Array 1 3183451-3179668 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009503.1 Methanosarcina sp. WWM596 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 3183450 37 100.0 37 ..................................... GTTTCTGCCGGAATCTGTTTTAATTTTGTTAAGGCTC 3183376 37 100.0 37 ..................................... ACCTCAAATAAGGTTTTAATTATCCATAGGTAGGTTA 3183302 37 100.0 35 ..................................... TCCATGATGCCCTCCGTGACTGTGATGTCCAAAGC 3183230 37 100.0 35 ..................................... TAAATTTCCTCCCCCTCTACATAATTTGGGGGAAC 3183158 37 100.0 35 ..................................... TTTATTGTTTTTTTCTTTCTTTGTAAGTTCTAATT 3183086 37 100.0 39 ..................................... TATGAAAGTGAGCCGCCCTTTTCTCTGAAAGTGGTTGCT 3183010 37 100.0 36 ..................................... TCCGGTTGCCTCAAAAACAGTTTTGGATGAAATTAC 3182937 37 100.0 35 ..................................... CAATCTCCATGTTTGACAGATCTACTGTTAGGAAA 3182865 37 100.0 36 ..................................... CGGCAGGCAGGACACGAGAAGAAGTCAGGGCATATG 3182792 37 100.0 36 ..................................... TTACAGTGCCCCCGCCACTCCCATCCACTTCCTCCC 3182719 37 100.0 36 ..................................... ACCCACCTATCGAGATCACAACAGGCATAAAACGCA 3182646 37 100.0 36 ..................................... ACAGTTTAAGCTTCTCAGTTACCGGTTCTTCGTCAC 3182573 37 100.0 39 ..................................... TCCAACCGGGGAGTATAATGAATTAGCTGAGATCTTGTT 3182497 37 100.0 35 ..................................... TATACACATAATGTCCATTCGGATCTACCTCAAAG 3182425 37 100.0 34 ..................................... TTGCCGTGGAAACAGTGCGCTACGAAGCAAAGGT 3182354 37 100.0 36 ..................................... ATGATGCTCTTGATAGGGTATTAGAAGATTATGAGT 3182281 37 100.0 34 ..................................... TTATCTCGGAATTTTGGAAGGCTTTTAAAACGGC 3182210 37 100.0 39 ..................................... CCAGGTCGATGACTGTAAACCCTTTTGAGAGGTCTATGT 3182134 37 100.0 36 ..................................... AAATCGCTATCGGCTAAAAGCTGCTATGCGTTTTGT 3182061 37 100.0 34 ..................................... TTATCTCGGAATTTTGGAAGGCTTTTAAAACGGC 3181990 37 100.0 39 ..................................... CCAGGTCGATGACTGTAAACCCTTTTGAGAGGTCTATGT 3181914 37 100.0 36 ..................................... AAATCGCTATCGGCTAAAAGCTGCTATGCGTTTTGT 3181841 37 100.0 36 ..................................... TGTTCTCTCCGGTGCTCCCCGTGGCTTCGTAATTAT 3181768 37 100.0 37 ..................................... CATATGTGCATCCGACCGTTAATTCGGAGTACATGAC 3181694 37 100.0 37 ..................................... CATATGTGCATCCGACCGTTAATTCGGAGTACATGAC 3181620 37 100.0 35 ..................................... GTAATCGATCCCGGCGTTATGACTCTGGTGAAGTA 3181548 37 100.0 37 ..................................... GCAACTGCCTGTTTAAGTTCCTCATCTGCATCTTTCC 3181474 37 100.0 35 ..................................... TACATTGAATTTCATCCATAATTCCGTTTAGTTCC 3181402 37 100.0 35 ..................................... TGTATTTGTATTCGCCTTCTGATTTTTTCTTTGTA 3181330 37 100.0 35 ..................................... TTTTTTCATACAGAATTATCTCGGCAGATTTGATT 3181258 37 100.0 37 ..................................... CAAAGGTGGTTTTTGAAGACGGGGCAGTCCTGAAACT 3181184 37 100.0 35 ..................................... CCCACGCATCTCGATCAGTGGCGATATAATGCCCA 3181112 37 100.0 35 ..................................... GTAAGCACCTCAGCCCCTCTAATCTAGACATAAAG 3181040 37 100.0 36 ..................................... TGAATCCCTGGACATCCCCAGCTTTGTTATAAAACA 3180967 37 100.0 37 ..................................... TAAAAATAATTAATAATCATCATAAAAAGGCGTAATA 3180893 37 100.0 38 ..................................... AACGGTCCTTCCTTCGCAGGAGATGACGGAAGAAGTCT 3180818 37 100.0 35 ..................................... GAACTCATTGAATCTGCAAAGAAGACAAAAGAGGA 3180746 37 100.0 34 ..................................... ATAAATACGTTGACCAGGAAACACATGAAACTGT 3180675 37 100.0 37 ..................................... TTAAATGCATAATGACCTATCATATCACAGTCTTCAG 3180601 37 100.0 37 ..................................... ATCCTCCACTTTCTCATAAGTTGCCCGGAAAATATCT 3180527 37 100.0 35 ..................................... ATTATAGAGTTGTAAGTAATGATATTCTTCTGATC 3180455 37 100.0 34 ..................................... TAAATATCCCCGTCGTACTTGTTAAGCGCATCTT 3180384 37 100.0 36 ..................................... GCGATCGACTCTAATGCTAAAACTCTGCGCTCTTCG 3180311 37 100.0 36 ..................................... CAGTATTTCTCTGTGAGATCATTTAAAGACGTTCTT 3180238 37 100.0 37 ..................................... TACACAAGACCAATAATTACGAATGTTGAAACTAGGC 3180164 37 100.0 36 ..................................... CATGTATGGTGTACTCAGTGCAAATGACGAAAATAT 3180091 37 100.0 37 ..................................... CATGCCCCGAATGCGGGGCGCGCTATTCGGTCAAATT 3180017 37 100.0 38 ..................................... CTATAGTTTCGTTTACATACTATACCCTTATACTCGAA 3179942 37 100.0 37 ..................................... TCTCGTCGATCTTGTTTTCTATTCGTGCCATACGACA 3179868 37 97.3 48 ................................A.... AAGGATTGAAACTCTGAGTTTTTGCCTCAGTGAGTCCAGTTTCTTTTT CACC [3179834] 3179779 37 100.0 38 ..................................... AAAGTGCTGGACGGATTTCATTATTATAGAATTCTTTA 3179704 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================ ================== 52 37 99.9 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AATAATTTCAACCGTAAGTTTATTCATCATAGCACCTGTTGTCAAGTTTTTCGACCTCGACATAAATCAAATCCCAACAAAATATTTGATATCATTATTATCCGGAATTGTTGTCTCTATAGAAGCACATATAATTGCGGATATGATATACACCAAAGTAAAAATAAAATCCACAAAAATAAAAAAGAAACTGAAAAATATTCACACCAGCAGACCGTAAAAATAAAATAAATCAGCTGTCAATTCATTTTCAATGAATTATCTTCCACTGATCATTATGTACTCTAATGTAACAGGGAAATCAGCGGAAAAAGTCAAGAAATATATATGAAAACATCTTAACTCCTAGTAAGTACATAGATTGCTTTCCCTGAATATCTGCGTTTGAGGAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTCAAGTCCCAAAAAAGAGGTGATTTTAAGCCTTTTCTGGCGTAATAACGGAAATTTTTGCCCT # Right flank : ATTTTTCAGTAACGGGCTCTTCATCAAATATAAGAATTCGTGAGAAAAAGCGGTTCGGAAAATATTCGAAAAAAGGACTGCTCCAGGGTGGAATAATTTCACCTCTTCTTGTAAACTTCTACCTGGACCAGTTCGACAACCATTGGGTTGAAATCGGGCTCAAGAATGTTGAATGGGAGTCAGTTGAGCACCTTGTGCGTTTTGCAGATGATTTTGTAGTCCTTTCAAAGGAATGGATCGATCCTGACAGGGTTGGGGCTTTTCTGGTTGAACTGAGCCTTGAACTGAACAAAGAAAAGACATATTTCGGGACTGCTGGGAATGGGTTTGAGTTCGTGGGCTTTTATTTTCAGGAAATTGTGGAGGAAAACGGGTCAGGGAGTATTATAAAGGTCATACCTACCGAGGGGTCCATTGAAAAGGTTATTGAGAGTATAAAGAGTGGATATGGCATAAATAAAGAGACTTAAGACGACAAAAATAAAATTTAGTCTCTGAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 3196903-3192212 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009503.1 Methanosarcina sp. WWM596 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 3196902 30 100.0 36 .............................. CTTATGATGTTCTGTATGCGTGCATCTGATACGTTT 3196836 30 100.0 37 .............................. CTACTTTTATTCTACAATTTTCAACTGTAATACCCTC 3196769 30 100.0 38 .............................. ATGGAATTCGGGGTTTTATATTCGAGGATATCTTCCTC 3196701 30 100.0 35 .............................. ACAGACGACGGAATGATTAGGATAATTGTAGCCGA 3196636 30 100.0 39 .............................. CTAGCATTCTTGATCTCCTCGTACTCACCAGTAAGATAA 3196567 30 100.0 36 .............................. CAGTGTGGGCAGGTTGGACGGTTAGATGCTTCCCCT 3196501 30 100.0 40 .............................. TTTCATCTCGAACGAAACAGATCTCATCAAGGTATTGACA 3196431 30 100.0 36 .............................. ATCCTACCTCATCACGATGTTCTTTCCAAGCAGGCA 3196365 30 100.0 36 .............................. AAAAGGATACGAAACCATACCTCAACGCTTATGCGT 3196299 30 100.0 35 .............................. ATAGTTCCACTTGTAACTGTACCATTACCAATTAG 3196234 30 100.0 36 .............................. ATGTCCATGGCAACCTTGAGAGAAGATGACAAACTC 3196168 30 100.0 38 .............................. TTTCTTTCCCTCCATTATTTTGTAAGACTGATTACAGC 3196100 30 100.0 37 .............................. AGCTACACTGCAAAAACGTTATCTACCGCGATATATA 3196033 30 100.0 39 .............................. CCGTTCCCCTGTTTTAGTTTGAGCCGTGAGAATCCAATC 3195964 30 100.0 37 .............................. TTTCTTTCCCTCCATTATTTTGTAAGACTGATTACAA 3195897 30 100.0 38 .............................. ATTAGGAGAAGGAATGTCAGAACTGGAAATGTAGCTGA 3195829 30 100.0 38 .............................. TTACAACAGGACCGAGTACTATAAGAAGTCCGCCTATA 3195761 30 100.0 37 .............................. TTGTTTAATTGATCTGTTTACAAGGTCGTCATTCTGT 3195694 30 100.0 36 .............................. GTTTAATTGGATCGGTACGATATACGCAAAAACACA 3195628 30 100.0 37 .............................. TCGTATGTCCCAGGTTCGAACACGTCGTAAGTGTTGG 3195561 30 100.0 36 .............................. ATAATGCCTTTCACGCGTTCTATCCTATCGAGCTGT 3195495 30 100.0 38 .............................. AATATTAAATTATATAATACTGTCAATATAGTATTAAT 3195427 30 100.0 36 .............................. ATGTCGTCATATTCAAGTTCAAGAACACTTGAGGAT 3195361 30 100.0 35 .............................. GGACTTATATAGTTTGAGTATGGCGGTAATACAAT 3195296 30 100.0 35 .............................. TACAATGTTTTCATAATAAAAGCAAGTGCAAGCAT 3195231 30 100.0 36 .............................. GCTGGTCTTCAGTGACACAGTTGTCACGTGAACTGT 3195165 30 100.0 37 .............................. CTATTTCCTTTATAGCCTCTAACCGGGTTGTTGAGGG 3195098 30 100.0 36 .............................. TCAACTAAAGCGGTTTTTCTGTAAAGTGCCATGTTG 3195032 30 100.0 36 .............................. TTTTGTGATAATCATTGGGTTACCTGTTTGCAACAC 3194966 30 100.0 35 .............................. GTTCCGATCCCGTTTTGATTCTCGAAAATTCCTAT 3194901 30 100.0 37 .............................. AACGAAGAATTTTTGACTAAGCGTTTCATACTCCCAA 3194834 30 100.0 37 .............................. ATCTCAGTAAGAGATATGTTCCCGACTGCTCGGTCAA 3194767 30 100.0 38 .............................. ATTGTGTTTTCCGGAACCATGGCTCATGTGCATTAAAA 3194699 30 100.0 36 .............................. ATTAACAAAATAAAATTTAAACAGGGAGAGATAGCT 3194633 30 100.0 40 .............................. GTAATTATTGCGGTACCCACGCAGTGACGAATTGAAACAT 3194563 30 100.0 38 .............................. TTTGATCATTCGACATTAAGGACTTGACGTCGTCAAGG 3194495 30 100.0 36 .............................. AGGAACCCACGGTTGACAGACGCCGCCTTAACGTAA 3194429 30 100.0 36 .............................. TAACATGAGCTATACAGAAAACACGATAACGGGCTT 3194363 30 100.0 35 .............................. TTCATGAGAAGAGAATTAAGAGTGTTGCGTACAGA 3194298 30 100.0 36 .............................. TAGACATGGGGACAATGATTTGCTGTCTGGGATCAG 3194232 30 100.0 35 .............................. TGAATATACCCCTTCATTTTAATGGTATTGCCAAT 3194167 30 100.0 39 .............................. AAGGGTACCGTCCCTTAAAAAGGCTATTCGGTTCGTGAA 3194098 30 100.0 37 .............................. GTGCGTTCCCTTTGTCAATTGCCTCGATCTCATCAGA 3194031 30 100.0 38 .............................. TTATGGGAATGGGGGGGTAAAATCCGCCAGCAATCCAC 3193963 30 100.0 35 .............................. ACGGGAGTCAGTTGTTTGCAGGTTGTGCAGATTGT 3193898 30 100.0 34 .............................. GGTAGTTGATAGTTTGGTTTTTAAAGTGGTAACT 3193834 30 100.0 33 .............................. GAAAGAAGGTTGAGAGACTCTATCACTTTTTTA 3193771 30 100.0 38 .............................. GGAGATCGTTTGCGAAATCGCCGCCCTGCTGATATCCT 3193703 30 100.0 36 .............................. ATGGGAGCTTGGCCCCTCTAAAAAAAGTGTAGAAGG 3193637 30 100.0 36 .............................. TACCTCATGGAACATATTTTAATTTGAAGTAATCTA 3193571 30 100.0 38 .............................. ACAGGTATACCTCCTGAGATACAGTCACTTCCCAGAGC 3193503 30 100.0 36 .............................. TTTACAACATCTTCTACCCCATCTATGACCATTGCA 3193437 30 100.0 38 .............................. ATTTAATGGAGGAACTGGACAATCTGATTCATGGAATT 3193369 30 100.0 36 .............................. CACATTGGATTGAGTACCATAGAATTGTTAATGCAC 3193303 30 100.0 37 .............................. CTTCGCACCTTCAAAAATAACCATTCTCACTTTTTCA 3193236 30 100.0 37 .............................. AAGAGTATAATGCAGAAATATGGTATAAGAGGTAGTG 3193169 30 100.0 36 .............................. ACCGTAGCTCATTATCGGCTTCTGTCTGCTGATGGT 3193103 30 100.0 36 .............................. AAAGTACAAGTCCTTCAAGCATACTGTGATGCAAAT 3193037 30 100.0 37 .............................. ACAAAAGCATCTACGGACATATTTGAAAAATACGGGC 3192970 30 100.0 33 .............................. GTATATATGTTGCATTGATGTCTGTAATTTCAG 3192907 30 100.0 34 .............................. CTCGAGAAGCTTGACCCTGCGAATGATGTTTCAT 3192843 30 100.0 36 .............................. TAAATTAGGCTGTTTGAAGCATACAAATATTTCCTG 3192777 30 100.0 35 .............................. CCTAAAAACTTTTGGATTCATTAGTGATTTTTCTT 3192712 30 100.0 38 .............................. ACGTCCACGTCCTTTTTTGCGTCCAGCTTTGGATGAAA 3192644 30 100.0 35 .............................. TCTGTTCTTTTTTAGTTGTCTGACTTGCTAACGGA 3192579 30 100.0 37 .............................. AGTTTTTGGCATATAAGTATGCAAATTCCAAAAGCAA 3192512 30 100.0 41 .............................. AGATAATTGATTCGATCCATTCCTCAAACTCCTTTCCCCTC 3192441 30 100.0 37 .............................. GTCTTTTGAGAAGTCTATGTTTGTATCTTCGTTAAGG 3192374 30 100.0 37 .............................. TCAAAATACATACCTTTTACAAGCATCAATCCGAGTT 3192307 30 100.0 36 .............................. GTAACACGTCCCCCTAATCTCGTTGGGGGAAACTTG 3192241 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 71 30 100.0 37 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : ACATGAACTGGGTTCAAAATAGTGTTTTTGAAGGTGAACTCACAAAAGCCGAATTCCTGAAAGTTAAGTCAAGGCTTAAAGAACTCATAGAAATAAACCATGACCACATTATCTTCTACAGCTCCAGAGATAAAAAATACCTTGGAATAGAAAATCTCGGAACTCCAAAAGCAGATACAAACAACATAATTTGATCAGCCATATCTGCAAATTTCACTACTTAAGCCTTCATACAAGAGCCAACACATTATATATATATTTATTAAAGATCCCCGTCAGAAGATTCTGCTTATCTTCTTTTTTCGTGGATCTTTATAAATGAACCACCGAAAGAACGATCCCCGAAACTTCCTCTTGAATATTCATTCAGAAAAGGATACTTTTATATTGTACAACACCAAATACCATTGTCTAAAAACAACATCAAACTCCGAATTATCCAACTCTTATTTGAAAAGACTCCGCATCCAATTTACCTAAATTCGGGGAAAATTTTCTTG # Right flank : ACGAGGGGGAAATACTTATATAAATATTTTTTCTTTAAATTAGGAGTAGAATAAAGTATTCAAAAAATAAATTGAAAAGATATATACTATTAAGAGAAATGTAATAGCAATCATTTCTTTAAGGGATTGAAAATTTAGAGTTCGCAATTTTATTAAAAAATAAGACCTTTGAGGGATCGTTTATTTTTTGCATTTTTTTATAATAAGTTACTTAAAATTCCATTTAGGGTTCGTAATTAACTGCGAAAAATTTATCTACGTTAAGATATATCTTAAGATACAATTAATTCACAAAAACGGGAAAATATAATTACAAAATTAAATGAATGGTTAAGGAACAAGTTATGGATCAAACAAATCCTGTTGAATCAACATTATTATTTTTAAAATTATTGGACATTCTACAAGAAAAAGTCCATCCTCAGAATGGGAAAAAATAAAGATATTGATACTACAAAAATAGTTATCTGGAGGGTAAATATTGATATATCAATATACAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 3 3526414-3529797 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009503.1 Methanosarcina sp. WWM596 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3526414 29 100.0 32 ............................. CGCCAGCATGTAAAAAACGTTTCCAATCATTG 3526475 29 100.0 32 ............................. ATGGGATGAAAAAAAAGGAGAATGGACGTTAA 3526536 29 100.0 32 ............................. CTGCCTGTGTAACTTGACTCACACTTATTTTT 3526597 29 100.0 32 ............................. GTCTCCAGATCCTGGACCCTGGAACTGCTTCG 3526658 29 100.0 32 ............................. CCGGGTATTTCCTGCCATGTCCTTAACTTCTT 3526719 29 100.0 32 ............................. TAAGAGATTGAATTCAATTACCCCGTCTTTGC 3526780 29 100.0 32 ............................. ATTATTATAGATGTTATCCGGAGCTGTCAAAC 3526841 29 100.0 32 ............................. TTCTTTTTGAATACAACGACTCGCAAACATGG 3526902 29 100.0 32 ............................. TTGTGCTTATACCTTTGCCTGAACAATTCGTT 3526963 29 100.0 32 ............................. CCGAAATTAAAACCCATACCTGTAATTCCCCC 3527024 29 100.0 32 ............................. TCTCAAAAATCCAGATAATACTCTGGTAGTTA 3527085 29 100.0 32 ............................. ACGTGCCCCTATGTGAAACTCTCCGGTCATAA 3527146 29 100.0 32 ............................. AACTATTATAGAGTTCCCCAGGGTTCCTACCC 3527207 29 100.0 32 ............................. TCTCTCCCTTTTCCTCTGTCATATACTGTTCA 3527268 29 100.0 32 ............................. TTGAAAAAGTAGTCAAACAAAAATACTATTCC 3527329 29 100.0 32 ............................. GTTTCACGCTTGCAAATAATGATTTACCCCCA 3527390 29 100.0 32 ............................. AAGCCGCAGCAAAGAGGGTAGACTCATTTATT 3527451 29 100.0 32 ............................. TCCCTGCGGCGACTCCTCCCAAATTACTTTAG 3527512 29 100.0 32 ............................. ATTATTGAGGTGTGTTTAATGCCGTGTCCGTA 3527573 29 100.0 32 ............................. CAATGGATGATACACAGATTGTAGTGCGAGAA 3527634 29 100.0 32 ............................. TGCTAGCACATGGATACAAACGACAATGCAAA 3527695 29 100.0 32 ............................. ACTTCTCAGATAGAGCCGTAGACGAGCTTATT 3527756 29 100.0 32 ............................. ATTGGCCTGCTATTGTCAGGAAATATGAATTA 3527817 29 100.0 32 ............................. GATTACAGGGCAAATTATGGGGGGTCTGGACT 3527878 29 100.0 32 ............................. TCGGAATAATCCGCAATTCCGGTTATTGCTTC 3527939 29 100.0 32 ............................. ATTATTTCCGCAAATGTCGAAATTACAGAAAC 3528000 29 100.0 32 ............................. AAGGGTTATTAAAAGAAATGGATAATCGCGGT 3528061 29 100.0 32 ............................. TTGTATATCTCACAGTGAAACCGGACGAGAAA 3528122 29 100.0 32 ............................. GATATCGGGTTTCTGTATTTTCCCCTTGTTGG 3528183 29 100.0 32 ............................. GAACGCACCTCATTGTTACGGGCTGGACTTCG 3528244 29 100.0 32 ............................. ACACACAGGACCGCCTACATTCGTTTTTAAGA 3528305 29 100.0 32 ............................. TCAGGGTATATGTAAAAAACGTCTTTGAAGGA 3528366 29 100.0 32 ............................. CAAGTAGGACGGCAAAACTTTCTGAAGCCGCC 3528427 29 100.0 32 ............................. GATTACGATTTCCGTTCCTGATGAACTAAAAG 3528488 29 100.0 32 ............................. GGCCAACGATAGCAGCTAATAGGATTTATGAT 3528549 29 100.0 32 ............................. GACATCCGAGAAGGGGCAGTGACAGACTATGA 3528610 29 100.0 32 ............................. GAGGGATTACAACGTTAGTACCTGACCATCTG 3528671 29 100.0 32 ............................. TTGCTTATCAGAACCACGCTGTCGCCACCGTG 3528732 29 100.0 32 ............................. GTCACATAGACCTTCATAATTGTCTTCCCCCC 3528793 29 100.0 32 ............................. AATGACGTTGAAAAAACAAATGACGTTGAAAA 3528854 29 100.0 32 ............................. AATTTTCACTTCGAGTACTGTAAATGATGGAA 3528915 29 100.0 32 ............................. GCTTAACAACCACTGAGAAAGCTGAAATCGCC 3528976 29 100.0 32 ............................. TTGAATTTTGGCTTTAATTGTCAAAGAGTGCC 3529037 29 100.0 32 ............................. GTTCTCAAATTTGTTTCATTGGATTCGATGAG 3529098 29 100.0 32 ............................. CCGTGGTTTTTTACAACTGAAATGTAAGGGGA 3529159 29 100.0 32 ............................. ATCGAATAACCCATTTTTGAAATTAATATACC 3529220 29 96.6 32 ............T................ GCAGCCCAGGAAGCAGCCGCTAAATTAGCCGC 3529281 29 100.0 32 ............................. CCGGTTACTAAAACGCCACTCCTTGATCTGAT 3529342 29 100.0 32 ............................. CTTAACGTCTCTGTATCCAACTGCTTTAGTGC 3529403 29 100.0 32 ............................. TAATTGGAGCATATTGAATATAGAAAGTGAGA 3529464 29 96.6 32 ............................T CAGAGGAAGATACTGCAACTGGAAAATCGAAC 3529525 29 100.0 32 ............................. GTCGAGGTTGACACAAAACAGCAGTTAGTAAT 3529586 29 100.0 32 ............................. ACTGGATGAGAGAAAAAGAGGATATCGCAATT 3529647 29 100.0 32 ............................. TATTTCATCAACCGTATGCCCACACACAAAAA 3529708 29 100.0 32 ............................. TGCCGTCTCTTCAGGTCTCCGCTGAAAAAACC 3529769 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 56 29 99.9 32 GAGTTCCCCACACGCGTGGGGATGAACCG # Left flank : TGCCGGAGGTCTCTCCATTCCTGAAGAGCCTCCAGAATCCCTTCCTCCCGCAATTCCAAATGAAAGGGGACTTAATGATGCTGGTCATCGTCCTTGAAAACACAACACCCAGACTGAGAGGAAGACTGACTCTCTGGCTTCTGGAAATTAGGGCCGGAGTATATGTAGGAGAGTATTCGGTCAAAGTAAGAGATATGATATGGAAGAATGTAGAAACCGAATTCAATGACGGAAATATTCAAGGAAGCGCGATTATGATCTGGTCAGCAAGAAATGAAATTGGATTTGATTTCAAAGTCCTGGGTGAAAATCGCAGAATCCCAAGAGAAATGGATGGAATAAAATTAATATCCTTTATGCCCGAAACTAAAGTAGAAGAATAAATTAACCGGAGACATCATGTTTTTTAAAGATCACAGATTTTATATTATAGCTAATATATTAAAATTTTTATACGTCAACGGAAAATTTATTCCTAGTTCTAATATAAAAGATAAACA # Right flank : GTTCAGCGCTCAACTTTTCATTATATCCCACTTTCCGCAGTATTTTTCGTATATTCATTATTTTTCTTGCTATCGATTTTTGTCCTAACGTGAATTTATCGGATTTCTATGCAGGAGTTAAAAATGACTATACGGTATGTTCAGAGACCAAAAAACTTAATATTCAATTTTTATTCAAATTTCAGTTTGGGTATATTAATTGAGAATTTTTGAAAAACGCTATCGTAAAAAATATTGATTTTCAAAAAAATACTGCGGAATGTAGGTTATATAGTTGTGAGTTCACAATTCTTTTTCGTAGTATAGGTATCCTTCTTCCTCTTTTACGAAAGTAAAACCGTTCTTGAGATACATGCCTATCGCTTTTTGAAGGGTTGAATCGGTTTTAAGCACGGCACCTGAACAGTTTTTTCCGGCAAAATCCAGAGCTGCCTGAAAAAGTTTCTCTCCGTTACCTTTGCCCCTGAAGCCCTTTTTTAGGTAGATGCGCCTGATTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACAAGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //