCGAATACGAATGCTGGGAAGAGAGGAATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAAAAAGGGAAAGCACTCCCGGCACAAATTCACCGAAGAGGGGAGTACCTCGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGCGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGTGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTACGTTCCTGCCGGTTCGCACTCAAAAGTTCAAAGTTCGCCCCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACGGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGCTATCCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTTCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAACACCGTTGCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAAGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 32912-32656 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899151.1 Porphyromonas gulae DSM 15663 F452DRAFT_scaffold00005.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 32911 37 97.3 36 ................A.................... GGCTACAAGGGGCAATGTCAATCCACATTTATTGAA 32838 37 100.0 36 ..................................... AGCAAAAGCCGAAGTCTCAAGGTTTACTGGCATCTA 32765 37 100.0 36 ..................................... AATTATTGATATGAATTGGTATGTTATGGGTTTAGC 32692 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 99.3 36 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : AGATGCAGGGGTGAAGTTCTCTTCGATGCACTATACTTTCCAAGGCAAGGACTATCCATACGGTTCTTTCCCGACAGAGAGCGAATTGGGAGCGCATCTGTCTGCCATCAAGCAGGATATTTTGGGTCGTATCCGAGATGTTGTAGAAGGGTAAGAGCTTAGAACCGGCTTCGGAGGTCTCGGAAGTCTCGGATTTCAATTATTCCGATCGGATTTTCTCGAACCGCAATTGCTGCGATTGTGGCGCGTGTTTTCGGGAAAAGCGGCGCGGGATTTTTTTCGCTGTGGCACGGGAAGTAAAAAATTCTCGAACCACAGCGAAAAAAATCTCGCGCCACGTTTTTCGGAGCATCGAAATAGAAAATTATGGTGCGCAAACGGCCTTGGCTCGCACACAAGCGGAAGGCTGTGATTATGCTCTTATCTTGTGCAAAACACAATATTAACCGCTCCAAAATCTAACTTGGAAAGTCCAAGTGATGATGAGTAGAGCATCAAGA # Right flank : CCTTTTCCTCCGGCTCTTGGGTGGGGTCGGATGTCCGCTCATCCAAGCTGCGGTATAACAATGCTGACAGAGAGGAAGAAAAAACACCTTGTCTCTCTTAGCCGTCTGTGAGGTAACAGCCTCTACCAACTTGTCCATGGTCAGCTCTCGCAGGCTGCAGATGAATACCGATTTATTGATGCGTACACCACACTGCTCCAATATCCGAGCGACCTTGCGCCTTCGTCTGTTGGAGGATATGTCGTATGCAACCAATAGTTTTTTGTCGTTCATAGCTCTTTCCCGCTCTCGGTCTACCATTTGGGGGTATAGAATTTGATGCGCTTCACCTTGCCACAGCAAAAGGCTCTCACGTCTTTGGTTTGCAGCTTCATAATATCGGAGAAAAGCTTTTCCCCGGATCGATAGTATTCGGTAGCAAACCAGCGTTCGTTTATCTTCGTTATGATGCGGCTGCGTGTAGACATATCCAACAGCCCTTTGTTATCCTGCCCCACATC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 56822-56596 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899152.1 Porphyromonas gulae DSM 15663 F452DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 56821 30 100.0 34 .............................. CACAAATTTGTACCTCACACCGGCAAACAGCGTC 56757 30 100.0 36 .............................. GATTCAATCAAACAATGTCTGAAATAATTAAAACCT 56691 30 100.0 36 .............................. CTATCGCTAAAACTCTTTTTCCCATAGAAGAAAGGC 56625 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : GTATGGTGCAATTGAAATCGTTAGGCGTCAATTCCAACTTCTTCACAAACTCCGTTTTAATTCCTGTATGGTGCAATTGAAATTTTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAATTCCTGTATGGTGCAATTGAAATAAACAGGCATTTTCTATTTTCTCGCGGAGGACACC # Right flank : CCGTCACAAATATAGGTTTTTCGGTTTGAATGTGAGAGGGTTACGAGAAAGCGAAACCCAATATTCAGACATTATAGTTGTCGATGTCCGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCAAGGGTTAATCATGACAAAAGGCTGGACGAATTTGTTCGAATCGACGCTTCAAAAGATAGATGAAGGGAACTGTATCGTGCTGTATTATAGGAATATATCTGTCGCAGCTCGCTCTTTGCCGATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCCTCTTTTTCCATGATTCTGGCAGCTCTGTTCTTCAGTTCTAAGAGTTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATACTTTCTGCACAGTTTTAGCATTTTGCCAACGCGCTTTTCCCCGATATCGTACACTAAAAT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 63301-61486 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB899152.1 Porphyromonas gulae DSM 15663 F452DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 63300 30 100.0 36 .............................. TCGACCCCGAGGAGAGAGCAAGATACCTGCTTGAAT 63234 30 100.0 37 .............................. CCGAATCAATCCAAAAAAATACCGACGCCATCATCGT 63167 30 100.0 37 .............................. ATCCAGCTTCAAAAGAGTCCAAACCAAGCATGACTGG 63100 30 100.0 39 .............................. CTCTACGCTAAACATTAACTTTATCTCAATACTCTCTCC 63031 30 100.0 37 .............................. TATAGGCATTGCGGAGCATTTTATCCGCATTGATTTT 62964 30 100.0 36 .............................. TCCGCGAACTCCGCCGATTCGCCGATCGTAAACGAC 62898 30 100.0 34 .............................. AGCCTTGTCCATATTGATTCGTTTTAGTCATTAG 62834 30 100.0 34 .............................. TGAAGAGGACACATCGTCCTTTTAACTCATCGGG 62770 30 100.0 36 .............................. GTTTGCCAGATGCAACAAGAATGTTCAGCGTTATCG 62704 30 100.0 37 .............................. ATACCCTGCATTTTGGGCCGGGCGAATCCGTTTTGCT 62637 30 100.0 35 .............................. AAGAAAATGACAACTGCAGAAAAATTTAGAGAGCT 62572 30 100.0 37 .............................. ATCGCTTTCAAAAGCGAGAGCCTTCCACACCATCACG 62505 30 100.0 36 .............................. TGTGTTATATACGAGGTTTGGATTTTGATTATCTGC 62439 30 100.0 35 .............................. AAACAGTCTACGTGGACAAGGTGAAGACGGAGTAC 62374 30 100.0 36 .............................. GAACAATGGCTTTTCTACCCTCCGCGGATAATAGGT 62308 30 100.0 38 .............................. GACCGCTGCCTCCGTTATTTCATCAATTTGTTTCCATT 62240 30 100.0 36 .............................. CAGATTTGGTTAGACATATAAGAGCCGGGAACTCAA 62174 30 100.0 36 .............................. CTCTTTGAGGGCAATTATATCCCCGTTCCCTATCTC 62108 30 100.0 36 .............................. TGGATCCGTAATTGTTATAATGGGAATGATTTTTAC 62042 30 100.0 36 .............................. TCCGTTCCGCGCAAACTTGATATTGTGCAATTGCTT 61976 30 100.0 36 .............................. TGGATCCGTAATTGTTATAATGGGAATGATTTTTAC 61910 30 100.0 36 .............................. TCCGTTCCGCGCAAACTTGATATTGTGCAATTGCTT 61844 30 100.0 36 .............................. AAGAAAACGTAAGATTTGCTTGTCCGTCCAAGTCTA 61778 30 100.0 36 .............................. CGAATCGATCCAAAAAAATACCGACGCCATCATCGT 61712 30 100.0 34 .............................. AAGGGCGTGTATTCTTAGAACCTTCTGCCGGTAG 61648 30 100.0 37 .............................. CCATATGCGCAGCCGTGAAAGAGTGTAAGGCCGTCTA 61581 30 100.0 36 .............................. AGACAGTACGCGCGCTGGCAGGCGCAAAAAAAACGG 61515 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 28 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TACGTCTGTTGTGTCCAAAATTTCCTCCCAAGGCTTTCCTTCCCAGTCGCCGAAGTTCATCTCCTTCAGCCGATCGTCTCGGATGGCATCGGGATAGCCGCAAAAGGCCGCCAGCTTGGCTGCACGCTGCAAGGGACTGGTAAAGACAGCCTCCGGATCGAGGCCTTTGAGACGGGCACACGCCGCCGTAGCCTCCTCTTCGAAGGTATCGCGAACGTCCACATCGGTGAATCCGTAGCAGTGCTCATTGCCATTGAGCAGCACCGAAGTGTGGCGCATCAGATATATTTTCATCAGTGGATTATTAGAGTATCGGTCGGAAAAAAGCCTTCCGAGTCCGACAAAGATAGTAGAAAGAGAGTGCATCTGAAAACAGACCAATCGCGTGCTATCGATCAACTGAGAGGATGGAAGTGCTTTTGTATTCCGGTTCGGAAAATTGCCCGATCTGCATCCGTAAAAACGTGGAGCGAGAATTTTTTCGTTTTGGTGGAGGACTT # Right flank : ATCCGTGTTGAAAAAAAGGAGAACGCAAAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //