Array 1 399113-400998 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH165159.1 Neisseria wadsworthii 9715 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 399113 36 100.0 30 .................................... GAAATAAACTACGAGATAGGCGGCAAAATA 399179 36 100.0 30 .................................... GAGAGGATGTCTGCTCGGCCGAGATGTCCT 399245 36 100.0 30 .................................... TTGACATAGCCGCCCTCGTGGGAGAGGACG 399311 36 100.0 30 .................................... CCTTCTGTATATACATCCACATCTTTTTTT 399377 36 100.0 30 .................................... ACCCAACATGGCGTACATCAGTAAGCCCTC 399443 36 100.0 30 .................................... TCGGCAGACTGCACAGGCGTGGTGTAAAAA 399509 36 100.0 30 .................................... GACAAAATGAAGCTGCCTCACGATGTGAAG 399575 36 100.0 31 .................................... TTTGATAGCGATGCTGAAGCTTTTGTTTATA 399642 36 100.0 30 .................................... CAGCCATTGTTTCCATTGTTTGGATTGCCA 399708 36 100.0 30 .................................... TTCTCGCAACCCCTCCGTATCCACCAGCGG 399774 36 100.0 31 .................................... TATAGCTTTTGACCGTACGCACCATGGCGCC 399841 36 100.0 30 .................................... TCCCGAATACACCCATAGGACGCGCAGCGG 399907 36 100.0 30 .................................... GGCACCGGTAAACATATGCGGCTCAAGCGA 399973 36 100.0 30 .................................... AAATTCCCCATCATAATGTTCTTCACAATT 400039 36 100.0 30 .................................... TGGCGGGTGCGCAAATGGCAGCCGGATTGC 400105 36 100.0 30 .................................... TACGAAATGTTCGTATGCTTCGCTTTTTGC 400171 36 100.0 30 .................................... CAAAGCGATGGAAGATAGAGGCGACACGGA 400237 36 100.0 30 .................................... TTATCTGCCCGGCGGGAGTACGCTGAAAAC 400303 36 100.0 30 .................................... GGCAGGTGCTGTCGTAGTTCCTCCCCCTGC 400369 36 100.0 30 .................................... AGCTTATCGTCGCTAAAGCCTATTGCCCGG 400435 36 100.0 30 .................................... TATGTGGATGTTATTTACAGTGGCTGTGTC 400501 36 100.0 30 .................................... TTGCGGGGGCTGCCTAAACGGATCGAAGGG 400567 36 100.0 30 .................................... CCCTTGAACCCTTGCTCGACCGCGACTTGG 400633 36 100.0 30 .................................... CGGTTTCCAAAGTGATGATTCAGCACCTGT 400699 36 100.0 30 .................................... ATTGAGAGCGTCTGCGATATTCGGGTTTTT 400765 36 100.0 30 .................................... TAGCAACGTTATCAGGCTGGTCTACACATT 400831 36 100.0 30 .................................... TTGAATTTGAAAATCCTGAATAACCGGAAT 400897 36 100.0 30 .................................... AGACCTGAAAACATTATATAGGCAGAAACA 400963 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 100.0 30 GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Left flank : GCTGGAGTTTCCCGAGCGCAAAATAATAGAGAGCGAACTCTTGGCCGTGCAAAAAGCATTTCAGGCGGATTTTGTGTGGCGCGACACAGCGCACAGCCAAACTTTACAGCAAGAGTTGAATCTGTATTTTGAAGGCCGTCTGAAAAACTTCGCCACGCCGCTCGACCCGGTCGGCACACTCTTTCAGCGGCAAGTTTGGCGCTCATTGCAAAGCATTCCCTACGGCGAAACCCGCAGCTACAAGCAGCAGGCGGAACGCATCGGCAAACCGCAGGCCGTGCGCGCCGTAGCCGCCGCCAACGGGCAGAACAAAATTTCCATCCTGATACCGTGCCACCGCGTGATCGGCAGCAACGGCGACTTAACCGGCTACGGCAGCGGCCTTGCGCGGAAGAAGGCGTTGTTGGAATTGGAAGGCGCAATGCCTGTCTGAAATAAAGATAAGATGGAAATTGATATGGTCGTGACGGTGAAAAGAAGAAAATAAAATTTCAAGTGTG # Right flank : TACTTCAACAGGGAAGCCTTATAAAATAAGGCTTCCCTGTTTTATTTTGGTTAAAAAAACGACTTTAAAAAAGTAAAAGTTGGTCGGCATTGACCTTTTTTTCGCGGGGTTTTGGCTCTCCAATAAGCATAACCATGCTTGCATATTGTTTTTCTGTTACCTCCAAATAGCGGACTTGGCCTTCTTCGGGCAAATGTACTAACAGTCTTTTGTGGTGTTTCTGCAACGAGTCGCGTCCTTTTACAATGCGTGAATAAACCGATAATTGCAGCATGTGATAACCGTCTTTCTGTAGAAATTTACGGAATTGGTTGGCTGCTTTTCTTTTGGCAGCGGTGGTTACAGGCAAGTCAAAGAAAACGATTAAGCGCATAAATTTGGCCTCACTCATAATCATGTACCTTTAAGCGCAGCATTTGTGGCAGTTTTAAAAGTTTGGGTTTGTTTTGGCTGATGGCCGTCTGAAAAGATTGTATGGTGCGGTCTATGGCAGCCAATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //