Array 1 2403-2796 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814358.1 Rothia sp. HMSC071C12 Scaffold34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2403 28 78.6 33 .C........TA.GC.........G... GACAGCCTTCAATGAAAGCCCCGCCGCCCGCAA 2464 28 78.6 33 .C........TA.GC.........G... GGTGCGTGAAAATCATGTTAAACATGCAGAAGA 2525 27 89.3 33 A...........-............A.. GACCGGTACGCAGGGTTTTATCCAGTGTGATGA T [2539] 2586 28 100.0 33 ............................ GCGGTTATCCTGTGCGACAACGCGCTTAGCCGC 2647 28 92.9 33 ............CG.............. GTACTGCTCGGATTGGACGCAGGTACGTACTCC 2708 28 100.0 33 ............................ GCCCTGAGTGCCAGTTGACTGGCCATCAAAATA 2769 28 85.7 0 .......................ACAA. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 89.3 33 GTGTTCCCCGCGTCAGCGGGGATGAGCC # Left flank : GGCTTAATCGGTCCATTCTGGACGCCGCTTTTAGTACGCTGCGCCGTCAGCTGGAATACAAGGCCAGCTGGTACGGCTCACAGGTACGAATTATCGACCGCTTCTTTGCATCCTCTCAGACGTGTAGCGCCTGCGGAGCACGAGCGAAAACCAAGCTCGGACTCCACGTGCGTGTCTTTGAGTGCGCAGCCTGTGGTGTGCGGATTGATCGTGACGTGAATGCGGCACGTAATATCCGTGCAGAGGCTGTGCGGATGCATGAGGCGCAACAACTCGCCCCCGGCACGGGGGAGAGTCTAAACGGACGCGGAGTTGCTGACTCTGATGCCGCTGTTTCGGTGGTGTTGGGGGATGTGGCGTTGGATGTGTCAAGGCCAGCCGCCACGGGCGGCGGGTCACCGTAGACGAGTAATCGTCTACTCATCCCCCTTATATATGTATACACGTGGAAACTGAATAGTTTTTAGGCTTCTGCTAGGCATTATGCCTTGTGGTTAAGT # Right flank : CGGAGTGCACCCCCCATAGGGGGGTGCACTCCGTTATTTGTTTAACCGCAGGACAACCTAGCCATCCCCGGCACTCGGAGGATACCCCCTAGCGGCCGCCCAACAGCGACATAAAGCGGCCCAAATGATTCTCCAACCGCTGCTTCACACGCTTAGTCTTAGACACCGCGCCCTCACTACTCGAATCGCCACCAAAAAGCGGCATCCTAGTTTTGATGAGGGAAGTGAGCTTACCAGGAATCGTACGGCGGCCTTCCCTCAGCGCACGATTAACCACGCGCTGAGTCTCCTCAGGATCCAGGTTTTCATCCCGCACAATGACGTTTTCTTCCTCGACGCGGCGTTCAGTCACGTACCGGTGGAAGCGCTCGTAGACGTCTCCGGGGTTCGGGGTGTTCCTATACTCCTTGGAGAAATCCGTGATGATGTCAGCGCTAGCGCGTAGTTCGCTGCTACTGTTGACGGCACGTTCAATGTCTTCGGTGGCGTCGCCGTTAGAG # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATGAGCC # Alternate repeat : GCGTTCCCCGTATGCGCGGGGATGGGCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTCAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77621-77104 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814375.1 Rothia sp. HMSC071C12 Scaffold150, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 77620 29 100.0 32 ............................. CCTGTAGGGTCTAGAATCGCCTCGAAATCGCC 77559 29 100.0 32 ............................. CCCACGCTAAAAATGCTGGTGGTCATCACCCG 77498 29 100.0 32 ............................. TGAATCAGTCCCGTACGCAGTGCGTAGGCGTT 77437 29 89.7 32 ..T..................G......T AAAGGCACCCTGTAATCCCCCTCAAAACTCAC 77376 29 86.2 32 .C......T................A..G GTCCGTAGCTTCGGCCAGAATCCACCAGCATA 77315 29 100.0 32 ............................. CCAAACCGAAAGGAACCCGCAAATGCTGGCAT 77254 29 93.1 32 .C...........A............... GCGCGGCGCTGGAGGCTCACACAGCTCATTCT 77193 29 96.6 32 ..T.......................... ACTCTCAAGCAGAGCCAGGTCAGCAGACCGCA 77132 29 96.6 0 ..T.......................... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.8 32 GTGTTCCCCGTATGCGCGGGGATGAGCCC # Left flank : GAAGGCCGGGCTTAATCGGTCCATTCTGGATGCCGCTTTTAGTACGCTGCGCCGTCAGCTGGAGTATAAGGCCAGCTGGTACGGCTCGCAGGTACAGATTATTGACCGTTTCTTTGCATCCTCTCAGACGTGTAGCGCTTGCGGAGCACGAGTGAAAACCAAGCTCGGACTCCACGTGCGTGTCTTTGAGTGCGCAGCCTGTGGTGTGCGGATTGATCGTGACGTGAATGCGGCACGTAATATTCGTGCGGAGGCTGTGCGGATGTGTGAGGCGCAACTCGCCCCCGGCACGGGGGAGAGTCTAAACGGACGCGGAGTTGCTGACTCTAATGTTGCCGGTTCGGTGGTGTTGGGGGATGCGGCGTTGGATGCGTCAAGGCCAGCCGCCACGGGCGGCGGGTCACCGTAGACGAGTAATCGTCTACTCATCCCCTTATATACGTGTGGAAACTGAATAATTTTTTTGGTCTTTGGCTGGGTATTGCGACTTGTGGCTGAGT # Right flank : CCTCGCCTCCTGCCCCCTGTAAAAACCCCCGTTAAAAACACGGTCGGGGCCGTCTCGCACGCAGGCTCGAAAAGTGCGAGAATGGAACGAAAAGAAAACTACGAAAGAGATACTTTCATGCTTATTCTCGTTGTGAACGCCGGTTCTTCCTCCCTGAAGTACCAGGTGCGTGACACCTCCCTGCCCGAGGCAGAGCAGATGCTGACCTCCGGCCTCGTCGAAAACATCGGCACCGACGTGCCCAACCACGAAGTCGCATTCGACATCATGTCCGAGAAGCTTGAGCCCGTCCTGGCAGGCCGTGAGCTGCAGGCAGTCGGCCACCGCGTGGTGCAGGGTGCAGAGAAGTTCACCCACCCCGCCCTGCTCACCGAGGAAGTTGTCCAGCAGATCGACGACCTCTCCCCGCTGGCACCGCTGCACAACCCCGCACACGCTCAGGGCATGCGCGCAGCAATGCACAAGTGGCCCTCCCTGCCGCAGGTTGCTATCTTCGACAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 157589-157072 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814378.1 Rothia sp. HMSC071C12 Scaffold193, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 157588 29 89.7 32 ..A......G..T................ GGCGGCTGGGTTGTTGCTGTGAACGCGGCGAA 157527 29 100.0 32 ............................. AGTGGTCGAGTGTCACTACGGCTTTTGGCAAC 157466 29 100.0 32 ............................. GTGAAGCTCATCAACGGCAACCACGAGTCACA 157405 29 89.7 32 .........G................T.T AGAGAAAAACATAAAAGTGGGGCGGCAATCAG 157344 29 86.2 32 ...C.....G.A..G.............. ACGACGCCCGCATCCGCGAGCTCAACGCCGAC 157283 29 93.1 32 ...C.....G................... GAGCAGAAGCAGGGCGCATATGGCGTGACCTT 157222 29 96.6 32 .........G................... GACTGGGAGCAGGACGTGGGGTGGGCTTCTAA 157161 29 86.2 32 ........TG..T...............T ACGCTGAGTGGTGTGCAACAGCTGACGGTTCA 157100 29 89.7 0 ........TG..T................ | ========== ====== ====== ====== ============================= ================================ ================== 9 29 92.4 32 GTGTTCCCCACGCGAGCGGGGATGAGCCC # Left flank : GTCTGGTCGTTTGGGCTGGCAGGCATTATAGTCGTGACTAATACTGTCCAGATGGTTGGCTACTTATTGACTGCAAGAATATAAAAACCCCGGTGCCACCGCCCAAAAACAGGCGTGGGAAAAGGCACCGGGGACCCCCACCAAACGAGGGGGACAGAAGGGCGTGAAAATCATTAACACGCAGAAGAAAGGATAACAGCAATGGCAAAGAAAGAGGAACACACAGAGTTCACCGTGTATCTGTCCTCTAAAGAGGTTGCGGCAATGGCTGGAGTGGAGGTTAAGACCGTGAATAATGCCCGTCAGAAGGGCGACCTGCACCCCGCCTCACGGACTGGCAGCACCTGGGGTTATTTTGAATCCGAGGTGCGCCGCTGGATGGATTGGCGCGAGAAGAACCCGCCGAAATCCCGAGTATGGGGCTGGAATAACAGCGGCACCCCGCGTCCGCACGGTGTTGAGGTCAAAGGAAAAGAAGGATAAATGATCGGGCTTTTCTT # Right flank : TATATCAAGGGCAATATTGAAAGGCTCTCAACGTATTCCCCGCACTCGCGGGGCACAGGTAAAGCCCCTCGGCCCGCAGTAGTAAGCTACAGGTCGAGGGGCCTCCTCATGCATTAGCGTTAGCTGGTAGAAAGGTCAGCGCCCGAAAACCCGGGAACCGCCCCCTACGCCACCGCCACGGTACCCTTGGCTGCGGTGCCGCTTCGGGTCCACAGCAGGAGCGCTGCCACGCTGTTGATGATGTAGAAGATGTACTTGCCGACGTTCGCGAAGTTGCCCTGGGTCAGCGCCTTGATGCACTGCACGGTGTTGTACAGGAACCAGAATTGCCACTGCATCGTGAACTTGAGCGCGTTCAGAATGTTTGCTGACAGGGAGAGACCGAACACTACGGTCGTGATCCAGAACAGGAACGAGGTCTTGCCGTCGTAACCGACATAGTTCGCAATCAGGGAGAACGCGAACGAACCGGCCACAATGCCGCTAATAATCAGCTGCCC # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCGAGCGGGGATGAGCCC # Alternate repeat : GTGTTCCCTGCGTGAGCGGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163290-158195 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV814378.1 Rothia sp. HMSC071C12 Scaffold193, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 163289 29 100.0 32 ............................. GGCAGTTTACTAACGTTACGAATGTTGAAGAG 163228 29 100.0 32 ............................. ACCCCCCATGAAAGGATATGGTCATGTCGATC 163167 29 100.0 32 ............................. CGAACCGAAGAAGATTAGCCCGTGGACGCACC 163106 29 100.0 32 ............................. CGCCGCCGCCGCCTGCTGCGCTCGCCACCTTC 163045 29 100.0 32 ............................. GGAACCATGCAGGCGCGAAAGATGGTGTTCAC 162984 29 100.0 32 ............................. GAGACTATCACCATTGATACTACGGTCTTCGA 162923 29 100.0 32 ............................. CGGGCGCGTTCTCGACCTATGAGGTGCTCCGC 162862 29 100.0 32 ............................. GAGGCCGTCGAGTTCTGCCGCGAAATCTGGAA 162801 29 100.0 32 ............................. CGAACGGTCATTCTAAAGTTCTTGGAGCGGTG 162740 29 100.0 32 ............................. GAATAACCGTTCACCTGCACGCCGTCCACAAA 162679 29 100.0 32 ............................. GCCAGGGGCAGGGTGCCCACCAGGATGAGTGC 162618 29 100.0 32 ............................. TTAGGGGGAATATCCGCTAGAAGCATTTCCCA 162557 29 100.0 32 ............................. GATGTGCTGCGCGCTAGCGACCGTGAGCTAGG 162496 29 100.0 32 ............................. TTCGGGCATTGAAGACAACACTGTTTCCAAGC 162435 29 100.0 32 ............................. GTTGCCTACGGTAAGGGCCGGTCAGAGCGTCG 162374 29 100.0 32 ............................. GGTTGCACGCCCTGGACAATGCGCGATACAAT 162313 29 100.0 32 ............................. GGGTAGCTTCTCGGCGGCTGACCCCGGCCCGA 162252 29 100.0 32 ............................. GCCAGAATCGACAGCAGAACCAGCGCGCACGA 162191 29 100.0 32 ............................. TGTCAGAGCAGTTCTACAACTACTTGGTCAAG 162130 29 100.0 32 ............................. ATTCCGGCCATAAAAAGACATACTGGTTCATC 162069 29 100.0 32 ............................. AGCATCATTCACATTGTCCCTTCGGATAAGGA 162008 29 100.0 32 ............................. CGGGGTGAACAGAGGTGCGTCGTCCTCGGTTT 161947 29 100.0 32 ............................. GTGCGGGAGTCGAGGTGACGCTGATGCCATGC 161886 29 100.0 32 ............................. AGCGATAGCAGCCATCATATCCTCAACCCACA 161825 29 100.0 32 ............................. CCGGGTGTGGGTTGGGGCCCTCATCATGTGCT 161764 29 100.0 32 ............................. GCGGCGTCTCCACACTAGGCCCTAAGCGTAGC 161703 29 100.0 32 ............................. GTGCAGTGGATGCCTGGCATTGTGGAGGCTCA 161642 29 100.0 32 ............................. GAGCTTCTTTCACAGGCGACTGTGAAGATGAA 161581 29 100.0 32 ............................. GCTGCTGGGTAAAAAAGGCCATGCCCCGGCAA 161520 29 100.0 32 ............................. CGGACTTCTCGGTTACCTGAGAATCACCGAAA 161459 29 100.0 32 ............................. CGGAAAAACTTCACCTAGCATCATGGCAAAAA 161398 29 100.0 32 ............................. GGTTTTCACGGCGGGCACAAGCGTATTATTAA 161337 29 100.0 32 ............................. GACGCGCTTTCCGTAAGTGCGTTTAGAGCCTT 161276 29 100.0 32 ............................. GTTTAGATTCGTCGCGATCTTATCCCGATAAG 161215 29 100.0 32 ............................. AAACCAGCGATACCAGCAATAAGGTTCTTCGC 161154 29 100.0 32 ............................. AGCGAGTCCGCTGTTACGTTCACCCACTGGCA 161093 29 100.0 32 ............................. TTTTCGCCGGTGCCCGGGTGGTTTGCCAGGTA 161032 29 100.0 32 ............................. ACGCAAAGCTCAAAGAGCGCCTAACCGCCGCG 160971 29 100.0 32 ............................. TGTAGCATGTCCCAGAAACTAGCCGCGATAGG 160910 29 100.0 32 ............................. GACCCGATCCACCCCGCACACTACGGGAAAAT 160849 29 100.0 32 ............................. GGCAAAACGTAGACCATGTCTCGATTGAGTGG 160788 29 100.0 32 ............................. ATTGTCGGACGCTCTGATCTGGATACCGTGAT 160727 29 96.6 32 ............................T ACAAAACCAAATACCCCAAAAACGACATCTGG 160666 29 100.0 32 ............................. AAGAGAACGAGGCCCATAATCCCGATAAGGCC 160605 29 100.0 32 ............................. TGGTTTCTCGGTCGGTGGGCACAATGTGGACA 160544 29 100.0 33 ............................. GCGGCCATGATTACGCCAAAACTGGACACGGTA 160482 29 100.0 32 ............................. GTCGCGCCGATGACCTGAACTAGACCCATTGC 160421 29 100.0 32 ............................. TGGCTAATCATTTCTGCGATGTAGTACGCGCC 160360 29 100.0 32 ............................. TGTGAATCGAGAGCTGCGCAATGTTGGAGGCG 160299 29 100.0 32 ............................. CGGAAACGGTCAATGAGCAGACCCCCGCGCCG 160238 29 100.0 32 ............................. TTCATCATGGCAAATCAGTTTTACAAAACAGA 160177 29 100.0 34 ............................. TCCTACCTATCGAACCACCCGGGCACCGGCGAGT 160114 29 100.0 32 ............................. CACCGTTTGATACGGTAAATGCATATTGAACA 160053 29 100.0 32 ............................. TTCACCGTCCTGTTCAACGGCATCAATGTAAA 159992 29 100.0 32 ............................. CAAATCCGCTGGAAGATGCGGGCAAGGCTGCG 159931 29 100.0 32 ............................. AATGGTGACACTATGGTGGCAGCAGGCGTCTC 159870 29 100.0 32 ............................. GGCACCTGGCCCGCGCTCGCAGACGCATACGC 159809 29 100.0 32 ............................. CCACCGCCCTCTCATGCGGTTACCTTATCGGT 159748 29 100.0 32 ............................. GCCATCGAAGTGCTGAGCGCGTATGACCACAG 159687 29 100.0 32 ............................. TACCCTCGCAGCAGCAGCATCAGCCACCAGAG 159626 29 100.0 32 ............................. TGCCAGGCAGGCGCTTCAGAGGTTCACCCCTG 159565 29 100.0 32 ............................. GAACAGGCGCTCCACGCGCTCTACTTTCCAGG 159504 29 100.0 32 ............................. ATCGACAGTCATCTTTTTCATGGTGTTATTCC 159443 29 100.0 32 ............................. CACCCCTGAAGTCGCAGCAGACCAGCACGTCC 159382 29 100.0 32 ............................. TTGTCCACGACAAACTCGAAGAAGCCAAAAAA 159321 29 100.0 32 ............................. ACCACGAACCAAGCTGAAGGCAGCCAACAAGC 159260 29 100.0 32 ............................. GGGTGAATCTCAGTTCGCCCGTCTTCACCCGG 159199 29 100.0 32 ............................. GTCGAGACCGTCCACCATGAAGAGATTTTCGA 159138 29 100.0 32 ............................. AGGGAGTCTTCTGCAACGTTGACCCATTGGCA 159077 29 100.0 32 ............................. GGCTACGCGCCACCCGCCCCACCAAAGGCAAA 159016 29 100.0 32 ............................. GTGGCAAGGACACCCTTACCCGGCGCAGTAAT 158955 29 100.0 32 ............................. GCCTAGAGCCTTAGCGACTGTCTCAGTGGTGA 158894 29 100.0 32 ............................. CCGGCGCAGGTCTGCCCGAACACAAGTTCAGG 158833 29 100.0 32 ............................. GCGCCTTAGATTCAGGCAACCAAGCCCAGACG 158772 29 100.0 32 ............................. TACCGGATGAACGTGACCGACTCACTGACCGA 158711 29 100.0 32 ............................. CGATAGCACCATGCTATGACTGCATAATGCTA 158650 29 100.0 32 ............................. TACTGCGCCAACTCGCGGTTCATGGCCGCTAG 158589 29 100.0 32 ............................. GCCGACAAGCCCGACTTGGACAGCACGAGCGA 158528 29 96.6 32 ...G......................... TACGAGGCGGAACCTGCGAAGGCAAGCTGAGT 158467 29 93.1 32 ...G..................C...... TGGAATCGCCCGCCTACAAGCACCACATTTCT 158406 29 96.6 32 ...G......................... CGCGGGCGTTGTACCAGACGCCGTTCGGGAGC 158345 29 93.1 32 ...G........................T AATGCGCGCCTGGCCGCCGAGGGTGCCCCGGT 158284 29 100.0 32 ............................. TGCTGCAGGTCATTCTGCATGGTGCGGTCACT 158223 29 79.3 0 .........T..G.C.A..........TT | ========== ====== ====== ====== ============================= ================================== ================== 84 29 99.5 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : GTTTGTGGAATGAGCAGGGTGAGGCTCAGCGCGGTGGCATGAATTATAGCGATGGAGAGGTGGACTGATGATTGTTATTGTTTTGTCTGCTTGTCCGGTGAGTCTTCGCGGTGATTTGACGAAGTGGCTTTTGGAGATTAATCCTGGGGTGTTTGTTGGGCGTGTGAGCGCTAGGATTCGTGAGAAGTTGTGGGCGCGTGTGTTGGAGTCGGGTGGTACTGGTAGAGCGACGATGGTGTTTCCGGCGGATAATGAGCAGCGGCTTGAGTTTCGGGTGAATAATGCGGATTGGGAGCCTGTCGATTTTGAGGGGGTGAAGCTGATTTATCGTCCGGTTGTTCGTAAAACGGTGCCGAAATCTGGGTGGAGTAAGGCGAGTAGATATCGTCGTGCTCGCCGGGGTTAGTAGTGGCTGCTTATCGTGTATTCTGGAGTCAGGCTCTGGCTCCAAAGTGATTCTATTTTGCTGATGTAGGGGGTAAAGTCCCATGTCAGCAAGT # Right flank : CGGCGTTGCCGTTCTCTTTTCGCTGGTCTTGGATGGGTTTGCCCTCTGAGCCTGCAGGGCATCTAGAAATGGCGATGAAAGCCGAATACATGTAGTAGGTCTTGGCGTCTGGTCGTTTGGGCTGGCAGGCATTATAGTCGTGACTAATACTGTCCAGATGGTTGGCTACTTATTGACTGCAAGAATATAAAAACCCCGGTGCCACCGCCCAAAAACAGGCGTGGGAAAAGGCACCGGGGACCCCCACCAAACGAGGGGGACAGAAGGGCGTGAAAATCATTAACACGCAGAAGAAAGGATAACAGCAATGGCAAAGAAAGAGGAACACACAGAGTTCACCGTGTATCTGTCCTCTAAAGAGGTTGCGGCAATGGCTGGAGTGGAGGTTAAGACCGTGAATAATGCCCGTCAGAAGGGCGACCTGCACCCCGCCTCACGGACTGGCAGCACCTGGGGTTATTTTGAATCCGAGGTGCGCCGCTGGATGGATTGGCGCGAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //