Array 1 6937-8065 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAY01000022.1 Salmonella enterica subsp. enterica serovar Muenchen strain BCW_2738 NODE_22_length_20364_cov_1.43548, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6937 29 100.0 32 ............................. TTGGCAGCGTTAACAATCCAACCCCTGAGAAC 6998 29 100.0 32 ............................. GATGCTAACCACTATTTCATCCGCCTCGACGA 7059 29 100.0 32 ............................. GTGCGCAGGATATTCTCGCGGACTGCGTAGCG 7120 29 100.0 32 ............................. CCTGTGACCTGTTCGATGAAGTTGTCGCGCAG 7181 29 100.0 32 ............................. CAGGCCGCGCAGTGGAAAATGAGCCCGTTTGC 7242 29 100.0 32 ............................. ATTGATCCAATTAACGTAGCTGCAATGTTTGT 7303 29 100.0 32 ............................. GCCGCGCATGACATCGAAAAAATGTGGGAAAA 7364 29 100.0 32 ............................. GCGTCCGTGTGATCACCGGGTGGGTGATGAAC 7425 29 100.0 32 ............................. TTCAGCGAGCCATAAAACCGCAGTTTGTTTGC 7486 29 100.0 32 ............................. TCACTTCAATAAGTCCTGGCGGTAGCTCGGGG 7547 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 7608 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 7670 29 100.0 32 ............................. ATTCTGGCTGTTATCGGCGGCACTCCTGATCA 7731 29 100.0 32 ............................. TGAGCACTGTTATTCGTTATAGCGGGTTTCGG 7792 29 100.0 32 ............................. TTACTGAAACGGATAAAAAATAATCAGGGGGG 7853 29 100.0 32 ............................. GGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT 7914 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 7975 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 8036 29 96.6 0 ............T................ | A [8063] ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //