Array 1 529625-526894 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSPB010000012.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-050 tig00000192, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 529624 26 100.0 39 .......................... ATAGCTGTAATCAATGTACCTTCAGTAAATTTTGTCTCG 529559 26 100.0 41 .......................... AGATGACTTTCTGAAAGCGATGAATTTATGGAGCGGTCTCG 529492 26 100.0 40 .......................... ATCACTAAACCAACCCATGAAAATCTTGTTATCCGTCTCG 529426 26 100.0 41 .......................... TTTGTTAATTTGCTGAATATCCGCCTGAACGGTAGGTCTCG 529359 26 100.0 39 .......................... TTGCTCAACTTTTGGTGTAACTATATCAGGCTGGTCTCG 529294 26 100.0 39 .......................... TGAAGCATACTAATTTTTGAATTAACGATATCAGTCTCG 529229 26 100.0 39 .......................... TTTTATTTTGTATTATAAAAGCACTTCTGGTACGTCTCG 529164 26 100.0 40 .......................... TCCCTAGCCTCTCCTGTGGTGACTATTTGGTGCTGTCTCG 529098 26 100.0 39 .......................... TTGGCTGCTTTATAGCGAGTGTGGCCGTTTACGGTCTCG 529033 26 100.0 41 .......................... TGACAAACTGCCCTCTTCAGTCTAATTCATTTTTGGTCTCG 528966 26 100.0 39 .......................... CGGTCTTGTGGTCATAACTGGATAAAGCGAATTGTCTCG 528901 26 100.0 39 .......................... ACTTGAACAGGGTGAATCGTAACATCATAATTGGTCTCG 528836 26 100.0 39 .......................... TTGGTAGGCAGCTTGAGCTGCTTGATTAGCCTGGTCTCG 528771 26 100.0 40 .......................... ATTTAGGTGATAACCCATGGAAGGGTTGGAGTTAGTCTCG 528705 26 100.0 43 .......................... TTGCTGATGCTTTTGAATTTGGCGGTCATATCGTAACGTCTCG 528636 26 100.0 39 .......................... TTGCGTCATTGATACCTTGGCTCTTGCCATCTCGTCTCG 528571 26 100.0 42 .......................... TTTCACATTCGACCTAGCTAAGACATTATCACTTTCGTCTCG 528503 26 100.0 39 .......................... GTAGCTATTGTTGAGGCTTTGCAAGTACCAAGCGTCTCG 528438 26 100.0 41 .......................... CATATGTAGGTTGTCCTCTTGAAAAGTACCGTTACGTCTCG 528371 26 100.0 39 .......................... ATAAGCATTACCAACAACATCACAACCAAGCCAGTCTCG 528306 26 100.0 40 .......................... TCTTAATGCAAGATTAACAACTTCAATCGGCATAGTCTCG 528240 26 100.0 41 .......................... TCCTACAAATGTGATTCCATTATTGTCCTTATACCGTCTCG 528173 26 100.0 41 .......................... ATTGGACTTTTTAGTGCCAAAAATTACAAAGTTTTGTCTCG 528106 26 100.0 41 .......................... TAAAATATTGTCGATTAAGATGATTTCGGCCCCTGGTCTCG 528039 26 100.0 40 .......................... ATCTTTGGATCCTAATCTACTTGGTCCTGGCATTGTCTCG 527973 26 88.5 40 ...TT.G................... ATAGTAATCTTTAAAGTCGGAGTGTTGGCTATCTGTCTCG 527907 26 88.5 39 ...TT.G................... TTTTTTGTCAAGATTGTCTTTAACTTCGGTTGTGTCTCG 527842 26 88.5 39 ...TT.G................... TTAATCCACCCTATCAAATACCTAAAAACTGGTGTCTCG 527777 26 88.5 39 ...TT.G................... TAGAGTCCGAAACCTGCTTTGCGGAAAATATTAGTCTCG 527712 26 88.5 39 ...TT.G................... TTCACAAGAAAGCTTTGAGATGATTGTCCTTAAGTCTCG 527647 26 88.5 42 ...TT.G................... AATTATGACAGGTTTTTTAGGTGCTATGTTAGGAATGTCTCG 527579 26 88.5 39 ...TT.G................... TTTAAAGATGGATTTTCTAGCGGTATCTTAACCGTCTCG 527514 26 88.5 41 ...TT.G................... TTATATCAAGACATTTAGCATATGAAACCTTGTTGGTCTCG 527447 26 100.0 41 .......................... GCTAACCTTGCTAGCGCAATATGTTTGTGTTTTATGTCTCG 527380 26 100.0 40 .......................... TTCTTGCGCCCGACATCATTTTACTAGATCAGATGTCTCG 527314 26 100.0 39 .......................... TACAGGAGAGCAAGAGGTATCTATGTTATCTATGTCTCG 527249 26 100.0 41 .......................... TTGTAAAAACCAAGTTAAATACAAAGATAATAACAGTCTCG 527182 26 100.0 40 .......................... TCATCTTGACCTATTTGAACAACAGGGAAAATTGGTCTCG 527116 26 100.0 40 .......................... CAGTTTTGCAATGTTTTACAAAACCATACGACATGTCTCG 527050 26 100.0 40 .......................... CAAACTTCGGTATCGTATGGTACTCTACGTTTAGGTCTCG 526984 26 100.0 39 .......................... TTAAGAAAATTCCGAATGACTATCTCATTAGTAGTCTCG 526919 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =========================================== ================== 42 26 97.8 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGTTACCCACCTTTTATGATTTAGGAGATTGGTTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCAGCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTATGTGTTGATTATGGCCAGCGTGTGCAGCATTCAGTATTTGAGTGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATATGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGGGTCACTCATAAAATACTGGGAGACTCGCGCTAAAATAAGCTAAAAAATAGAGAAATGGGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTGTCATTTCTCTATAAACTGTGCTATACTGCGCAGTCTCG # Right flank : TTTGCTGCTATACAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGCTTTTTATGGTACTATGTCAAATAGATAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTATGATGTTCAAAGCAAGGTAAATACTTTTCTTGAAGTTGTCAACGTTTCTGAATCCAAAAGCATTGTGCTTGATACCTTTGATAAATTTGTTAGTCGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATTAAGGTGTTCAAAGCTGTTTTGAAGGGGTGATTGAGATGAGGCATAACTCAAAGAAGAGCTCTGTATTCTTTTCTTGCAAATGAAAAAGAGGCAGCTGATAAAGGTCATAATAGCCTTT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //