Array 1 2028-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZT010000150.1 Trichormus variabilis 9RC NODE_170_length_11678_cov_16.6546, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2027 37 100.0 34 ..................................... TGGTTTTTCTCGCGTTATGAATGTTTTTGCTTTT 1956 37 100.0 34 ..................................... AACGTTATGCCACTTCAAGGCAATAGCTTCCGAC 1885 37 100.0 32 ..................................... CTGCGGTCAATTGCCTTTGTGCATCAGTTTGA 1816 37 100.0 34 ..................................... CTAACATCGCCCTAGCTAAACCAATTAAATTCAA 1745 37 100.0 39 ..................................... TAAGGTTGAGCTAACTAATAAACCGCCGGAAGAAATAAC 1669 37 100.0 34 ..................................... TAACTTATTTCTAACTAGTAACTGAAGTTGATAA 1598 37 100.0 34 ..................................... CAATAATTATTAGTATTATTTCCATTTTCCTCCT 1527 37 100.0 34 ..................................... CAGTACAAGATGCTAATACAATTACTATTCAAAA 1456 37 100.0 40 ..................................... AAGCGTAAATCCGTTTTTAGCAGGTACATCTGGGGCAACG 1379 37 100.0 33 ..................................... AGGAACAATTGTTCCTTAAGCCTATGCCATCAG 1309 37 100.0 36 ..................................... CGAATCCCATCCTCTCCGTTATTCCAGCGATTTTAA 1236 37 100.0 36 ..................................... CAAACCCTTGCTGTATATGACTTGATCCAGATGATC 1163 37 100.0 36 ..................................... CAATTAATTTGGAATGTTGAAAGCTTTCATGGCTTA 1090 37 100.0 34 ..................................... ATGCTTAGTCTTCCGCTACATCACAGAAAGACTA 1019 37 100.0 38 ..................................... TTAGTTTTTTCTAGCTCTTGTTGTAGGAGTTGAATTTG 944 37 100.0 34 ..................................... AGACTAGTCCCGGCAAAGTGGCGGAAACAGGAAC 873 37 100.0 37 ..................................... TGCGGCAACAGTACATAATGCTTTTCAACTTTCAAAT 799 37 100.0 33 ..................................... TCTTTGGCTTTTAATTCATCTGGTTCTGGTGTC 729 37 100.0 35 ..................................... GAAGCATCTCACACCAGATGGCAAACTACAGCAAC 657 37 100.0 36 ..................................... ACTAGTACACCCTGGGTGGCTAGAGACACGCTAAGA 584 37 100.0 34 ..................................... AATTATTTTCTTGATTGGCTGCTGTATGGCTTTG 513 37 100.0 37 ..................................... AAGTCGGTAGTGATTTTAAGAAAGTTATCCTCTGCGG 439 37 100.0 42 ..................................... TTAGCTTAAGCCTATCCCTGACTATTCCCAGCACTTTATCAA 360 37 100.0 34 ..................................... AGCAGATGACCACTCAGACCAAGGACGCGGAGAG 289 37 100.0 33 ..................................... CAGGAATTGCAAAATCTTCAGGTTCATTAGTGA 219 37 100.0 34 ..................................... CTATATAGTTGTTTTGGATCTAGGTCTAAAAGTA 148 37 100.0 35 ..................................... TAGAAAAGCTTGGTCAATGTCTCAAGAACTTTGGG 76 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 28 37 100.0 35 GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC # Left flank : TGAAAGCATTACAGGATTTACCCTGTAATTTGCCACCGATTTTAGTTATTGACCAACAATTAAGTCGCACTCAAGTTACTTCTCGCAGTAGACTGACTCATCATAAAAAGCAGGAGTCAGAATCCATCACAGATGTGGCAAAAGCGATCGCTACCCAAATTGTCCCACGTTCCATCTCAATGGAAGACCTGTTAACTCAAATTCATCAAACTTTGACTCTCAATGAACGCTAAGGAGTGGCGAGGATGAGCGTCAACCTCTAGGTGTTTTTTTCCCAGTACCAAATTTTACGGCTGAAATGCTTATGCTGTAAGGATTTGCATCTGTTTGGCTTCAGTACGAGGTTGACGCGATCGCTTGAATCTCTTACCAGGGTAGCTTTTTCGCTATTTTTTAAGCTGCTACTCTTGACAACTCAATGGCTGAAAAGCTACCTTAGGTTCAGATTGACGCAACCGCACCTTGAAAACTAAATATAGTAAGCCTTCTAGACCCCGGCT # Right flank : CCATTAAAATTCAAAAACTAGGTGCAGACGATCGCGTTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 17593-17411 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZT010000015.1 Trichormus variabilis 9RC NODE_16_length_68671_cov_16.1266, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 17592 36 100.0 37 .................................... GATTTTGAAAGGCTGCATCCATTCTAGATAAGTTGGA 17519 36 100.0 37 .................................... GACTACTCTCATCCAAAGGTACAGATGGTAGTGATAG 17446 36 97.2 0 ..........................T......... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 99.1 38 GTTTCAACGACCATCCCGGCTAGGGGCGGGTTGAAA # Left flank : TTTAATTCACTAATCTGAACCTTGAAAATATAATATTTGTATAACAGCGCCGCAGTTCATGCTCTTTTGAGCCAATGTACTGTGATAAATCTGGGTTAGTTTGGTAGTTAGAAGACTGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCCATCTGTAGAATTCTATAGATGGGATAGGTGCGCTCCCAGCAATAAGGAGTAAAGCTTTTAGCTGTAACTGTTATTTATAACGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCCAAATATTTTTTTGGCGAATCGAAGCGGGGTCAAAATCCCTGGGGACTTGCCAAACTCTGAAAACCCTTGTCCTGTATTAAATCAAGGAATCATCTTGTCAATTGATTTATTTTTTTGATTTTCGGCACAAGCAGCTTTTTCAGGGACGTGTCAATTAGACATCTGAAAAGCTTGTATAACAAGGGCCTAGACGGGAACA # Right flank : AAGTTACAGTTATTAGGTGGGTTGAAAGTAGTAAATGCTTGTTATTTTAGGTTTAGACCTCAAAAAAATTACAGATATAACTTCGAGAGCTAATGTAACCAAAAATAATACTTAGCCCAGTGGAGTGCTACTATGTAACTGCATAGAGGAAAAGACGATGACAAATAATTTGTCGCTATGATATTTATGACAAATATTTTGTCGCTACAGACAAATAATATGTCGCTCTACATATAACCAACAAAAAAGGCTTGGTCGGGCCAAGCCTTTATGTATACCAAGCATTTACTACACCAAGCTTAATTTAAACCCTCTAGCACTTTAGTTCATCTGTCTTTAGACTGTATGCAAATTCTTTCAAACCTGGTATGAACTGGCATATTTACATACAAAAAAGGCTTGGTTCAACACCAAACCTCGATAATTGCTGTGCTTAACAACGTACTAAATTAATTTAAACTGGATTGTTGTCCTTATCATCTTCCTTTAGTATGTGTTGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGACCATCCCGGCTAGGGGCGGGTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 8066-7882 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZT010000024.1 Trichormus variabilis 9RC NODE_25_length_62021_cov_16.4874, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 8065 37 100.0 36 ..................................... GACAAAGGTAAAAAGACTTGGAGTTTGGAGGAACTT 7992 37 100.0 37 ..................................... TTCTCCTCCCTCCAGCGTCGCACCACAGGAATACTCA 7918 37 97.3 0 ..............T...................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 99.1 37 GTTTCAACACCCCTCCCGAAGTGGGGCGGGTTGAAAG # Left flank : CGATCGCTGCTTATAATTCTCGCCGAAGAACCTGATTGACAAAAAGCAGAACCTTGAAAATAGAATAGATATAACTAATAGCGCCGCAGTTCATGCTTTGTTCAAAGCCTCTGTACTGTGTAAATGTGGGTTAGTTTGACTGTTGGAAAACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGATGCTGCTGTCCCTTGAGGACAGGAATAAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACCGAATCACCTCCGATCAAGGAGGAACCCACCTTAATTATTTATTTTTGGCAAACCACAAGCGAGGTCAATTTTCCAGGGAGGTTTGCCAAAAGTCCAAATCCCTTGTCTAGTCTGCGTTTTATTTATTGGTATGTTTCGATGATTCGCCTTGAAGGGTGAAGTCGAGAGCAGATTTAGACACCTTTGCCAAAATCACTTTTGGAAGTGTCTCTAGATAAGGGTTTGGTCGGGCGGA # Right flank : ACCTTCATGCAAGGATATAAAAAATTTTAGGTGGGTTGAAAGGCGCACTTCGTTCGGGATTTTCCCTGACCGAAACAGTACCAATAAATCAAAGCTATTATAATAACAGCTTCTAATGCCAATACACCTTGATGACTAAGTAATTTGGCAACGCGGACAACAACTTGGCAATACGGACAACAATTTGTCAACGCAGACAAAGAATTTGGCAATCGACAACAATAATCGGGATGACTGGATTCGAACCAGCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGTTAAAAAATTTATACGCCTTTTTTAGCATAACATAAATAATAGTCAATACAGAAAAGACATCTACATCTATATATATAGATGAATCGGAACGGGATTTGCTTGCTAGGATTAGATTTGTATAACATTCAGTGGTAAAAGCGGATTGTGACTGTAAAACCAGACTGGTTGCGGGTAAAAGCGCCTCAATGGGAGCGCGTTGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCGAAGTGGGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 53964-50930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZT010000027.1 Trichormus variabilis 9RC NODE_29_length_60064_cov_15.8282, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 53963 37 100.0 35 ..................................... TTAAAGACTGTACTTCATAGGAGATTTGAGATAAA 53891 37 100.0 34 ..................................... AAGTGTACAGGCAATAGTTATTCCTATCGTGATT 53820 37 100.0 34 ..................................... CTGACGCTGTAAATAAACGCGCTGGTAATCCTGG 53749 37 100.0 34 ..................................... GCGAGACTTGCAATCATCTGGTAGCTCATCTGAA 53678 37 100.0 32 ..................................... ATCATTAGGGGTGAAAACTATATATAAAGTTG 53609 37 100.0 37 ..................................... GTAATCAGTTGAGTACCCAGTTGGAGGCGCTGCGGTG 53535 37 100.0 35 ..................................... GAGTACACTAGGTACTAAAACAATCCACCACCGAT 53463 37 100.0 35 ..................................... TTCTTGGAGACTTAGACGACTCCATAACATTACTG 53391 37 100.0 34 ..................................... AGGGGAAAAATGTTTTTCCCTGCTTAGTGATAGG 53320 37 100.0 34 ..................................... GTCCGCGGGTTTAGATTTGTACTGAAATTCCACG 53249 37 100.0 32 ..................................... TTTCCCATCGTAGATAAATAGTACCTATGTTA 53180 37 100.0 33 ..................................... TACTCAATAGCTGAACAAGCCTCAACAAAGACA 53110 37 100.0 34 ..................................... ACATGATTGATAGTCTTTGTTGGCTTCAGATTGT 53039 37 100.0 34 ..................................... AAAACTAGTGCCTTGCAGCATAGCCGTGAAAGAG 52968 37 100.0 35 ..................................... CGCCGATTACTCAGCAACCAATATCTCAGTCAAGT 52896 37 100.0 37 ..................................... TTTCTGAGCTTCAATTTGAGCTATTTGATCACGTAGA 52822 37 100.0 33 ..................................... AGAGAATCAACATATTGCTGACACCCACACAAA 52752 37 100.0 33 ..................................... GAGTATTTTAATTAAAAATGAACTTAATTAGAG 52682 37 100.0 36 ..................................... AATCCCTCTGCACCACCTGGAATAACCTTAACCCTT 52609 37 100.0 34 ..................................... TAAAGAGGAAAGGATTGTAACTGTACCTGCTTTA 52538 37 100.0 33 ..................................... ACGCAAAAGGCAGCTATGTAAAGTCTGCTACGA 52468 37 100.0 34 ..................................... TACTTTCTTGCGTAAGTTGAAATACGAAACATCA 52397 37 100.0 35 ..................................... AACGTTATGATGGGTCTGGCAGTTCTTCTTCTGGG 52325 37 100.0 36 ..................................... ATATATGATAAATGGGCTGAGAGTAACGGTGAACTA 52252 37 100.0 38 ..................................... CGGGGAAGCTATCTCAATACAGGAGAAAAAGTTCATCC 52177 37 100.0 34 ..................................... ATTTTGAAGCTTAAATTTTACGCCGGAGGGTAAT 52106 37 100.0 36 ..................................... ACTCTCAAAAAGAGTACGCTTTTTTAATTCAACAAA 52033 37 100.0 35 ..................................... CCTGCTTTGCATCTTCATTTAGTAGTCGTTTGTGA 51961 37 100.0 33 ..................................... TAACTCGGACGACTTACGCATGGTAACTTTGGC 51891 37 100.0 34 ..................................... CAAACCCTATGTTTCTAAAGTTAATCCCTTTGTG 51820 37 100.0 34 ..................................... TCCGACCAAGAACCGCCAACTTCTCCGTAATCTG 51749 37 100.0 34 ..................................... TTCATTGTGTTAATCGCTAGCCACTGAAAATCAT 51678 37 100.0 35 ..................................... GTAATTATCGACGTTAATACCGTCGTGTATAACGA 51606 37 100.0 34 ..................................... AGAGCATCTGAAGGCTGAAAGTATAGCCAAAGCC 51535 37 100.0 37 ..................................... AAGAATCCTAAAGAACGCCAGAAAGCAAAGATTACCG 51461 37 100.0 34 ..................................... CGAAACGGATATTTTGTTAACAAATCCTGACCTA 51390 37 100.0 33 ..................................... GATGCTAAAGGCAAGGTTAAATCCCTATATCGT 51320 37 100.0 32 ..................................... ACTGGTGCATATCCATGTTTCTCTGCTATATC 51251 37 100.0 34 ..................................... TGGGCGAGAAAGCTTGATGATTTTCTAGAAATAT 51180 37 100.0 34 ..................................... TTCTTCCCAGTATGAAAAGCCAATGGCGGAAACG 51109 37 100.0 33 ..................................... CACGTATTACCAACAGCACAAAGACCGCATAAA 51039 37 100.0 36 ..................................... CCAATATATCTGAATATTGTTTCTTAACCGTATTAT 50966 37 94.6 0 ................................A...T | ========== ====== ====== ====== ===================================== ====================================== ================== 43 37 99.9 34 GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC # Left flank : CCCCTTTGGCAGAAAAGGGGATTTATTTGGTTTTCTCTACGGCTTACCACCAAAATTAAACAACGGCGTATTAATACCCACCGCAGATACTGGCAATTCCACTCACTACGAAGTTTTTTACCGCTATTTAGTCAACGACAACATCGCCATTACCCCTGGCTTTTTTCTCGTCACCGACCCTGGTCATATTTCCAGCAACAATGATATTTTCATCGGTGCTATCCGTACCACCTTTAATTTTTAAAATATTGCGTCAACCCATAGATGTTTTTCTGCACAGCTTCAGTTTTTTGCCTCTATGCCTCATCCTGATTAGGTTGCAGCCCATAACATTAAAATTGGGGTTGACGCAATTACCTCTAACCTTCGCCATAACAGCTTTTGAGTTAATTTTTACCATACGCTTCTTGACAATCCCATGTCTGAAAAGTTATCTTGGCTCCATGTTGACGCAACTGAACCTTGAAAACCAAATACACCAAAGCTTTGAGAGCCAAGCG # Right flank : GATTCTGCTGCGTAAGTACTCTCAACAACAACCCTGACTTTGCGGAAAACCCAACAGGGTAGCCAAAGCAATACCTAAAGGCGATCGCCCAAAATATCTACTCATTCTTTTTGTGTAGAAAATTAAACCACTTACTTCTAGGCAACTAATCAAAGCGCGAGTATAAAAGAAAAAACAAACACAAATTAATACCTGAAATTAACAGAGAAATAACATGGCAAATCGCTCGCGCAAGCTAACGCCAAAATCTTCTAAGCAAAATGGCTCTGATTTGGAAGCGAAGAAACCTCAAATCCAGCAACAACAGGTAGGTAATACCGATTTGCCAAAAGAAGGTGATGGAGGAATTAATCAAACCCAGATACAGAAAGCGATTTCTCCATCAAAATCCTATAAACCATCCTCAATAATTGCGATCGCCATTTTACTTACAAGTGCTGGCTTAGTGCTGAGTTGTACCTGGATTGGAATTCTGTGGATATTTAACCCAGAACAGGTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 43145-45648 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZT010000036.1 Trichormus variabilis 9RC NODE_40_length_52186_cov_16.4361, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 43145 37 100.0 34 ..................................... TTGTGCGTCTTTTAAGTGGGGGATATAAGCGAAT 43216 37 100.0 37 ..................................... ACGGTCAAGGCGAAACCATACTGCACGCCCCTAGTGG 43290 37 100.0 38 ..................................... TAGCGATATCACAATAACTTTACCAGTGGTAACTATTG 43365 37 100.0 33 ..................................... TTTGCTAAAGCAAAGACTCAACAAGAAAGTGCT 43435 37 100.0 36 ..................................... TGAATGGCAAGAACTAAAAACTTATGTTTTTGATAA 43508 37 100.0 35 ..................................... TAAAAACACTTCTCCAACTGGAGGAAGAACCATTA 43580 37 100.0 36 ..................................... ATTAACTGAAGCCGTCCCCAGAGATTTTGTTTAAGC 43653 37 100.0 34 ..................................... TGCGATCGCGTCTCTTAAGACTTCGGACTGGTTT 43724 37 100.0 38 ..................................... CTTCATCACCTCCTTAGCGGTCGATACGTTCTTGTTAA 43799 37 100.0 35 ..................................... CAATAAAAAGACAGGTGTACTTATGACGTTTAGAA 43871 37 100.0 38 ..................................... ATTCTTTGTATTCTCTCAGGATGAATCAGCCTCACCAC 43946 37 100.0 36 ..................................... CTCAGGTATCTTTCCTGAGCGAATCTACGGCGTATA 44019 37 100.0 37 ..................................... AAAAATAGCTGAAGCCGCCAAACGGGGGAATGATGCA 44093 37 100.0 34 ..................................... AACGACCCAGATAAAGCCAGCACAACAACCGCAT 44164 37 100.0 34 ..................................... GAATGGATGATGCTTCTTTGTACCATTTAATGGC 44235 37 100.0 33 ..................................... CTCAGTTGCCACCAAAGAGGCGGGTTTAATTTT 44305 37 97.3 37 ...................A................. TATCGTATTTTTACTATTAATTCTATGCTTTGTTCTG 44379 37 100.0 34 ..................................... TTTGTATACACCCGCCTTCTCTGCCTGTAATCTG 44450 37 100.0 35 ..................................... GTTTTTTTTGTACGAATCCTAGATAAATATTTATT 44522 37 100.0 36 ..................................... TACCCCCTGGCATCCCCCACTGGTTCTTCCCTGGCA 44595 37 100.0 38 ..................................... ATCTTGCTTGGTAAATCGATGCGGCGGAAATTTGCCTT 44670 37 100.0 35 ..................................... AGACGGATACATCGAGTGGGAGCTTAAAAATCCAA 44742 37 100.0 33 ..................................... TACCACGGTAACAAGTCAAGCGATCGCTGCTAA 44812 37 100.0 31 ..................................... CTCCAAGGTGTATACTATCAAGTATTTTTAG 44880 37 100.0 36 ..................................... TGTTCCTGGGTTGGTGGGGAATGCCTTAGTATTTTC 44953 37 100.0 38 ..................................... GCATCTTGGGTGGCATTTGCACCAAAAACTTGAGTTAG 45028 37 100.0 36 ..................................... CAGGTATAGAAACACCTGTAGTATAGGTTTTACTAG 45101 37 100.0 38 ..................................... GCCAACCAACTTGCCACACTCAGGGATCGTTCTGCTCA 45176 37 100.0 36 ..................................... ACCTAAAGAAGCTTTAAACGAGATTGTGAAAAAATA 45249 37 100.0 34 ..................................... AAAAACTTGCAGAATGGAAAAACCGCCAGCGCGA 45320 37 100.0 33 ..................................... AAGTTTTCCATTTAAGTGCTAAAGCAATAACAA 45390 37 100.0 34 ..................................... TAGTTATACAGAGATTATCAAAAGCCCCTGCATA 45461 37 100.0 38 ..................................... TAACTACTCTAAATAGTGAAGCTGTAAAAACTTCAGGA 45536 37 100.0 39 ..................................... TTAACAAAGATGGAAAGAAAACAAATACTTTCCATGTAA 45612 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 35 37 99.9 36 GTTGCAACACCACATAATCCCTATTAGGGATTGAAAC # Left flank : GCTATTGTCACACTTGCCAGTAACTTGGAAATGAGTGTAGTGGCTGAAGGTGTAGAAACAGTCAACCAGTTGGTACAATTACAGTTATTAAAATGTGACCAAGCCCAAGGGTATTTGTTCTCAAAACCCTTAAGTAGCGACAAAGTTAGCTTGTTATTAGCTGCAAAAACACAATATTAGAACACAAAATCTTGGCTTATCCGCCATATTCAGTTTGGAATCAGAAAATTTTACGGAAACAACGAGCGATCGCGTCAACCTATAGGTGTTTTCCCGTTAATCTCAATTTTTATAGCTTAATGCCTTATCCTCTATACATTTGAACGCAGTTGACCTCTTTCCTGGGTTGACGCAACTCCTGAAAGCCTTGCTATGACTAATTTCTAGTATTTATTCTTATTGTTCCTCTTGACAACCCAATGTCTGAAAAGTTATCTTTGCCACAGATTAACGCAACTGAACCTTGAAAACCAAATACAGCAATACTTCGGCAACTAGTC # Right flank : CAACATGAAATTTCAAACTCTTTATCCTCTCTGCGTCTGTGCGTGATAGAAATCATGCCGCATTGCATTGATGCAACGCCCAAGCCCCGATTAAGTCTTGACTTGTTCCCTGTATACCCTGGGTGTAATACCCATGAGTTTACGAAATACATTTGTGAAGTGGCTTTGGCTTTGAAAGCCGACTTGGGTACATATTTGCTCTATGGTTTTGTTAGTGCTACCCAGTAACTTTTTTGCGCGTTCAATTCGGCAATTCATGACATATTGATGTGGTGCAAAACCAGTTGATTGCTTAAATTGGCGCGAAAAATAATACATACTCATTCCTACTGCTGTGGAAATATCAACCAAAGTCAAATCTTGATCAAGATTTTCATGAATGTAGGAAATTGCTTGTCTGAGTTTCCAATGTGAAAGTCCTTTATGATGATGGTCGTCAAGGATGGTTCCACCTGTTACACAATAGTGTTTGAGTAGGTGAATACAAAGCGTGGTCGTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACACCACATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 14676-14854 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZT010000038.1 Trichormus variabilis 9RC NODE_42_length_51181_cov_14.9951, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 14676 35 100.0 37 ................................... GGGGGCTGGGTCATCATATTGATCTCGCTCAGTCCGG 14748 35 100.0 37 ................................... ACGATCGCAACCCTTGATTCATGAAATGCTTGGTAGC 14820 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 3 35 100.0 38 GTGCTTTAACATTAGATGTCGTTAGGCGTTGAGCA # Left flank : TAGGTGAAAGTCGGGATTTAGTGAATGATGTTACCCTTTTACCTAAAAATTACTATGCAGAATCAATGCGATGGTTAATTCGAGATGAATATGGGTTACTAACTTTACCTTACTGGGTAGACCATGTAGGTTCGCGGGGAACGCGATGGCTACGTTACGAGATTCAGAAATGTCCAGTCTTTCAACCACCTGAATTATCTTGGACTTCAGTTCAAAGTAATTAGAGGATATCTTTACTTTTGCAAGCACCTCTGCTTGGGAAATTTAAAAACTATAGAAAGTAGCCTTAATTCGTTATTCTACAAGCCTTTTAAGGATTTTATATGCTTCTAGAGTGCTTGCAATTTCCTGGAATGCTCTAAATACAAGAGTTAGGAGTGTTAAAAACTTTACTTTTGCTATGAATAGCTATTAATTTTTGCAACTTGGCTAACCTTAAAGAGTAGGTGCTTGTAAAATTGATGTAGAGCTTAGGCAAGTCAGCAAATGTGGCTATCGCT # Right flank : AGGATTCCCAGAGGCGAATGTATTTACGGGTTATTGTCTTTGCTAGAAATATGTTGTCAGTGAAGCCAAGATTAGCCCTCTTGATTACCATCATTCCGAGAAATTTTACTGAGAATTTTTTCCCACTGCTGAATCTGGTTCTGTATTTGTAATTGGGGATGGGCTTCCCCCCGCCGTAGGCGATCGCTCAAATCTTGACTATCATCAACAGACAAATCCTGACCGCTCAATCGCTCACGGTAAAGAGCAATCAGTTCGGTTAGGGCTTTTTTATTGCTTGATTATCCTCCTGGGTCAGAGAACTCACATTGACTGGGATCAGCTTTCTGCCAATTCTCTCGACAAACTCAGACCGACTTAAATCCATGCTGTCAGCGATCGCATCTAATCCATCAATCCCGGTAGGAGTTAGGGCTAGGTTAACTCTCTTCTTTACCTCATCGTACAGTTCTGGTACGTCTTTTTGACCTTTTTGCCCTTTCTTACCCATTGCCGTCTAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTTAACATTAGATGTCGTTAGGCGTTGAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 42209-41300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZT010000054.1 Trichormus variabilis 9RC NODE_59_length_42209_cov_14.715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================================================================================================================================================================== ================== 42208 37 100.0 34 ..................................... CATTAAAATTCAAAAACTAGGTGCAGACGATCGC 42137 37 100.0 34 ..................................... CAGAAAAAAGATAGAAGCCGATTTGCGGGAAGAC 42066 37 100.0 34 ..................................... CGCCTACGAGGGTACAGAGTTCGCCCCCATGAAC 41995 37 100.0 35 ..................................... ATCGCTTAATTGTTGCTGTACTAGTGATGCGGCTA 41923 37 100.0 32 ..................................... AGCGCCTCTGAGGTTAGCGCTTCTGAGGTTAG 41854 37 100.0 34 ..................................... CATTAAAATTCAAAAACTAGGTGCAGACGATCGC 41783 37 100.0 34 ..................................... CAGAAAAAAGATAGAAGCCGATTTGCGGGAAGAC 41712 37 100.0 34 ..................................... CGCCTACGAGGGTACAGAGTTCGCCCCCATGAAC 41641 37 100.0 35 ..................................... ATCGCTTAATTGTTGCTGTACTAGTGATGCGGCTA 41569 37 97.3 196 ....................................T GGCGCAGCTAGGACACTTGATTCTTCCATTGCCTTGTTTTAGTGTTAGTTCGACGAAACCTAACCCCAACCCCTTCCCTACAAGGGAAGGGGCTAAAAATCCACAACCAAGTACCAAATAATCAGGGTTTTAAGCCTCTCCCCGCGTCGGGGAGAGGTTTGGAGAGGGGTTATTCCGAATTTATCAAACCCACGTT 41336 37 89.2 0 .......C......................C....CA | ========== ====== ====== ====== ===================================== ==================================================================================================================================================================================================== ================== 11 37 98.8 50 GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC # Left flank : | # Right flank : AACTCTTAATATCACCTGTACCTACAGCCGCTTTACATAGAGTTTTAAAAAACAAACCCCGACTAATTATCTATTTAAAGATAGAGGGTAGAATACTAGGAGCCAACCATAAACCGTAACCAATAAATGCAAATACGGCTGTAATGACAGCAGTAACGACATAGCTGAGGCAAATTAGTAAACCATCAGATTCAATTGTGGCGATCGCTAATAATAAAATACCTACAGTAGGTATCGGGTTAGTTAAGGGAATTGGTGAGATGAGTAATATTGTCAACCAAGATATACAAAACCCATTGATACGCCAAGTTAAAGGGTTATCAGCAATTTTACTTAAGCGGGGACGGGCAATTTTCTCTACAATCTTGGTGACACGCCGCAGATTTTGAAGAAGAAACTGGGCAAAAGGACGGGGGAATTTATAATGAGCGATTTTTTTAGGTAGCCAAGGCGATCGCCTACCCAAAACCATCTGTACCGATAATATCAGACAAGCAGCA # Questionable array : NO Score: 7.56 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-1.63, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 7889-8139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZT010000077.1 Trichormus variabilis 9RC NODE_85_length_32376_cov_16.4284, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 7889 37 100.0 34 ..................................... GCTTCACACATTGCCAAAGACAATAGACGTAGCA 7960 37 100.0 35 ..................................... CGATATGCTAATAAATACAACCTATGCCATAGAAG 8032 37 100.0 33 ..................................... GTGTTACTCCTTAAATCTGGATTTAAGCCACAG 8102 37 86.5 0 ........GA........A.A...............T | G [8127] ========== ====== ====== ====== ===================================== =================================== ================== 4 37 96.6 34 GTGACAATAGCCCTTCCCGTGTTGAGCGGGTTGAAAG # Left flank : AAAGCGCGAGATTTAGCGATCGCAGCTTACTATTTACGCCAAAATAAATCTTAATTTTTGATTAAGCAAATATACTGAACCTTGACAATAAAATAAGTAATAGCGCCGCAGTTCATGTTAAACCTCTGAACTGTGAAAAATCTGGGTTAGGTTGACTATTGGAAAATAGTCCTGCTTTCTGACCCTGGTAGCTGCTCACCCCGATGCTGCTGTTTCCGAACAGGAATTAGGTGCGCTCCCAGCAATAAGGGCGCGGATATACTGCTGTAGTGGCTACCGAATCACCTCCGATCAAGGAGGAACCCATACCAATCCTTGTTTCCAGGCATTAGAAGAGATTAAAAATTTTCAGTCGATTCGCGCTTGCTTGCTGTGAAAGGATTTTAGCGTTTAATGGCACAAAAATTGCTCATTCAAACGGCAGTTGAAGAAGCTAGGAATATAGATCCGCGCTATCAACTCTGGAATCCTCCACAAAACAAGGATTCTATACAGGAAGG # Right flank : TAATTATGTATGTATTCATCTCCATTAGGATGGGTGAGAGTGATAATAACCATTCACGAAAGAATGGATTGAAAATGTAATACCTAACGATAAACAGAAATAGGCAAGTTATATAAATCTTTCCGGTGCAGGACTGGTTGAAATATAAAGATTACAAGATGTGGGTATGGGTTGAAAGGGTTCAAATCCGTCTGCTTAACTTTTGCTGCCAAGCATAGTGGTTAGAATAATTGTGTGCGAAATAAAGAACAAAAGTTTTTTGTTTAACCAAGGTATAGCAAAAGTTTTTAGAGCTTGAGCTAAAATTGAGCTTATGGTCTTCTATTTGATAGGACTGATGTTGACCAATCACCCCACACAATCGATTAGTCTCAAATATTGCGACATTAATTTGTGAACGGTTATCTTAAATGAGCCGCGACACTAATTAGTGAAACAGCGACATTAATGTGTGAACGGCGACATCTAATGTGTGAATGTACAACAAGCTAAGAGCTTCT # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATAGCCCTTCCCGTGTTGAGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 41938-44356 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZT010000048.1 Trichormus variabilis 9RC NODE_53_length_45802_cov_15.7253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 41938 37 100.0 33 ..................................... ATACCTAGATTCCCACCGAATACAATCCAATTG 42008 37 100.0 37 ..................................... AATTCATTAAGCCTAGACGATCTTGTCTGCACTCGAT 42082 37 100.0 44 ..................................... GATGAGCTAATTTCCAATGCCAGTCTTTACGACGGTTGGCGATG 42163 37 91.9 34 ............A....C..............A.... AGCAATTCTCAAACCAGCCCGCCACAAGCAATTT 42234 37 100.0 35 ..................................... GTCAATTGGTTTAAGTTGTAGCACTCCTATCTTAT 42306 37 100.0 35 ..................................... ATCGCAAGAGATGTAACGCCTAAGAGTAAAAAAGA 42378 37 100.0 36 ..................................... GTAAAAATCATGATTTTTACTATTGAAAAAATCCTG 42451 37 100.0 39 ..................................... CAATTTAACTTATTTGATAGTGATATCTATCGGTATATA 42527 37 100.0 35 ..................................... AAAGAAGTTGCAAGTAGAGCTAATTTAGCAATCAC 42599 37 100.0 41 ..................................... ACTATGTATGGGGGTGAATATTAGTGGCATTTCGTCCACCC 42677 37 100.0 34 ..................................... ACTATTCTCTGCCGCTAAATCAAAAACAGAGCTA 42748 37 100.0 35 ..................................... CAACTTACTGGGACAACCGCAGCAACCACCTTAAT 42820 37 100.0 33 ..................................... GAGTTGGTTCGACTGATAGTTGATTTGAACAAG 42890 37 100.0 33 ..................................... GCACCTGAGATGACGCAAGCAGCAAAGGCAAGC 42960 37 100.0 32 ..................................... AAAGTTGGTTCCGCCATAAAACTGATTTTTGA 43029 37 100.0 34 ..................................... GGGAACGCGCCCTTAAGGTTTATGAAATTGTCTA 43100 37 100.0 33 ..................................... TAAATCGGTCGAGCTAGTAACGCTTCGGCTTGC 43170 37 100.0 34 ..................................... AGTGGTATCTTTGGCACAATCTTCAGGATTGTCG 43241 37 100.0 33 ..................................... CGAGTTACCGCCCCTTTAATCGGTAGGGACAGG 43311 37 100.0 33 ..................................... GGAATCAGGGAAAGGGTTAGGACCTGCAAGATT 43381 37 100.0 35 ..................................... AGCGAATTAACACTTTATTAACCTTCTCTATTTGT 43453 37 100.0 35 ..................................... TAAATTCCTTAGCTAAATCCAATAAGGCCAAGGAA 43525 37 100.0 33 ..................................... TATGGAATCCTGGCAACCTACGGGCTGAGGAAT 43595 37 100.0 36 ..................................... AGAAGACGGGGAGGAGGAGAAATGCAAGCTAAAACG 43668 37 100.0 34 ..................................... CTGGATATTTATCCAAATGCCGATCCTCTATCGA 43739 37 100.0 33 ..................................... AGCTGCGCGACATCGCCAAGTATTACAAAATCC 43809 37 100.0 34 ..................................... CTAGCGATCGCCGCCGCCTTTACCCCTTCTAAAT 43880 37 100.0 36 ..................................... CCTATACAGGGTTCACAAACACTATCCAATCTAGGG 43953 37 100.0 42 ..................................... AAAAAATCCAAAAGGGCATATATCTCTTTGTATCGATTCGAT 44032 37 100.0 34 ..................................... AAGTAAGCCAATACTGAAGTTTTCGTGTTATATT 44103 37 100.0 35 ..................................... CAACCCAGAATCGGCTTATCATACACCAGAGATAA 44175 37 100.0 37 ..................................... TCCTTAATTGACTCTAAAGCACTATATACAATATCAA 44249 37 100.0 34 ..................................... GCAACATTCGTTTCTACAATAATATTGGTGTAGC 44320 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 34 37 99.8 35 ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AAGATAAACCAATCAAATATCCCCATATGTTCCGTGCTAGTGAGATTATGATTCTCACTAAAACTGATTTGTTACCTTATGTGCAGTTTGATGTGCAGCGTTGTCTAGAATATGTACAGCAAGTAAATCCCAATATGCAGGTTTTCCAAGTTTCTGCAACTACAGGTGTGGGATTAGATACTTGGTATCAATGGCTAACGCAGAAAGTAGCCAATTCTCCACAACCAGTAGTGATGTAAGCAGTAACTTTGCGTCAACCCATAGATGTTTTTCCAAACTTATGAGATTTTCTGCTGGAAAAGCTTATCCCCTATGGGTTTGAAGTGGTTTTGACTCGCTATGAGGTTGACGCAATCACCAAATCTCTTACAGTCACTGATTTCCACATATTTTTTAGGTACTACCTCTTGACAAAGCGATCGCTCAACAGCTACCTTAGTCACAAGTTCACGCAACCGCACCTTGAAAACCAAATATATCAAGCTTTCCATGCCTGAGCC # Right flank : CGTAGGAAAAAATAGATTTGTTGTACTCGCAACATTGAGTTCCAATTAATACAACGCGAATCCTTAGCCCCTAAAATCGAGAAATATTGCAACTCTTCATCAAAAAGCAATAACAAAGCAACAAAACTGTCATAAATGCTATCTAAAGTAATAATAAACATAGTTTCCTCGCTCAAGGCCATGCAAAACCAAGTACACGATGAATCTCAACCCTTAAATCCTAAAAACCAGAATCACGCACCTTGGAAAAAAGCGGCTGCATCTCTATCACTAGTACTGCTGGGATCTGGTATGACTTTAGCTGGTGGATATTTAGCAGGAAACCAGCAACAATTGGCACAAAAAGCATCTGACTTGGCCGTGAGCCGAGTAGATGCAGCACCGCCATTAGGAAATAACACAGACCCCAACTTTGTAACTCAAGTAGTACAGAAAGTTGGGCCGGCTGTTGTGCGTATTGAAGCGTCTCGGACTGTCACATCTCGATTACCAGCCGAATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA // Array 1 20672-22741 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKZT010000009.1 Trichormus variabilis 9RC NODE_9_length_83374_cov_16.5638, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 20672 37 100.0 35 ..................................... TCTCTGCGGCAAACAGTGCCTATGCTGCGGGCGGG 20744 37 100.0 38 ..................................... TATATATTTCTCTATCGCAGACAATCTTCTGTTAATGC 20819 37 100.0 40 ..................................... ATTCCTATCGTGATTGAACTGACTATCAACGTGAGGACTG 20896 37 100.0 36 ..................................... CCTAACTTACAACGCCCCACTAATTCACAATATTTG 20969 37 100.0 39 ..................................... GATAGAGATGATTGGTCGAGGGGAAATATCTCTGGCCAA 21045 37 100.0 44 ..................................... CACTTTAGACGAAACTAAAATATATAGCGATTGTACAAGTCAAG 21126 37 100.0 35 ..................................... CTAAAACAGTTCCCTCAAGAGTGTTCCCAATCAAT 21198 37 100.0 37 ..................................... TTAATTTTGATGTTCCTTGGACGTGGTTTTAATTCGG 21272 37 100.0 33 ..................................... CTTGCATTTTGATAAAAAAGATAAGTAGAGTAA 21342 37 100.0 35 ..................................... AGGAACAATTGTTCCTTAAGCCTATGCCCTCAGTT 21414 37 100.0 35 ..................................... GGCAGATAGTGGATGGGGCGGTAGATGTTCGGCAA 21486 37 100.0 33 ..................................... TACTCGCGATCGCTGCATCCTCAACGCCCAAAA 21556 37 100.0 35 ..................................... GTGGCTGGGACTAGAAGGGCTAGCCGAATCACTGG 21628 37 100.0 35 ..................................... TGGCAATACACGGGAGTAGATGATACTTCTGAGGA 21700 37 100.0 35 ..................................... ATCCAGTAGCAGTTCGCCCTCATCATTCCAGTAAG 21772 37 100.0 34 ..................................... CGGCGGCGCTGCGGCTGGTGGCGTACTCACAGAT 21843 37 100.0 36 ..................................... CTTGCCATTTTGACCTTCCATATTGAACACCCCAAT 21916 37 100.0 32 ..................................... ACCTCAGTTGCTCTGTTCTTGATTCCGCACAG 21985 37 100.0 34 ..................................... ATTTTAAAATCGGTGCAACCGGAGTTCGGCTCAA 22056 37 100.0 34 ..................................... GAGAGGCAGATCACCTTGTTCTATTAAGTGAGCG 22127 37 100.0 38 ..................................... AAAAGATGTCGATCAAATGAAGCGGATAAATAGCCACA 22202 37 100.0 37 ..................................... TAAGAAGGAGAGGTGATGTTAATTCACTTAGTGGAAC 22276 37 100.0 35 ..................................... AAAGACTTTTTAGCCGAGACGCAGGCAGGAAGAAG 22348 37 100.0 33 ..................................... AGCTTCAACGGCGGCGGGACTAGCTACATTCCC 22418 37 100.0 33 ..................................... AAAAGAAATTTAGCGACTTCTGCATTCTGTTCG 22488 37 100.0 35 ..................................... GCGTAAACTCTTCCGCCCTTAAATTGCGAGAAAAG 22560 37 100.0 34 ..................................... GGAAGCGTCGCTAAAACTCAAGCTATTTTAGAAA 22631 37 97.3 37 ....................................C GTGCTAGCCCTCTAATCTCTGGTATCCATCGCCCCAG 22705 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================================ ================== 29 37 99.8 36 GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAG # Left flank : AGAAGATAAACGCCGTACTAAAATTCACAAGGTTCTTAAATCTTACGGACAGTGGATGCAGTATTCCGTTTTTGAATGTGACCTGACACCTACTCAGTATGCTAAACTGCGATCGCGCCTAGCCAAACTCATCAAACCAGACCAAGACAGCATCCGTTTTTATCACCTCTGTGCTTGCTGTCAAGGAAAAGTTGAGCGCATCGGCGGCGAAATGCCAATAGACACTACCGTATTTTTTGCTTAACTCGTGCGTCAACCTATAGGTGTTGGGCAAACAAACTAAAATTTATCGTCCCAAACCCTTACCACTCATGCTTTTGAACCCTCCAACACCACAATTGAGGTTGACGCAAACACCCCAAACCTTCACCATAAATACTTTTGCACCAATTTTCTCCAACTCACTCTTGACAACTCAGCTTCCGAAAAGCTACCTTAATCTGAGATTGACGAAACAGAACCTTGAAAACCAAATACAGCAAGCTTTTCAGACCTGGACA # Right flank : CCTAATAAAATTGTTTTTTCTAGCAAGTCGCCTGAGGTTTATATTATAGGGTTTTTTAGTCTGCTGAAGTAAAAATCTCTGCGTACCTCTGCGCTTTACTCCGCGCCCCTCTGCGTTTCAAAATATTATCTGTACCTCACTTAACTGGAAATCGCTATAACACAAATCTCCATAGCATTTCCTAGCTGCTGAGGTACAAATTTATCCGCGTACCCTGCGGGAAGACTTCGTCAATATCTGTGTCCATCTGCGTTTAATTATTGTCATTTGTAATTCATTAGGATAAGAAAAACTATATTAAGGATTGAAACAATAGAGTTGGGATTTGCTCCGTAGGTTGCGTTAGTTTCTATTAATACAAATCCCTATCAAGGCTCTCAAATCTGTCAACAGCTATACCTTACTCTCTTTGTTCTCTTTCACATTATCTTGTTTGTCATCATTACCATTTTCTTGCTGTTTCTTCTCTTGCACAACCTGAGTAGCATAAACTTCTACAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //