Array 1 8613-7994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRX010000006.1 Listeria booriae strain FSL L7-1385 NODE_6_length_367018_cov_37.987641, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 8612 30 100.0 35 .............................. AACCACGTCGTTCTGCTAGGTAACGCTTTTCCGCC 8547 30 100.0 35 .............................. TAACGACACTTGATATCGCTTTGTTTTCCATATTA 8482 30 100.0 35 .............................. AAAAACCTTAAAAAATGTGTGTGGCAAAATTCGCG 8417 30 100.0 36 .............................. AAAATGAAAACGAACGATTGGCTTATGTACGAATCA 8351 30 100.0 35 .............................. GCATTACTTCGCCATTTTCGTCTAGTAATTTGCCA 8286 30 100.0 36 .............................. AAGTTTTGGCGATTCCCCCGAGATTCCGTATACGCC 8220 30 100.0 35 .............................. TTATGATGCTCGGGCACGCAGGTTACTGGATTGAT 8155 30 96.7 36 .............C................ TTTTCAAAAGTTGCTTGAGTGCCTAGCTTCGGATTA 8089 30 93.3 35 ........T........T............ CAAACAGATGTGGCATGGGCGGAGTTTGAAAGATG A [8071] 8023 30 76.7 0 .................A....TCCAG.C. | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 96.7 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCATTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGAAAGAGGGGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGGCATCGACAGATTTTTGTAAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGTTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : AGATTGCTCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCTAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGAATTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTATTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCCATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGGA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 128164-129701 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRX010000004.1 Listeria booriae strain FSL L7-1385 NODE_4_length_416396_cov_36.132655, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 128164 30 96.7 36 .................G............ TTGTCCAATACAGCGTCTTGAATTGGCAACTGATAA 128230 30 100.0 34 .............................. TCTTACCGTCTTGATCCACAAGTTCAGCACTTAC 128294 30 100.0 35 .............................. ACACTAGCTAAAAATAGTCAAGTGTATCGGGCAAA 128359 30 100.0 36 .............................. CAGAACAACGGGATGCCATTCTAGGCTCCATTCATA 128425 30 96.7 36 ............................T. TCGTCTGAACCTATCATTTAAGCGTCATATAACAGA 128491 30 100.0 35 .............................. ATCCGATTCGCCGTGTAAGGCAAAAACATCAATAT 128556 30 100.0 36 .............................. CCTTTTTCCGAAGTAGCGTTTGCTAGTACTTCCACC 128622 30 100.0 36 .............................. TCATCGGTATCAATAGCAATACGGTTCTCCGTATTC 128688 30 100.0 36 .............................. TTCGCTGAAACTAACTTTCTAAATCCTGACTTGCTG 128754 30 100.0 35 .............................. TTTCGTCTAACATCGTCTTAAACTCGCTTGTTTTC 128819 30 100.0 36 .............................. CATGTAAAGGATTAGCTGTTATATAGAAAATTTTTC 128885 30 100.0 34 .............................. TTTTATTTTTACCTCCTTTATAATAGTATTTTAC 128949 30 100.0 35 .............................. TAGCAATTCGTATTTTTCCCAAGCGTCATTTCTAA 129014 30 100.0 35 .............................. TCAACATGTATGTCGCCTGTTTTATTAATTTGAGA 129079 30 96.7 34 .................G............ TAAACAAACAAAGGTCTCGTTTAAAAAATAATGG 129143 30 96.7 35 .................G............ AGGGCTAGCTCGGACACTTTGCCCTTTTGGCGTAA 129208 30 93.3 36 ............T....G............ GTGAAATTTGCCGTGACAGATAGCACAGTCAAAGAT 129274 30 93.3 35 ............T....G............ GCACCAGACATAGCTAGATTCTTGTATGGCGAAAC 129339 30 100.0 37 .............................. GACGAAGGGCGGGGCTCTTCTAATCCAGTAGCGCATC 129406 30 100.0 37 .............................. AACGCTGTAGCACCTCCAGAAATGAAGCTTTTGGAGA 129473 30 100.0 35 .............................. TATGTTTCATGTACTGCTCTGCAGCATGTAATACG 129538 30 100.0 37 .............................. ATGGGAACGACTATTATTCATGGCTATGTAAATGGTG 129605 30 93.3 37 T................G............ AAAATAGGATGACGGTAGATCAAGGCCAAATGGTAGA 129672 30 93.3 0 .................G......A..... | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 98.3 36 GTTTTTATCTAAGTAATATGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCCTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCATGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCACTACTTGTCAAATTGCGAATGGAATTAGACCAGTATATTCGTGAGGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGAAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TTAGGAAAAGGGCGCACTTATACACCCTGCTTTTTCCTGAAGTACTATGAAACATAGCTCGGTCTGTTTAGCTACGATTGCTTTGGTAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCCAATAGACTCTATTTTCTAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTGTTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACTTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTAT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 50915-50094 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRX010000009.1 Listeria booriae strain FSL L7-1385 NODE_9_length_119716_cov_30.927331, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 50914 30 96.7 36 ................C............. GATGTACGCAGAGGCAAATTTAAATCGTATAAAAAA 50848 30 96.7 37 ................C............. CGCCCCTCCGCCGAGGAAAAGGATGGATATTAATGGG 50781 30 96.7 36 ................C............. ACATCGTAACAATTTTTGTTTTCCCAACGCCGCCTT 50715 30 96.7 34 ................C............. TTCATCCAGCCAGCGACTGTTTGTTCTTCTTTAA 50651 30 100.0 36 .............................. AAGGTATTGTTCGCTTTTATTGAGTTTGGCTCTCTC 50585 30 100.0 36 .............................. GAAACTACTATCCAAATCTGCAACAATATCTTCGCC 50519 30 100.0 36 .............................. TCGAATTGATGCCATTGCCTAATTCTCCAAATTTGC 50453 30 100.0 37 .............................. TAAGTACGTAAATCAGCATCCGACACATAGATATGGA 50386 30 100.0 36 .............................. CAGCAACTGCAATACAACTCACTACGACTATTTTTC 50320 30 93.3 36 ...............G....T......... TTTTTAAAGTATAGTAAAATCAATTCTTCGGACTTT 50254 30 90.0 35 CG..................T......... CCGCGAATATTCGTCAAGTGTATCAGCTGATCAAA 50189 30 100.0 36 .............................. GGAGCAGTTGCATTTGATGAAGAACATGCCTATGAA 50123 30 80.0 0 .................C.AT...A...TC | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 96.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGACGCGGATATCGTTCTAATCGCCGTCGGATTCGCAGGCACAACCAAATCAGTATTCGAAGACTTTCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCAGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGTTTAGGGGGAGAAGGGATTAGGATGGCTTTCGAGAAGTAGAAAGAAATAAACAAGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTAAGAGGGTACCT # Right flank : CCCAAAGAAGGAGAGATACCAAATGACTATGGAAAAATTAATACTATGAGTCACCATAGACAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCGGGAGTCATAGCCGGAGATGGCGAAGAACAAGATGCTTACATAATTTCTAAAAATGCAACAGCCCCACTCGACATATTTGAAGGAATACTCATCGCCGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAGGAGATTTCCGAAAAAACATATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTCCTTTAACAAATACAACGGTATAAACGCTCATCTTCTCACAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAGACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAACC # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAACGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //