Array 1 198405-198091 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024892.1 Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 198404 36 100.0 36 .................................... GATGTAGCCTGCGCCTTTATCGGCGGATGACTCCAG 198332 36 100.0 34 .................................... CTTGCCGAACGTGAGGTTCTCACATTCGACCGAG 198262 36 100.0 33 .................................... TCGTTCGCGGGTCTGTCCTTGCACACCGGATAC 198193 36 97.2 32 ............................C....... ACGACATCCTGCGGGGTATAGATCGCGTCACC 198125 35 91.7 0 ..............................-...GA | ========== ====== ====== ====== ==================================== ==================================== ================== 5 36 97.8 34 GTCGACAGTGCTCCATTCGCCTACGGGCACAGAAAC # Left flank : GGCGTCCAGGACCGTTCCTGCAGCGATGAACTGATCGCTCCCAGATGCGCAAGCAGGTCGGCGGCAAAGGCCGACACCTCGACGTTCGGTACCGGTTCCCACGCCAGACGCGACTTCGTGAGGTGCCAGGCGTCGAGGACATTCTGCTGTGCCGCCGCCTCGTTGAGCATCCTTCCCATCGTTGCTCACCCCTTCAGCCCGGGAATAGCGCGGTCCTGAACCACCCTGTCGAGACGACTCGATATCGTTCCCTCACGGCGTGGTTCAAGGACAGCCTGACCCCCGGCTTCCCTACCCGGCGTCTGACCGCAATATGTCGACCGTCGCCCATCGAATGATCTCCGTCGGCAACGCCAGATCGTCCGAGACAGTGCATGCACCTGTTTGCGCAGGTAGAGTGCATATGAGGTGAACCTGAGTGTGGAAGATCGGAAGATCGACCGGGGGTGCACGTCGCAGACCCTCCTTCCCCTGGTCAAGGCCAGGGGAATTGCATTAGG # Right flank : ACTGGTTGATGGCGTGGGCTTGACGTACGTCGTTGGTGGGTCGGCATGACCGGTTCGGGTCCACGGTGATTCTTCGGATGGACGCGGGTGGATTCTGGGCTCTGTGTCGGCTGCTGCGCCGGGGAGCGGAGGTCGTCGGTAGCTCGGCGAACCGGTGTGCTGGGATGGGCGGTTCGTGTGCCCGCGATTCGCAGTCAGACGTTCCGCGGATGTGGTCTGATCTGCTGTGTCGTGTCGGATGCGGTGACAGGGGGGTGTGGTGTCGGGTACTGCGGTCGTGACGGTGGGGTCGAGTCCGGTTCCGGTGGCGTTGTCGGTTCGCGCGGTCGCTCCGTCGCGGGTGGTGTTGGTGTGTTCGGAGCAGACTCGGGTCGAAGCGGGGCGGGTCGAGGATTTGATCGGCCCGTCCGGTGTTCGGGTGGACATCGTGGTGTGCGGTGCCGGTCTCGACTTCGCGGAGACGTATCAACGTCTCTGGGACGGCTTGTCCGATCTCGGTG # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACAGTGCTCCATTCGCCTACGGGCACAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 203217-202905 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024892.1 Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 203216 36 100.0 37 .................................... CTGCCACGCTGATGAGTCCTGATTGCTCGTGACCCAT 203143 36 100.0 31 .................................... GGGTACAGGTCTGCGACCTCACCCCACACAG 203076 36 100.0 32 .................................... ATAGCCTCTCGGATGCCCGCCGGATCCATATG 203008 36 100.0 32 .................................... GCCACTCCAGCTTGATTCCAGCGAGGCCCAAA 202940 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 100.0 33 GTCGACAGCGCTCTACCTGCCTACGGGCACAGAAAC # Left flank : GTCGCGGACCGGAGTGGTGAGCAGAGTGCCCTGTCGGAGCCAGCGCAACACGAGTACCGATCGGACCAACGTGGTCAGGACGACGGGTGCTTCGGACGCGGCCGTCGGCCAGCCAGTATAGGTACTGGCAAGCGGACGACGGACGTCGAGCGCGACAGAACAGGCGATCACGTAGCGCCTCTGGCTCGCCATCGAGCTTCGCAACTCCAGTCCTGGCAGGAGTTCTACACCTCCATGCGAATCCGGCTCCGACACCACTCGGCCAAGATCGACTCGCCAGAAAACTCAAATGTGTGTGCGAGCAAACTCCGCGCACTTTTCAGCGAGTCCCATGGCCGTACACCCCCGAATACCCCACGATGAGTGGGGAGGCGCATGTCGCTGTTTCCGCAGGTAAAAGCGGTGCGACGACCACTCGCTCGTCTCATATTGAGCACGGCGGGGGGTGCGTGAATACCTTTCGCAACAGTGCTGGTCAGGGAGGCAGAAAATGAGGTACC # Right flank : TTGGGTGTGGTGGACTGAACGTTTGTCCAGTATCGACAGTGCTCCGCCGGCCTTCGAGTGCAGATCCTGCGGCGAGGCGGGCGAACGGTGTCCTCGGAACATGCCGGGGTCTTTCCAGTTTGAGGTGGGGCGAGGCCTCAACGGCATTTCCGGTGATGGTGGTTCCTGCCGACCGCGAAGATCCACAGGAGGTACATCCCGATGCTGTAGAGCAGCGACTCGGCTGGATTGGTCAGGGCGTATTCGATCGTCGCGGCGATACCGGCGATCATGCCCTGGGCCAGGACGGTCGGAATGCCGTCCGTGGTGCGGTAGGCCCACCAATACCGTGCGACGAACCACAGGATCGGTGCGACGAACGCGATCCCCACCCCGATGCGTGCGGCAACCAGGTACGACCGAACCGCCGAGGGACGTCGGCCTGTGCCGCTCATCGCGGGAACCTCGGCGGGTGTGGAAGTACCACTTTCCTCCGTTCCGCGTTTTCGGCATGACCCTGG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACAGCGCTCTACCTGCCTACGGGCACAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //