Array 1 1666-628 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABYK01000111.1 Limnospira maxima CS-328 ctg159, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 1665 37 100.0 45 ..................................... ACTGCTCCGTAACTGTCTGTATAGGTGGTAGTCATGTTGTGTTGA 1583 37 100.0 40 ..................................... GCTTTTTCTAGGGCTTGTACGAGGGCTTTGGCGATGCGAA 1506 37 100.0 38 ..................................... GCGAAGTCGTCTATTGCCTACCTGTTTCCTATTATTCT 1431 37 100.0 42 ..................................... ATCTCGCTTCTTTTTGGATTTTGATAGTGCGTGATGAGAACA 1352 37 94.6 36 ......................CA............. GTGGTCATGATGACTTCTCCATCTAAAGAACAATGT 1279 37 75.7 37 .G.TTT..TA...C........CA............. CTCGGGGCTTAAATACGGGTGGTTGGCCACTACCACC 1205 37 78.4 36 .CT.T..TT....C........CA............. AGCACCTCGTTGTGCTGGCCGTAGTTCACTTCCTCA ATCC [1192] 1128 37 73.0 39 AA.TTT..TA...C........CA............. ACCCTCTTTTGTTTTCCTGACATTTGCCCCCCATGGGAC 1052 37 100.0 40 ..................................... TGCCAATGGGGTATAACCCCTTCTCAGGGGAACCCTCTTC 975 37 100.0 43 ..................................... ATAGCGCTCTTCGGTACTCCTGAAATCCATCCTCCTTATAAGG 895 37 100.0 44 ..................................... AATGTGAACATCTCTTTTCCCTCTTCAAAAAAATTCAAAAAAAA 814 37 100.0 36 ..................................... ATTAGGAAACTTTTTTTAAACTAACGTCAATTTCAC 741 37 100.0 40 ..................................... CATGTTCATGATTTTACTGTTAATCAAATAAGTCTTTCAG 664 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 14 37 94.4 40 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : TCGTTGATTTGGTGGCTAATCTTGGTGACAGGTTTCCCGACAGCCAACTACACCTCACGCCACCCCTAGACCATAGCCCACACCTGGGCGATTTGATTTGTACTTGGGCGGAATCTTGCCTCTAGGATACCACCTGCCTGCTGCAGTGGGTGGTGATTCTCATAATTCTTTCCCTTTTGAGAGGCGATCGACACTCCCTAATGGCTCTGTTGCCTTGGGGGTAATAGTTGCGGGGTTTGTAAAGTTATATTACAGATTCTCATAACCTCGCGCGAGTTTGAATAGGGCGATCGTTCAAGTAAACTGGAGCCAACAACAGAAAAGTTTTTGTTTTTGGGGGTTGACAGTCTGGCGCTGTCTCTGATAGTATTAATTTACGTGAAAACAAAGGAATTTGCTTCGACAAAAACAGCCTGTAAAGTTTTGTTAAGCACCTTCTAGGTAGTCTCGCGCGATCGCACCTTGAAAACCCCATACTGCAACGTTTCCAAAGGTATAGG # Right flank : TAAAAAAGCGATCGCCTTCTGCTTAGAGGTAAAGCAATACGAGTCCAACCCGACCGCTTGTTGTACAATGTACGCCGGGGATGGGTTAGACTGATTGACTGAAGTTTCATTAGTAACCCGTGTTATCCACTGTTTTGCTTGTGTCCCACGGTAGTCGCGATCGCCGCCCTCAATTAGCTGTAGATAAGTTAGCACAACAGTTGAGCGATCGCCTCAAGGTGACTCAGGGTGGGGATAGTTTAACTGATTCTTTGGTGGGAAGTGCGGTTTTGGAGTTGGGACCGACTCCGCTATCTGCACAAATTCACCAATTCGCTGAGTATAGCCTGAGTTTAGGGATTCATCGAGTCCAAATTCTGCCCTTGTTTCTGTTACCTGGGGTCCATGTGGGAGAAGATATCCCCACGGAGGTGGAGTTAGCCCAAAAATCCCTGGGAACCGAGATAGAAATTCACCTACAACCTTATCTGGGAAGCCAACGCCAGCAGTTGTCTGTACTG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 10713-10520 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABYK01000092.1 Limnospira maxima CS-328 ctg80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 10712 37 100.0 39 ..................................... TCAGAAGAATACAAAACTAAAGTGTGTTTAAATCTTATG 10636 37 100.0 43 ..................................... TGAGCCAACGTCATGCCCCTTTTTAGAAGTTTTACAGTTCTCC 10556 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 3 37 100.0 42 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : ATCTGTAGCCCTCTCCGGCATTG # Right flank : CGTTTCCGCTATTTTTGAGCCAACCAAACCATTGAGCCAACCGGACGATCGCATTTCCCAGACCAGGAAAGCGAAACTGCAGAAATTAGTTAATTTGGAGAGCGATCGCCAGGTATAATTTTCTGTGAGGGAATTAACTCAATCCATGGCACCAAGTTCATTGACACCAGAAACACACCTACCAACTTTCCCCGTTTTGGGATTACCAGTACATCTGGCTGATAATTATAGCCAGTGGCTGTCATCGCGGCTGAGTCAGGGTTTGGGAACTAATGTCATCACCCTCAATGCTGAAATGGCGATCGCCGCCGAATCTAATCAACCCCTAGCCGAATTAATCCGAAACGCCGACCTAGTAATTCCTGACGGTGCGGGGGTGGTGCTTTATTTAAAATTCAAAGGACACCCTATCCAGCGTTGTCCGGGAATTGAATTAGCCGAAACCCTCCTCCATGAGTTTAACCAGCTAATACCCTCTGGATTGGTGTTTTTTTATGGTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 65-1150 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABYK01000125.1 Limnospira maxima CS-328 ctg163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 65 37 100.0 45 ..................................... CAGAGCATTTTTGGTGCTCCGAAAACAAGAATTGTTCTTCCTGTG 147 37 100.0 41 ..................................... ACCTTGTATCGGTTGGCGCCCTTGGTAGGGCAACCTTCCGA 225 37 100.0 40 ..................................... TGACTCACTATCCCTGTCGATTCAGGGTGTTATCAGAACT 302 37 100.0 47 ..................................... TTGTATTATTTTTCATGATCCCGTTCCAAAATCTTCAAAAAAAAGAG 386 37 100.0 44 ..................................... ACCCTACATCGGGCAAGGGGCACGGAGCCACCTCTTCCTTCAGG 467 37 100.0 47 ..................................... AAGTAAGCGATCAAGGGGACTATTTGTACCTGTCGAGGCCCCAAAGA 551 37 100.0 39 ..................................... CCGGTTCAATTGGCTGGCACTCCGTTACTAGGTAATAAG 627 37 100.0 45 ..................................... AGGTATTCCTGGATTGTACGATTTGAAAGGGAAGGTTCTTTATAT 709 37 100.0 49 ..................................... CGAACTTGGTATCAATTTCAGCTTGCTGTTCAGGAGATAAGCTGTCATA 795 37 100.0 48 ..................................... CCATGCAGCAAAGTGCGTAATTGATTCAAAATAATAGCGGTACCGGTA 880 37 100.0 37 ..................................... GCTTTCTAGCAGCAATATCTTCGAGATACGATGAAGG 954 37 100.0 42 ..................................... TCTAACCAAACGGTTTTCACTCGCTTGTCCCCGATTATTTTT 1033 37 100.0 44 ..................................... CCCGGAGGAGTTGGCACCCGCAGACCAGACTGAGGATCTGGTCG 1114 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================= ================== 14 37 100.0 44 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : ATTCCCGTCAGGGGACGGAAACCTTCATGGTTGGGCATGGGTAAAAATATACCCAATCCATATTG # Right flank : CTAAAAAAGCGATCGCCTTCTGCTTAGAGGTAAAGCAATACGAGTCCAACCCGACCGCTTGTTGTACAATGTACGCCGGGGATGGGTTAGACTGATTGACTGAAGTTTCATTAGTAACCCGTGTTATCCACTGTTTTGCTTGTGTCCCACGGTAGTCGCGATCGCCGCCCTCAATTAGCTGTAGATAAGTTAGCACAACAGTTGAGCGATCGCCTCAACGTGACTCAGGGTGGGGATAGTTTAACTGATTCTTTGGTGGGAAGTGCCGTTTTGGAGTTGGGACCGACTCCGCTATCTGCACAAATTCACCAATTCGCTGAGTATAGCCTGAGTTTAGGGATTCATCGAGTCCAAATTCTGCCGTTGTTTCTGTTACCTGGGGTCCATGTGGGAGAAGATATCCCCACGGAGGTGGAGTTAGCCCAAAAATCCCTGGGAACCGAGATAGAAATTTACCTACAACCTTATCTGGGAAGCCAACGCCAGCAGTTGTCTGTACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 3479-5709 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABYK01000086.1 Limnospira maxima CS-328 ctg84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================== ================== 3479 36 100.0 49 .................................... CACATTCCTAATATTTCTACACTTTTTATTCCTGCCTTCTCTAAAGTCC 3564 36 100.0 43 .................................... CAGTTTTCTCAAATTGTTCTTGTATGTTGAATCTTTCTGCGTT C [3585] 3644 36 100.0 45 .................................... CGTTCCGTAGGAACCTGCATAAGAGCGAGTGTCTATTATTTTTAT C [3665] 3726 36 100.0 45 .................................... CACCGCTTTTTGTTGAAGCTGTCCACCAATATTTCAAATCTACGA C [3747] 3808 36 100.0 49 .................................... CCCCTGAGTTTTCGAGAAACTCTTTTAGATATGCGCCGTCTCTTTCGTC C [3829] 3894 36 100.0 47 .................................... CAAAACTCAGCCTTTTCGATTGAAGTGTGGGGTATTTCATTTTCCGG C [3915] 3978 36 100.0 39 .................................... CTCTAAACTTTGATTTTGGTGGTATTTGTTTTGGGTGAC C [3999] 4054 36 100.0 45 .................................... CCGCGTAATATCTGAACCGAAAGTTTCTTTTTCTTTTCATTTGTT C [4075] 4136 36 100.0 45 .................................... CGACACCGTAGTTATTGTAGGGACTGTTTCTGGAGATGATTTAAC C [4157] 4218 36 100.0 45 .................................... CCCGGTCCGAGAATATCGAAGTCCGGGTTCGACTTCGTAGTAAAG C [4239] 4300 36 100.0 45 .................................... CTTGATGATAATACAGCCAAGCATTTCCCACTCTTTTCTCCCTTG C [4321] 4382 36 100.0 45 .................................... CCTGTTGGTTTGTCGGGGATGACCAACAGGAACCGAATGGTCACT 4463 36 100.0 42 .................................... CAACTGAACTGCATAAAGGGAATCTGGATGTCGCTGGGCACC 4541 36 100.0 50 .................................... CAAGCAGGGACTTCAGAAGTTTTTTCTTCAGAAGTTGCAGCGTTTTTGTT 4627 36 100.0 46 .................................... CCAATAATAGATTGCATACCTTCTGCCAAGCTATCCCCTCCACTCT 4709 36 100.0 50 .................................... CTTCTCCAGTAAGTGGCTCCCCAGTCTGGTCGGGGTCTGCGATAGCCTTT 4795 36 100.0 51 .................................... CGCAACGGTTCTGATTTCTCTGAGATTCTCCCGTGTTGAGAATCCTGATAA 4882 36 100.0 41 .................................... CCCAAAATTTCCGTCGGATTGTCCACGGCGGGAATAAACAA 4959 36 100.0 54 .................................... CTTTGAGTCGAAATGGCTGAAACTCCCTACTAGACTAGCTTAGATGCCCCTAAA 5049 36 100.0 42 .................................... CGTTTTGTCTCAAACACGGAGGGAAGATCAAGATAGAAGGCT 5127 36 100.0 41 .................................... CAAATCCGTTATTCCATAGAGAATAACCATAATTTTTCTCC 5204 36 100.0 43 .................................... CCCTGAGGCCTTCTTTTACTACATCTTCAGGAATCTCGCGAGG 5283 36 100.0 40 .................................... CGTGAACTTGCAACGTATCTTCCCGTACCGGGGGTTTAAA 5359 36 100.0 45 .................................... CTGATCGGGCCGTAAGATAACGCGGGGTAAAAAGTGCTAAAGTAC 5440 36 100.0 39 .................................... CAATTGTCATCCATAATTTTGTCCTTGCTTTTTGCCTAC 5515 36 100.0 43 .................................... CCTAAGTTTATAGGCAACCTCCCCTATGTAATTAGAGGGTTTT C [5536] 5595 36 94.4 43 ....................G.........G..... CCGACTAATAGCCCCGACATTAGTGATGAATGACTGCAGCCGT 5674 36 86.1 0 ..G.........A........A.G......G..... | ========== ====== ====== ====== ==================================== ====================================================== ================== 28 36 99.3 45 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAA # Left flank : AGGTGATTAATCCACCATTGTACAGGTGCATTGGATTCAGTTAAACGCGCTACGGACAATCGGGATATTTAATTACCCCTCCGACTTGACTCTGGCTGCTACGGTTTTGCTTAATTGTGGCCTCGCCCCTGTCCCCCGGATATGGTTGGCGAGGTCATTCTCATAATTATTTCCGTTTTTTGGGGCGATCGTGCCTACTTAATCGATGGATTCGTTGCAGGGTAATGGTTTCGGCTTGTGTAAAGTTATATTACAGATTCTCATAACCTCGCGCGACTTCTAATCCTGCCCTAGTTAAAGCAAACTTTAGCCACGCCAAGAAAAGTTTTTGTTTCGGGGGGTTGACAGTCTGGCACTATGGCTGATAATATAAATCCAGCGAAAACAAACGAATTTGCTCCCCGAAAAAAGGGCTGTAAAGTTTTGTTAAGCACCTTCTACGTGCTCTCGCGCGATCGCACCTTGAAAACCGCATACCGTAAGGTTTCCAAAGGTATAGG # Right flank : ACGCCCGGTGGTGTGTGGATGTTGTGAGGGTTGAGGTGGTGTCATGGCGGGGTAATTTCGCAGTTGGGGAGGGGGGAAAAAGACGAGTCTGGGGGATAAAACTTGTTGGGGGTGTAGAAGGGTTAGGGTTGGGTTGAGGCGTGCAAAATCCGATTAATAATGCCACTGGTAGAAGTAGGCATTTCCACGGCAATGAGGACGATTTTACCGTTATAGGCTTGAACCGTGGGGGCCTCCGGTAGGGTGTCAATGGTGTAATCACCACCCTTAACATATATATCAGGTTGTAGCTGTTCAATAATCGCCGTAGCAGTGCTTTCTGGAAAAATGACCACTGCATCTACGGGTTTTAACTGGCTGAGAACTTCGGCTCGCTGTAATTCTGGTATAATAGGACGGGGAGGATATCCCGCCGAGTGGGGTTTAATCAGGCGAACAGAGCGATCGCTATTGAGACCCACTACCAGCGATCGCCCCAAACTTTTGGCTTGGGTCAGGTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 3194-6404 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABYK01000079.1 Limnospira maxima CS-328 ctg38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 3194 37 100.0 46 ..................................... TGGCTAATCGGGCTAAACTTTCTTCTGGAGGAATATCTAGCCAAAT 3277 37 100.0 44 ..................................... TTTCTAATCATGTTGACTAAAAAAGAAATTTCTCAAAACCCCTT 3358 37 100.0 41 ..................................... CAGATTGGGTAGTTGTTCTCGCTGAATTTTTCCCCACTACG 3436 37 100.0 40 ..................................... ACCCAGTAACACTCCCCTACCGTTATCTCGTATGTCAGTA 3513 37 100.0 39 ..................................... TCCACCTCGAGGGTTTCTTTTCACCCCTTTTTTTGTCTC 3589 37 100.0 46 ..................................... TCATTTAATTTTCTTTGCGCGGGGGTGATTTTTTTGCTTTTTGTCC 3672 37 100.0 47 ..................................... AAAGAAAACGAGCACCTCGGTTTCTCCCTGCTGAGTAATCTGAGTAG 3756 37 100.0 41 ..................................... TATTTGTATTGGCTAAGTCCTATGGCTTCTTTAATGGCTTC 3834 37 100.0 44 ..................................... ATGGCTGGTTCGCTGCCCAGCTTCGCCACTTCCTTCACAAACTC 3915 37 100.0 46 ..................................... ACTCCTTTTGAATCTGCAACGTAATTTCTATTGTATGATCCGTTAA 3998 37 100.0 41 ..................................... TATCGCTGTCATCACACCCGCAAACGCGGGTGTGATAATGA 4076 37 100.0 40 ..................................... CATCGTTTTTCTCCGATGAGAATAGGGTGGAAGTTTCTTT 4153 37 100.0 48 ..................................... TCCCTGAAGGACTCTCTCTAATCAACTTAGTTCACGGAGTCAACCCAT 4238 37 100.0 43 ..................................... TGTAGCGTCAACCCCCAACCAATAAAATTTGTTTGTAGTGTGG 4318 37 100.0 41 ..................................... TAGATGATTTTGATAATTGCTGTATCGTCCCTTTAGCCAAA 4396 37 100.0 38 ..................................... CCCCGTTGGGCAAGCCCTTTCATTAAAGCTGGAATAGG 4471 37 100.0 46 ..................................... ACTACTTTCACAAAAGTCGCCCAACGGTTTCCGATTTTCAAATCAA 4554 37 100.0 43 ..................................... CACTAGAACGAAGTATTTTCGCCCTTTACCGGGGAATGGGACC 4634 37 100.0 43 ..................................... CTAATTCCACATCAATCTCTAATCCATACTTTCTCCAGTCAAG 4714 37 100.0 44 ..................................... ATAGCAGGATGCTATCCATCGGGCTTGTTCCCCTAAATGGTCGG 4795 37 100.0 46 ..................................... CAGAGTAGATTACCATTTGGTAATCTATTTGTCTTCTTGTCCAGTG 4878 37 100.0 45 ..................................... TTACCCAGTCACGGTAATACTCGTAGGACTCATATAAACTAAAGA 4960 37 100.0 48 ..................................... GAACTACAATTCCTTAAAGCAGGTGCAGCCGAAGGGGTAACACCTAAG 5045 37 100.0 40 ..................................... CAAGCTTCCCGAATCATGCCCGTCAGCACAGGATGGTCGA 5122 37 100.0 42 ..................................... TGATGGACGTGGTTTCTGCCTCCAGTTTAATATAGTCATCAG 5201 37 100.0 43 ..................................... CTTACAATTCTTGAGTCTGACTCACAAATTGTATACGAAGAAA 5281 37 100.0 41 ..................................... GCCCCCTGGATATGGGTGAGACTTACTTCAGCGTCATCTAA 5359 37 100.0 44 ..................................... CACCCTGGTTTCCGCGATCGCTATTAGCGATAACGGGAAAAGTC 5440 37 100.0 42 ..................................... TAATCCATTAGTCCAAGCGATCGCTTTATTGACCCAAGATTG 5519 37 100.0 42 ..................................... ATACTTTATAAAAGTATGGAATCATTTTATTTCTCCTTTTAA 5598 37 100.0 43 ..................................... TCCTCTGCTTCGCAGAGGCGCAGCGACCTCTTGCAAGCAAGAG 5678 37 100.0 45 ..................................... AGTCGAACCCGGTGGGCACCGCCACATGGGCGTAGTGCCGCTTCA 5760 37 100.0 37 ..................................... TATCCTTGATGGGTTCAGCCGCAAAATCTTACGAATT 5834 37 100.0 40 ..................................... GATAATGGCCGTGATCGCTGCAGCGATTGCTGCAACGATT 5911 37 100.0 43 ..................................... TATGCCTGTTCTACCGCTTGGATAATGTCGGCTCCTACCCAAG 5991 37 100.0 45 ..................................... TGTCTATTTTGGCAGGCATCCAAGGATACCCACTACAAATGTGGG 6073 37 100.0 40 ..................................... TTGGCAATAGAAGGGGCTGAAGGAGCCACCTGAGTTTTTG 6150 37 100.0 47 ..................................... TAACTGTAGTGCTTTTCTGCAATCTGAGAGCGCTCGGTGTCCGCCAT 6234 37 100.0 30 ..................................... GGCGCGATCGCCCTCCATTTTGGCGTCAGT Deletion [6301] 6301 37 94.6 30 .....................AC.............. GGCGCGATCGCCCTCCATTTTGGCGTCAGT Deletion [6368] 6368 37 89.2 0 .........G...........AC.......T...... | ========== ====== ====== ====== ===================================== ================================================ ================== 41 37 99.6 42 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : CCTGGAGGAAAAAATTCTGGAGGACTTATTGAATAAGCGGTGGCTAAAGGTTTTGAATTTAGAAAAGGATAGTCTGCGGGCTTATCCCCTCAATCCCTCCACCAAAGCTCAGGTTAAGGTCTACGGGGGACCGCTTCCCTACGAACCACCAGACTTTCTCATTTTGTAAGGGTTGCGATCGTCTCATTTTTCATCACTTTGGGGCTGAAATGCCTTTGAGCCAATGATTTTCAGCAATGTAAAGTTATATTGCATTTTTTAATAATATGGCGCGACGAGGATACAACAGAAACCTGATATAAACTTGAGCTAAAAAAAGAGAAATTTGTTTTTTGGGGGGTTGACAGTCTCGCACAACTCCTGATAATATAAAAACATCGCAAAACAAACGAATTTACTCGCGCCAAACAGGCCTGTAAAGTTTTGTTAAGCACCTTCTACGTGCTCTCGCGCAAACGCACCTTGAAAACCGCATACTGTAAGGTTTCCAAAGGTATAGG # Right flank : CCGGCGATAAAACCGAGTGGTCAAAAAAGCGCCAATGGTGAAGTCTTGTTAATCAAAGTGTGGGGGGGGTTGGGAAACCGTGTGAGGAGAAGATATTTCCCATCAATTAACCTTCCACTTCCTGATTAGTTGGTTGGGGGGAATTTCCTAACCTCACCTGCTTACCAATGAGACTTAAAAAAGTCGAACCAAAATGCTGAATTTCCAGAAAGTTAGCATAAGCAGGCGCCGGTTTATAAATCCTAAAACTCTTCATAATTCCCAGCGTCGCCGCGCTTTCCAGGGGACCCACAAAACTACTATCGCGGTCTAAAAAATAAGGCTGTTTTACCCAATGTTCCATCTGGTTATTATTCAGGAAATAACAGCCAGCGTGGGGGTTTAAGCTGCGATTAAATTGAATGGGTTGTTCCATCACTTTACCCACCAATTGGGGGCGATCGCGTATATTTTGAAACTTCGCGGTTACATGGGGTAATAAATCCCCATCCACATAGGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 473-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABYK01000066.1 Limnospira maxima CS-328 ctg81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 472 37 100.0 41 ..................................... TCCTTTTACATTGGAATCTCCCAGATTCCAGATGTCTTCTG 394 37 100.0 40 ..................................... GCCCGAAACATCTATATATCAAGAAAGACAAAAACTAATT 317 37 100.0 41 ..................................... TTCTACGATGCATTCCTCGATGGAATTTGTGGGTGTCCAAC 239 37 94.6 43 .....................C............G.. CTGTAGGAGACCACATAATAGCATTGAAAGTGAAGTCCCTTCT 159 37 91.9 43 ..............T.....AC............... AGGAGATAGTCCTCCTGGAGGAGAAGCTGGACTGCTATCTGCA 79 37 91.9 0 .....................CC.............G | A [53] ========== ====== ====== ====== ===================================== =========================================== ================== 6 37 96.4 42 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : TCGTTGATTTGGTGGCTAATCTTGGTGACAGGTTTCCCGACAGCCAACTACACCTCACGCCACCCCTAGACCATAGCCCACACCTGGGCGATTTGATTTGTACTTGGGCGGAATCTTGCCTCTAGGATACCACCTGCCTGCTGCAGTGGGTGGTGATTCTCATAATTCTTTCCCTTTTGAGAGGCGATCGACACTCCCTAATGGCTCTGTTGCCTTGGGGGTAATAGTTGCGGGGTTTGTAAAGTTATATTACAGATTCTCATAACCTCGCGCGAGTTTGAATAGGGCGATCGTTCAAGTAAACTGGAGCCAACAACAGAAAAGTTTTTGTTTTTGGGGGTTGACAGTCTGGCGCTGTCTCTGATAGTATTAATTTACGTGAAAACAAAGGAATTTGCTTCGACAAAAACAGCCTGTAAAGTTTTGTTAAGCACCTTCTAGGTAGTCTCGCGCGATCGCACCTTGAAAACCCCATACTGCAACGTTTCCAAAGGTATAGG # Right flank : GCCTTTTCATCTCTTATTGGTCAAGTCTAATTCAAACCCTTC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 29685-30022 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABYK01000031.1 Limnospira maxima CS-328 ctg11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================= ================== 29685 35 100.0 39 ................................... CATTATCTGCTACTTCTATACTTGGTAAAATACCACCTG 29759 35 100.0 41 ................................... TAGTTTTTTCCTTCCTCCCTCTTATCGCGCCTCCCATCACC 29835 35 100.0 34 ................................... AGTAGAGTCCCATCTAACATAGTAAAGGGGCGAT 29904 35 100.0 49 ................................... ATTAACCTTCTGCCGTCTCCTGGTTGGGGGTAATTTGGGGGGTTACTTT 29988 35 88.6 0 ............T........C...C.......C. | ========== ====== ====== ====== =================================== ================================================= ================== 5 35 97.7 41 CTTTAAACTTCTCTGAAAGTTAAACGTATGGAAAC # Left flank : TTTCTTGATTCATGGAGCAAAGGGAATCTCTAAACAACGGATGGAAAACTTGCACTCTGAGGACTTGGAAAATCCGGGAAATTGGAAGATTGAAAAGACTGTTCGTGTTTCTTGTTTGCACACAGAAATTATACCACAAATGAGTCAAATTTATTGCTGTTTCGTTGAGTTGGTTTCACTTTCTGGCTTTCCAAATGTACAAGATTATCTAGTGGTGAATCAGGAAACGCGCGATCCGATTGAACCCTATTATCTTTACTCGGAAATTAAGGAATGGGTTGGGCAAATTTTGGATCACGATCAATAATCTTGTGGGGGTTGAAGAATCGCTGAAACCCTGATTCTTTCGTTGACCCCCCCGGAATGCTTTCTCTGTCGGAGTTTGAGCGATTATTTATACCCTATTATTGCAAATATGTCTCAATAATTTGGGTGCTTGCTTGACCCCCACAAATTTGAGTGCTAGAGTACAGTCAGGGCAAGGGTTTCAACTCGGTAGC # Right flank : CCCCACCAACCTCCCCCTAAAAGGAGGAAGCCTAATTTTTTTGCTAATTTGAAAGTTCAACCTATAGAGCAAATAACTTTAAAAAAATACCCCCAAATTTGAGGGTATATTGTTAGAACTAAATTCAGTTTCTTTCCATACGTTAGACTTGCTTAGAAGTCAAAGCGTTGCTGTTCTCAAATGGGTGGTAAACCACTTGATATTCAGCTTGAGGAACAAGCTTTTGTAAAATGCGCTGATGATTAACTGCATCATTTTGTGAACGAAAACGACCCACAACCAAACACTGATTATTAGTAACAGATTCTCGTTCTGAGGCGTTTGGCGATCGCACCAAACACCAGGGATGCAATCTCTCAAAAGCTGTCATTGCTCGTTCTCCTTACGCTTTGACCCCACGATAAGCCCAAGAATTTGCACAAAACAGGGCAGGCTACCCTTGACAAAGTTAACTGTTTGTGCAGTTGAACCGCTCCTTGAATTCGGTCGGTAGCTCGTCC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTCTGAAAGTTAAACGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 34647-35581 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABYK01000031.1 Limnospira maxima CS-328 ctg11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================================== ================== 34647 35 100.0 36 ................................... AGTTAGTCTCGTCGTGTGTCTCCTGGTTGAGGATAA 34718 35 100.0 39 ................................... GGTACTGGTTTGGTGAAGAACCGGAAACCCGAAAAAAGG 34792 35 100.0 46 ................................... ATGAAAACTCTAAACTATCCGTTAGAACGAGCCACGTTCATTCCGA 34873 35 100.0 34 ................................... ATTAATAATTCCGGCTGTCCGGAGGCGTACATCT 34942 35 100.0 44 ................................... AGGAAACAAGCGATATTTACCTTCAGGAAAACTTTCATCAACAA 35021 35 100.0 37 ................................... GCTAGTGTCGTCAGAGAGCCAGTTTTAAGCAGGTGCC 35093 35 100.0 34 ................................... AGGTGATAGCCCCCAACAAAAAAGGAGGTGCCAA 35162 35 100.0 47 ................................... AGTTGAAACAGTTGGAGGGATTGAGCGGAAAAGTAAATCCAGTAAAA 35244 35 100.0 38 ................................... AGTCTTCCAGTTTTTTTAGTCTTATTTAGGATGTAGGT 35317 35 100.0 40 ................................... ATTTTAGGACACGATTGAGAACCAAGTAGAGAGACGGAGG 35392 35 100.0 39 ................................... CAGCCGTTAACTGGAGTGTGGTACTTGCACACCAAGAAA 35466 35 100.0 46 ................................... TTAAATTAGCTGCCCCCCTAGCCCCCCAACTTTGGGGAGAAATATA 35547 35 85.7 0 T...C................C...C.......C. | ========== ====== ====== ====== =================================== =============================================== ================== 13 35 98.9 40 CTTTAAACTTCTTTGAAAGTTAAACGTATGGAAAC # Left flank : TGAGGAGTTTCGCGCCCCGGTGGTGGATTCGCTCGTTATCTATCTGGTAAATTCGGGAATTTTTACCCCGGAAGATTTTACCCCAAGTGACGAACGAGGTGGGGTTTATCTTTATTCCGATGCTCTCAAAAAATATCTGAAGCATTGGCAGGATAAGCTTTCTTTGAAAACGACTCATCCTCATACGGGTTACAAGGTTAGCTACTATCGGTGTTTGGAGTTGCAGGTTTGGGAGTATATTTCTTGCTTGATGGGAGAGCGGGAAGTTTATCGGCCTATGAAACTGGAAAAGTGGTAAACTAGAGTTTCCGGAGGGGTTCGACAACTGCTCAAACCTGCATTGTTTCGTTAACCCCCCCGGAAAGCCTTCTCTCTCTGAGTTTGAGGGATTCTGGAGAGTATTTTATTGCAAATATGTCTCAATTATTTTGGTGCTTGCTTGACCCCCCCGGAAATGGAATGTTACACTCCAGTAATAGCAAGGGTTTCAACTCAGCAGT # Right flank : CCCCACCAACCTCCCCCTAAAAGGATGAGGCCTAATTTTTTTGCTGATTTGAAAATTCAACCTATAGAGCAAATAACTAAAAAAAATACCCCCCAAGTAGAGGGTATATTATTAAAATAAATTCAGTTTCTTTCCATACTTGATACCGGCTTAGAAGTCAAAGTGCTGCTATTTTAAAATGGGTTGTAAACCACTTAATATTCAGCTTGAGGAACCAGCTTTTGTAAAAAGTCATGTTTTTCAATTTGAGCTTTTACCGATTGAAAAGTTAATAATGTTCTTCCTTTCTCGCCTTTTTATGACTAACAATATAGACTCCCCAGGGCAGACGAACTCCTGTTAGAGTCGTGAACTTGAACTGAGCGTGTTCCGGGTTAGCAATATCCAAATCTGCCCAACTCAAATTGGTATTTTGTAAGTTCGTCTGTGCTAAATTTGTACCACTGAGATTCGCCCAACTCAAATCCGCATCCCTGAGATTAGCATAACTTAAATTCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTTGAAAGTTAAACGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //