Array 1 958-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPU01000041.1 Methanosarcina mazei strain 3.H.M.1B.1 scaffold88_1_size16887-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 957 37 100.0 36 ..................................... GACATTTACTTTTCACTCTCCTTTTTTAACTGTTTC 884 37 100.0 35 ..................................... ACAAAATAACTTCCCATTTCAGCAGGCGCAATATA 812 37 100.0 34 ..................................... AGGGGACGTTCGACGCTTCAACGAATGCCGGCGC 741 37 100.0 35 ..................................... AGAAGACCGAGGTGAAAATGAATTGAACTCTGAAC 669 37 100.0 36 ..................................... TATTATTTTCAAGAGTGTTCGCCATTTCATAAACTG 596 37 100.0 36 ..................................... ATTGTTGCAGGCTTAAACCCGTCCCGGTTAGCCTGT 523 37 100.0 34 ..................................... ACTTCAAAAACATCGCCCGGAGCTATAAATTTAG 452 37 100.0 36 ..................................... TGATGATCGAGAAGTAATGCTTACTATCCCTGAACA 379 37 100.0 37 ..................................... AAATATCATATGCAGGAGCAGAGTCTTCAAAAACGGT 305 37 100.0 37 ..................................... TCAAGCTGCACCCCAGGTCCTGCACTTTCCCGCGCCG 231 37 100.0 35 ..................................... TTTTAAAAGTCAAATATTCCACTTTTCCAGGATCG 159 37 100.0 36 ..................................... AGTGTAGGGGTATCGAAGAGAACATATACATCTAAG 86 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 13 37 100.0 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CCTTGTGGGGTTCCAATAATCAAAACCTGCCCGGAGATATTCGCGAGCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 8601-15424 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPU01000010.1 Methanosarcina mazei strain 3.H.M.1B.1 scaffold48_1_size27767-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================= ================== 8601 37 100.0 35 ..................................... ATTTCAACTGTTTCTTTTTTGTCTATTTTTTTGAT 8673 37 100.0 37 ..................................... CAAGTTCCCCTGCTATGATAGATGAGTCTGTTCCGGG 8747 37 100.0 34 ..................................... TGCGTTTGATAATAACCTGAACGAAAATCACCGG 8818 37 100.0 34 ..................................... CCATTTTTACACCTGTTATTTTACCAGACTTTTT 8889 37 100.0 34 ..................................... CCATCAGGTCTGATCCTCTGTATGAGTTCTCTTT 8960 37 100.0 34 ..................................... GGACATACAGGCTTTGCTTTCGCTGTCGTGCCGT 9031 37 100.0 35 ..................................... AGTATCTTGTTTTCTAATTCCAACCTCTTATTTTT 9103 37 100.0 37 ..................................... CAAGGTCATATACTCTGTTTTTTAGTTCTAGAATTTC 9177 37 100.0 35 ..................................... CATGGATCTCTCTGTCTTCGTAATCTTTAAGTGGT 9249 37 100.0 33 ..................................... TTATCAAGATGTTTCCAAGAGTAATAAATCCGA 9319 37 100.0 35 ..................................... CAGTCTCGCTCATCTTTAGTTTCCTCCTATTTTAC 9391 37 100.0 37 ..................................... AAAATGTATTTTCCAGCATCAGTAACCATAGCAAGAA 9465 37 100.0 37 ..................................... CTCTCTGAAATTTCTTCGTTTTCCTCTGTCATTCCGA 9539 37 100.0 36 ..................................... GACGGGTTGCTGCTTCCAAAAGTTCGGGAAATTCAA 9612 37 100.0 34 ..................................... TTACTCTGCTTTCTCTATTCGGTTTATATGCAAG 9683 37 100.0 36 ..................................... CACATTAAAATAATGAAATCTGTATTTGCTTTCAAC 9756 37 100.0 34 ..................................... TAATATAAGTCGCCTTGACATAGAAAAATTAAGG 9827 37 100.0 36 ..................................... ATAGACCGCACAAAAGACGACGCACTAGAAAAGCTT 9900 37 100.0 36 ..................................... TGTTAAAGAGGTATGGTTAGAGAAGGGCGTGCCGGA 9973 37 100.0 35 ..................................... GCAGATGGCGAAAAATGTTATTTAGTTGATAAGAA 10045 37 100.0 33 ..................................... CGGACTTAAGGAATCTATTGTTTGGATGGATTA 10115 37 100.0 35 ..................................... CCCTTCTTACCATCGTTCAAGCCTCCTGCTTCTCT 10187 37 100.0 35 ..................................... CACTTGCTAAAAGTGTGTATCCATTCCCTAGATCC 10259 37 100.0 37 ..................................... GACGACTTGAAGAAAGAGCTTGAAGAGCTTAAAGAGG 10333 37 100.0 37 ..................................... TCGACAATATTTGAATCCAGATTTGGATTTAGTTTTT 10407 37 100.0 35 ..................................... ATTTCTCAGCCGGGTGTCCTGCTTCGACAAGTATC 10479 37 100.0 36 ..................................... ATAAGGACGCAAGACCGGACTTAGGCTGTCTTCAGG 10552 37 100.0 38 ..................................... TAATAAGTTAGGTGGTCCGTGTCAGGCATTATAAAGTG 10627 37 100.0 35 ..................................... TATTCCTGATTCGAACAGGAATCATAGCCTAACTT 10699 37 100.0 38 ..................................... TAAGTCGTTTGCGGAAGCAAAACGGGACATTGTGAGAA 10774 37 100.0 35 ..................................... GGTATTCCATATATAGTAATAGTAATAATAGTATT 10846 37 100.0 37 ..................................... CCGTAAAAGTAGCTCCACTTGTAAAACATGTAATTGC 10920 37 100.0 36 ..................................... GGTAAATTGATGCTGGAGCTGCACTTGTACTGAATA 10993 37 100.0 37 ..................................... AAATCAGGTTTTGATCTCTAACCAAAATCTTTTTATT 11067 37 100.0 36 ..................................... ATCAGTCGCACCAGCCAGCCCACAAGTCAACAAAAA 11140 37 100.0 34 ..................................... TGTGAGCGTATAAGGAAGTGGTCAAACCTACAGA 11211 37 100.0 35 ..................................... TGGCCCAGTAACTACATCATCAGCAAACATAATTT 11283 37 100.0 36 ..................................... TTCAGTTCGTCTTTGCCGGGATCTCAAAACTCAAAT 11356 37 100.0 35 ..................................... ACATGAAAGCTATACAAAGCTGATGCCAAAAATAT 11428 37 100.0 34 ..................................... AGGACGTTGCAGGCGCGACGGATAAGGCTGCTAA 11499 37 100.0 36 ..................................... TTATAATCGTAACCCTTGCGCCCGTTCATGATCCAG 11572 37 100.0 38 ..................................... TAACTGTATTCATTTTCAAGGAACCGCTTCAGTTCCGG 11647 37 100.0 34 ..................................... AGGAGGAGGATACATATCTCAGTTGCTCTATCAA 11718 37 100.0 33 ..................................... TTCCAATGAAATTGTGGTATCCCATTCCTAAGC 11788 37 100.0 36 ..................................... CGCATTTTGTATTCCTCCCATAGCGTGCAGTATTAT 11861 37 100.0 36 ..................................... CATCTAATTTAGGATCAGACCAACGTATCAAACCGC 11934 37 100.0 35 ..................................... ATAAAACAGTTGATGCATACGCTGTGCTTTGTGAA 12006 37 100.0 37 ..................................... TCAAGTCCATCAAATTCATTTGATCTGCATTCGTGTC 12080 37 100.0 34 ..................................... TGAACCGCAATTCCGGCTCTTCTAGTGACTCCGG 12151 37 100.0 35 ..................................... AAGATATTATCTCTTATCTCCTCTTGCATTTCTGT 12223 37 100.0 37 ..................................... TGAAACATACTCTCATCGGGTAGCTGCAAGAGTCCCT 12297 37 100.0 34 ..................................... TGAACCGCAATTCCGGCTCTTCTAGTGACTCCGG 12368 37 100.0 35 ..................................... TGATAGAATATGTACGCATATCCAGCCAATGCCGC 12440 37 100.0 37 ..................................... TACTCACATTAACAATATCGTCCAACCTTTCGACGGC 12514 37 100.0 38 ..................................... ATGACAACGTTAAACCCTCCCAACCAATATCAATAGAA 12589 37 100.0 37 ..................................... ACCGCGACAGTCGCCTGATCCGCGTCTCCCTTCACCC 12663 37 100.0 32 ..................................... ACGAACTGCCAGCCGTAGAATCAGCAACTTAT 12732 37 100.0 38 ..................................... CCTTTTTATCGAGCGAAGTAACTTCAACTGAAAAAAAA 12807 37 100.0 37 ..................................... CCATGTGGTGAAGTCCGTAGCTGGCGTTTGTTGAATC 12881 37 100.0 34 ..................................... GCAGCTTCAGGAGACAGTCTGACAGTAACAGTTT 12952 37 100.0 36 ..................................... TACTCTTCATAGAAGTCTTTCAGGCTTTCAATATCG 13025 37 100.0 35 ..................................... AAAAAAAGTCAAGTAGATATAAAAGGGAAAATCAA 13097 37 100.0 35 ..................................... ATAAGGTCACGTCTATTTATGAACTTTTGAGAACA 13169 37 100.0 37 ..................................... AGAGCTTCACAAGCGCAATCTCTAGCTCCCTGAACAA 13243 37 100.0 36 ..................................... GGATGACTCTCGATTACATAGACGAAAATCCTGAAT 13316 37 100.0 35 ..................................... CTGAAACTCTTCCTGGAGATGGGACTGATACAGAC 13388 37 100.0 36 ..................................... ACTTTAGGTTGAGCCATTTGCTGAACACTAAGATCT 13461 37 100.0 37 ..................................... AGATATATCTGGCTGTCGTAAACACGTTCCGGTTTTT 13535 37 100.0 35 ..................................... TGATTCTTGGGGGCCGGCTTTCTGGCTGGTTGGAA 13607 37 97.3 36 .....C............................... TCCATCCTGTTTTCAAACTGCTCTACAATAAAAGCA 13680 37 100.0 35 ..................................... CTGCACAACTAATGTACTAATTTGTACTATGAAAT 13752 37 100.0 38 ..................................... CATTGCAGACTGATGGTTATGTCTGAGCGATAATTATA 13827 37 100.0 37 ..................................... TTTGTACATCCTGATATTTTTGACACATCTGTTCTAC 13901 37 100.0 35 ..................................... ATTATCATCAGTGTACTTTCAATGACACTGATTCT 13973 37 100.0 35 ..................................... AAGTAGTCTATGAAGATAAGGATTTAACACAATTC 14045 37 100.0 34 ..................................... ACATAACCTAACATAAGTTATATATACTATTAGG 14116 37 100.0 35 ..................................... TTAATATCTGCATCATACCAGGAATAACGGTTATA 14188 37 100.0 35 ..................................... AAATTGCATCGGCTGAGAATGTGTTAGAATACCGG 14260 37 97.3 33 ...........G......................... TAAATTAAAATTAGTAAATCCTTATACAGATGA 14330 37 100.0 35 ..................................... GATTTTCTGCTATACACATCTGTTCATAGTTGTTC 14402 37 97.3 37 .....C............................... TGTATGACTTCGTGATTGCAAACAGCCCATTGCTGAT 14476 37 97.3 35 .....A............................... ATCCTCCTGGTATGGGTAGCTGGATTTTTCTTTTT 14548 37 97.3 35 .....A............................... TATTTTCCTTTCAAATCATCAATTTCAGATTCAAA 14620 37 97.3 35 .....A............................... CCTGATACTGCTACTGGTCTCTGTTGATAGAGTGA 14692 37 97.3 36 .....A............................... AACGCAGTGGTGCAGGCTCTTATAGAGGTCGGAAGT 14765 37 97.3 37 .....A............................... AAAGCGGTTCTGGATCGTCTCAAAGTTCTGACGGGGT 14839 37 97.3 38 .....A............................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 14914 37 97.3 38 .....A............................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 14989 37 97.3 34 .....A............................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 15060 37 91.9 71 .....A.............................GT CGAGAAGTAGCTTCCACTAAAACAAGGATTGAAACCTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 15168 37 81.1 35 TG...A...T.GCT....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT A [15173] 15241 37 83.8 34 .G...A...T.GCT....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT A [15248] 15313 37 81.1 36 GG...A...T.GCT....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC A [15318] 15387 37 78.4 0 TG...A...T.GCT......................G | A [15392] ========== ====== ====== ====== ===================================== ======================================================================= ================== 94 37 98.8 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : GTTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAAAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-38] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 12069-6240 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPU01000048.1 Methanosarcina mazei strain 3.H.M.1B.1 scaffold107_1_size12338-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 12068 37 100.0 37 ..................................... CTTGTGGGGTTCCAATAATCAAAACCTGCCCGGAGAT 11994 37 100.0 34 ..................................... GGAAGTCCTCTTTTGGGAATTGCTTTTTGAATGC 11923 37 100.0 38 ..................................... AAATGTCTTCGACTTTTTTTAATTGGTCTGCAGATTCA 11848 37 100.0 37 ..................................... GAAGAGGGTATCCGGTGATTAGTACATCATGGGCTTT 11774 37 100.0 34 ..................................... CAAACTTTGTTAAGAGAGGGCTTACCCGTTCAAA 11703 37 100.0 35 ..................................... CGAATGGCTCTCTCTCTACCAACAAAGACCAAGTG 11631 37 100.0 35 ..................................... ACCATCCGTTACATCTCTTTGGTAATGTGAATTCT 11559 37 100.0 35 ..................................... TTTGACAATAGTACAATTTTTGAACCTGGTGTACC 11487 37 100.0 37 ..................................... ACTGTGCCAGAAATGAGAACATCGAGACAATTATGCC 11413 37 100.0 35 ..................................... TGTCAATAATTTATGCGCGGAGAAAAAACGGGGTG 11341 37 100.0 35 ..................................... TTCACTTTCCTTTTTCTTTACATAAATTTCAAACT 11269 37 100.0 37 ..................................... TGTTTTCAACATAATGAAAAACTTGGAGCCATCTGTA 11195 37 100.0 34 ..................................... TGAATACGAATTATGAAAGATTAAATCCAGATGG 11124 37 100.0 37 ..................................... TAAATGTCTGTAAAACCATATAGTATAATGTCAGTGG 11050 37 100.0 35 ..................................... TCACATATTCGAGTTTTGTAAGTTCACTAATTACA 10978 37 100.0 35 ..................................... AGGGTTTTAGAGGTCATTTTCACACCCCGAAGAAA 10906 37 100.0 34 ..................................... ACCGTGTCAATCGCTTACGGTTTTAAACAGCAAA 10835 37 100.0 36 ..................................... CCATGTGTGCAGCTCCGGGGTCTATATTCTATTCAC 10762 37 100.0 34 ..................................... TCTTGAGCGAGGGCGTTTCCAACGTCCACCTGTT 10691 37 100.0 36 ..................................... CAGGAGATGCTACAGCAGAAATTAAACTCGATGATT 10618 37 100.0 36 ..................................... TAGGTAATCCCGGCATGAAGCCCACACTCTGAAATA 10545 37 100.0 34 ..................................... CTGACCATATGTTTGCTCATAATGGGAGTTCGGG 10474 37 100.0 36 ..................................... GTGGATATAGAGTCTGAAAAATAATCATGTTGCTGA 10401 37 100.0 36 ..................................... AAGTCCTCTGTTGTTCTTATATGCTCCCGCGAAAGT 10328 37 100.0 35 ..................................... TGGTTGACGTATGCGGTTCTACCAGGAACATAATA 10256 37 100.0 34 ..................................... ATTAATCCCCCCTTCTCCCTTCAGCTTGAACAGA 10185 37 100.0 35 ..................................... TTTCGGCATCTTTGATACTCATCTCAAGAAGAACA 10113 37 100.0 37 ..................................... TATACATCATCAAATAATTAACAGTGATAAAAACATT 10039 37 100.0 36 ..................................... TGTAATTGTCATGGATCAGGACATTATCACAATTAT 9966 37 100.0 36 ..................................... AGAATTCGATTCAGGACAACATGGTATAATATCGAA 9893 37 100.0 36 ..................................... TCATTAGCCTTGTCAAGCTCCCATTTAAAACGGAGG 9820 37 100.0 37 ..................................... TTCGGATGATGCAAATTTTACAGACGATACCATCGCG 9746 37 100.0 35 ..................................... TAGATTTCTAGGGATCTATCGAAGTCTTCAGTATT 9674 37 100.0 36 ..................................... AAGAGCTCATTGATTCAAGTATAAGGCTGTGGGACT 9601 37 100.0 36 ..................................... TTTTTGGTATGTCCTGGAGCTGCCAAAATAACACAG 9528 37 100.0 36 ..................................... ATACAGGTTGACTGCCCGGAGTTCAAAACGCTTGAG 9455 37 100.0 35 ..................................... AGCAAAAAGTAAAATCAGGCACTATAAGCATAAAT 9383 37 100.0 36 ..................................... TAGGATCATAAATTATTATTTTCCCCGCTGCATCTG 9310 37 100.0 35 ..................................... TAACAATTTGATTACAGGTTGTGGATGGGGAAACA 9238 37 100.0 37 ..................................... TTGGGTTGGCGGGATCATCTCAAGCGGGTACAATAAT 9164 37 100.0 36 ..................................... AAATTCCTTCTGAAGAATTGAACGGGGCTTCAGTTG 9091 37 100.0 35 ..................................... TTTCCTGGTTTCAGCCATTCGGGCAATTAGATTAA 9019 37 100.0 35 ..................................... ATTCCTTATTTTCCTCTTAATTTCTCCTCTCACTT 8947 37 100.0 34 ..................................... ACATATTTTAAAGGGAAAAAAGAAGATAAGTAAA 8876 37 100.0 37 ..................................... GAAGAGGGTATCCGGTGATTAGTACATCATGGGCTTT 8802 37 100.0 37 ..................................... GAAGTCGTCTTTTCACATCGTAAAGTATTGCTAGTTC 8728 37 100.0 36 ..................................... GTCCCAGACAGGAATAATAAACCCACTCTCGCACAA 8655 37 100.0 34 ..................................... CTCTCGAAGAACCTTTTTTTTGTTTTCCCATCGG 8584 37 100.0 38 ..................................... TTCGTTATCTTCCGGCTAATTATGCCTCTCACGTCCAA 8509 37 100.0 35 ..................................... TTCCCCGCTCTATCTCATCTAGAGCTACCTGGACG 8437 37 100.0 37 ..................................... TACATGGTATTAATATGGAACCAAAAATCCCCCCACT 8363 37 100.0 35 ..................................... TCAGGAAGAGGGTTTTACTCATGCTCCTGTGATTT 8291 37 100.0 34 ..................................... GAATTCAGAAGAGGATACATTGCCATCATGGCAA 8220 37 100.0 36 ..................................... TGATGATAGAGAATACGAAATCGAGAGTTTCAAACG 8147 37 100.0 35 ..................................... TACTGATGACTTTGATGATATTGCCGACTCTACTA 8075 37 100.0 34 ..................................... TCATTAAATGCTTTTCAAGACTGGTATTATCAGG 8004 37 100.0 36 ..................................... TATATGATTAGTGTATAGTAAGAGTATTGAAAAGCG 7931 37 100.0 37 ..................................... ATACAAGCTAAAGTATCTAATTCTACCTCTACTACAC 7857 37 100.0 35 ..................................... GTTGCAGGGTGGGGAGATGGGACACAGCTTAATGA 7785 37 100.0 34 ..................................... TTCCTAGTCTTAGATCGGCATACCTGAGGGCCTT 7714 37 100.0 33 ..................................... ATCAATCGCGGAATCCCTTAAAATTCTGGCAGC 7644 37 100.0 35 ..................................... TCTGCTGGGCCGGGGTTCAAAATAATCTCATCAAG 7572 37 100.0 35 ..................................... AATATTCTGAAAGGTTGCAGGCTGAAGACAGATGT 7500 37 100.0 34 ..................................... CAACAATTGGGTTACTATTTTGTGTGTTGGTGGA 7429 37 100.0 35 ..................................... TCCTGGGGCTTCTTATGGCCTCTGTGGTCATGTTA 7357 37 100.0 35 ..................................... CTAAAATAGTAATGATAGTTTCATATGTATATATT 7285 37 100.0 36 ..................................... CATGTTTGAAGGACGCAACAGCTATGTTACGCCTGC 7212 37 100.0 37 ..................................... GTATCTACCCCTTCTCTATCCCATTTGTGTGGTGCCT 7138 37 100.0 34 ..................................... TTAACCTCAAAAACACCTAAAATCTCACAAGCTG 7067 37 100.0 37 ..................................... CTTAGGGATATGTTTAGCTCATATATAATGTATATGA 6993 37 100.0 37 ..................................... ATTTGCAATTGTATATAGTACAAAGTTATACATTGAA 6919 37 100.0 34 ..................................... TACTTTATATAGCTTTCTGCGTCTGATTCAGAGA 6848 37 100.0 31 ..................................... TGTCACAATTGTAGTGATATTAATAGCCCGT 6780 37 100.0 34 ..................................... TCATCAGAAAGCCCGCGTGAATACTTCATTTTCT 6709 37 100.0 34 ..................................... TTGCAGGTTTCACCGGTTATGTCACATGTTACAG 6638 37 100.0 35 ..................................... CGGTTCAGGACTCGGTAGAGCACTATTCCCGAAAG 6566 37 97.3 35 ..................C.................. TCTGAGGAGACCACTAAAGCCAGTCGGACCCACTG 6494 37 97.3 36 ..................C.................. AATGTATACGTCCTATATTAACAGGTATAAAAACGG 6421 37 97.3 36 ..................C.................. ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 6348 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 6276 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ====================================== ================== 81 37 99.8 35 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : ATCTCCACGTAAGGAGTCGTCGGCAGCGTCAGATGTGTATAAGAGACAGGTGTAGGGGTATCGAAGAGAACATATACATCTAA # Right flank : TTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATGCAAGTGGACCTATTACAATTGGTGAGGCAATTAAAGAAATACAAGATCACGATTCTGACATTTCTGAAACT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //