Array 1 1626559-1624514 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP012330.1 Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 strain JCM 1200 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1626558 33 100.0 34 ................................. GCCCTCGTACCCCCATACTGGTAGGATGTTGGTG 1626491 33 100.0 36 ................................. ATGTCACGAAACTTGACCGTGAGATGGCATCGCGGC 1626422 33 100.0 33 ................................. CTGCTCGCGAGCGCCATCCTCTGGGCCGACAAG 1626356 33 100.0 34 ................................. AACATTTTCCGTGAGGAAATGCGTATGGCATCCA 1626289 33 100.0 34 ................................. CGTATTTCGCAATCACAAGGGACGACAACAAATT 1626222 33 100.0 35 ................................. CGAGATAATAGCGAGGGGTATCAGCGTTCGAGGCG 1626154 33 100.0 34 ................................. ATTCCGCATGCCGCTATTACGGACACGGCCAACA 1626087 33 100.0 35 ................................. CGTCAGAACATTGTTCTTAGTCATCAAATCATTAA 1626019 33 100.0 33 ................................. ATACGCAGCGCAAGGCGACTACCAGAACGCCAT 1625953 33 100.0 33 ................................. CTCATGCAGGACGGCGACCCGCTCAGCGCCGAC 1625887 33 100.0 36 ................................. GTTAGTCACCTGCGCTTTTTGCTGGATGAACTTATC 1625818 33 100.0 33 ................................. AGTCGCGTGACGGTCAACAATTCCGGCGGATAC 1625752 33 100.0 34 ................................. ACACCCGAGGTGATCGCATCGTGGAAGGCGTTGC 1625685 33 100.0 33 ................................. AGGTATTTGCCGATGTCGAGGTTGCTGAAACTG 1625619 33 100.0 34 ................................. ATTGCGTTCCGGTTCGACGTGCCCAGACGGTTCT 1625552 33 100.0 34 ................................. TTCCACCCGAGGTTGATTTTCCGGCGCGAGGTTG 1625485 33 100.0 34 ................................. ATTGCGTTCCGGTTCGACGTGCCCAGACGGTTCT 1625418 33 100.0 33 ................................. TCATCGGGATTAACGCCGAGCCCTTTGACATGA 1625352 33 100.0 33 ................................. ATGGCTTCGAGCACGTCAGCTGGAATCAGTCTC 1625286 33 100.0 34 ................................. ATTCCAGATCTGCGTTTTTGTCGTGATGATTTTG 1625219 33 100.0 36 ................................. GCCCATAAATCCCAGCATTGCGCCCCGTACGCGCCG 1625150 33 100.0 36 ................................. AGGCTCGCTCTATAGTTTTCGTCGAAAATCGGATAA 1625081 33 100.0 35 ................................. AACACGATATCCAGTTGGGTAACGCTTACATGGAA 1625013 33 100.0 35 ................................. AATAATCCCCAAGCGCAAAACCTGATTGTCGTCGT 1624945 33 100.0 34 ................................. CTGACCGACGTGGCAATCGCCAAGCAGGGCGGCG 1624878 33 100.0 33 ................................. TAAAAAATAATGGGGAGTATGACGTCATGACCG 1624812 33 100.0 34 ................................. ATACACTTGTTCACACCGTGCAGACGCCGGATAT 1624745 33 100.0 33 ................................. ACGCAGGTCAGCCCGATCCTCGACCGCATCCCC 1624679 33 97.0 33 ....T............................ AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 1624613 33 97.0 34 ....T............................ GATACGATTAAGATGATTTTCGAGCGTCGTATCA 1624546 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 31 33 99.8 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : CGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTTTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //