Array 1 4355-4971 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZCN01000054.1 Prevotella copri strain iAK278 NODE_32_length_20456_cov_4.18288_ID_191, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 4355 30 100.0 35 .............................. TACAACAGCCCCGTAGTGGTGGCGAGGAAGCAAGA 4420 30 100.0 35 .............................. TACAACGATAAGAAAAAATTAAAAACGGTCCTTAC 4485 30 100.0 35 .............................. TACAACATATGTAGCCCCGAATTACGGGGCTGAAG 4550 30 100.0 35 .............................. TACAACGTTTGCTGCATGCCAATTGAATCCAACTC 4615 30 100.0 35 .............................. TACAACTTCAAAATCGTTGAGGGGCGCAGTATCAG 4680 30 100.0 35 .............................. TACAACAGCAGATGGCGGCGGTTGATGCTAAGATG 4745 30 100.0 36 .............................. TACAACTTCATCGTGAATCTATTTGAGAATATCACA 4811 30 100.0 36 .............................. TACAACACTTACTTTGCAAGCGACGGCGAAGGCGTG 4877 30 100.0 35 .............................. TACAACCCAGGAGATAAAGACGCAGAACCAGCCCA 4942 30 76.7 0 .....................T.GGGTG.C | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 97.7 35 GTTGTGGTTTGATGTAGGAATCAAAAGATA # Left flank : ATATTATTCTGGAGAAATAAAAAAACTTTCCTTACCTATTATGACATGACTGAAGATAGACTAAATGCTTATCATATAATGTGGTTATTTGTGTTTTTCGATTTACCTGTTACTACGAAAAAAGAGATGAAGGCTGCTTCTCTTTTTCGTAAAAACTTGGAGAAAGATGGTTTCTCTATGATGCAATTTTCTGTCTATATCCGTCATTGTGCATCAAGGGAAAGTTTGGAAGTGCATGTAAAACGGGTAAAATCTTTGCTTCCGGAGGCTGGAAAAGTAAGTTTGTTAAGTGTAACAGATAAGCAATATGGAGATATCTATAACTTCTGGGGTAAGCCCAAAAGTATTAATAAGAGTAAAATATCGAAAAAAGTTATCAGCGAACCTATTCAATTGGAGTTTTTTTAGTACTTTTGCATTAGAAATTATATCCTACTCACCATTTCTTATTAGATAGAGTGTTTGTTATGCGCTGAAAATCAGTATGTTCAAATCTGTAG # Right flank : CCAGTTCCATGTTCTCGTTTTTGATTATGTTTTAGCAACTTAGCACACTGTAAATCAGTAAATTAAGCACAAAATATAAGACAAATTTAACTATCAAAAAGTCTGATGTAGATTCGCACAAGATTATAGTTTATTTAGCGAATGATTATCAATGACTTAGATGGTTATTACATTGTTTTTGATACTAAAAACTGGAACACAGAACTGGACACCCTATGTAGGAATCAAAAGATATACAACTGATGAGCCGCATAAAGCAACGATTTTAAGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACTTCTGACTGAATCTTATTAGTAAGGTTAAGGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACAACCATATATCACATAGTCAATGGTAAGAGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACGCAAAGTTCCAAAAGTAACACCATCTTCTGTTGTGGTTTGATGTAGGAATCAAAATATATATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGGAATCAAAAGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATGTAGGAATCAAAAGATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 5186-5471 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZCN01000054.1 Prevotella copri strain iAK278 NODE_32_length_20456_cov_4.18288_ID_191, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 5186 25 100.0 40 ......................... TGATGAGCCGCATAAAGCAACGATTTTAAGTTGTGGTTTG 5251 25 100.0 41 ......................... TTCTGACTGAATCTTATTAGTAAGGTTAAGGTTGTGGTTTG 5317 25 100.0 40 ......................... AACCATATATCACATAGTCAATGGTAAGAGTTGTGGTTTG 5382 25 100.0 40 ......................... GCAAAGTTCCAAAAGTAACACCATCTTCTGTTGTGGTTTG 5447 25 84.0 0 ...............T.....TT.T | ========== ====== ====== ====== ========================= ========================================= ================== 5 25 96.8 40 ATGTAGGAATCAAAAGATATACAAC # Left flank : GTTTGATGTAGGAATCAAAAGATATACAACAGCAGATGGCGGCGGTTGATGCTAAGATGGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACTTCATCGTGAATCTATTTGAGAATATCACAGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACACTTACTTTGCAAGCGACGGCGAAGGCGTGGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACCCAGGAGATAAAGACGCAGAACCAGCCCAGTTGTGGTTTGATGTAGGAATTAGGGTGTCCAGTTCCATGTTCTCGTTTTTGATTATGTTTTAGCAACTTAGCACACTGTAAATCAGTAAATTAAGCACAAAATATAAGACAAATTTAACTATCAAAAAGTCTGATGTAGATTCGCACAAGATTATAGTTTATTTAGCGAATGATTATCAATGACTTAGATGGTTATTACATTGTTTTTGATACTAAAAACTGGAACACAGAACTGGACACCCT # Right flank : TATACACGAGAATGGCATAGGGGCTGGCGCAGTTTCTGAATATCTTGGAATATAGGCAAGAAAGAGTCTTGTTCTCCACGGACTTCAATCTTTTCAAAAGAAGAACGGAAAAGATAAAAGTATCTCTGTCAGTATATGATAGTGCGGTAAAATGTATTGAGGAAGTGGAATGTGGCAAAAGAACTCAGCAAAACTATTCTTCTGAACTAAGAAACACCATTTGCCCAATAGATAAGAAAAACAATGCTGATGTGACGATAAGGGCCAACACGCCGTAGATTGATTGGGGATTGTTGACACAGTATCCTATGCAGGCAACCCAAACAGCGAAGGACAAAAGGCTGTTGTCACCCAACGCTCATATTTCTTAGAGTGCTTCGGGGGAGTATCTTCGCCTACTACTTCAATGCTAACGATTTCTACCTTTATTTCATGTTCGGGCTTGTTCGATTCTTCGTTGTTGTTTGCAGCGTCTGATATGCTGTTGTTGTTCTGATAAT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGGAATCAAAAGATATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //