Array 1 1990202-1991294 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP044221.1 Streptococcus mutans strain NCH105 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
   1990202	    36	 100.0	    30	....................................	GTCGGCCATAAACAGTATCTAATGCATATA 	
   1990268	    36	 100.0	    30	....................................	ATCAACGCTTGCAAAAGTTTCTTGCTGCAT 	
   1990334	    36	 100.0	    30	....................................	CAGCGTATGATTTTGATTTTAGCTAACTGC 	
   1990400	    36	 100.0	    30	....................................	GTGTCTGATAACAACAACCCCGCTTTCAAA 	
   1990466	    36	 100.0	    30	....................................	TCCTGCTTATGTAGTCGAAGACCGTTTGGT 	
   1990532	    36	 100.0	    30	....................................	AAGTGATATTAAAAAAGAATTAGAAGGATT 	
   1990598	    36	 100.0	    31	....................................	CAAGCCTTCATCATCCGCTCCCATGGATAGA	
   1990665	    36	 100.0	    30	....................................	GTGTTTTCTTAAGCGGAGTCAAGAAGTCGA 	
   1990731	    36	 100.0	    30	....................................	CTATATATTACAGTTATAGACCATTTACGC 	
   1990797	    36	 100.0	    30	....................................	CATCTTGATAAATCGTTCTTTGAAAACGGT 	
   1990863	    36	 100.0	    30	....................................	TGTCTTATCGGTATTTTCTTGAATTTCTCT 	
   1990929	    36	 100.0	    30	....................................	CAGACCGTGTCAACTGCGAACAGTTGCCGT 	
   1990995	    36	 100.0	    30	....................................	AAACACCTGAATCAGAAGATGCCGAATAAT 	
   1991061	    36	 100.0	    30	....................................	GGAACAGTTTACGGCTATTTCAAGCGCGGT 	
   1991127	    36	 100.0	    30	....................................	GCAGCGCCCCATTGATTACCATTTCCTAGA 	
   1991193	    36	 100.0	    30	....................................	ACTAGCAACACAGCACCTTTCAGCGCAAGT 	
   1991259	    35	  75.0	     0	..........CA.......A.TG..-T.A.T.....	|                              	A [1991275]
==========	======	======	======	====================================	===============================	==================
        17	    36	  98.5	    30	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	                               	       

# Left flank :   AGGAAGAGGAAGGATATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGCGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAAGCTTTGGAAAGGAAACTACAATTATAAAACAAGAAAAGCGCTAGAAAGATTGATTTCTAGCGCTTTTTTAGGTATAATATAATTAATTAAAATCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATAAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG
# Right flank :  CGCATTATGCGAAAGAGTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTGTTGACGTCCTAAGGTTTGATACAGATCTTTAGCTTTTATCACATTGTCCCAATGAATAAT

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-10] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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