Array 1 129520-126559 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBU010000009.1 Salmonella enterica strain LB31 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 129519 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 129458 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 129397 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 129336 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 129275 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 129214 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 129153 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 129092 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 129031 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 128970 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 128909 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 128848 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 128787 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 128726 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 128665 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 128604 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 128543 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 128482 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 128421 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 128360 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 128299 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 128238 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 128176 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 128115 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 128054 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 127993 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 127932 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 127871 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 127810 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 127749 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 127688 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 127627 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 127566 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 127505 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 127444 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 127383 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 127322 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 127260 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 127199 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 127138 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 127077 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 127016 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 126955 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 126894 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 126833 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 126772 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 126710 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 126649 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 126588 29 96.6 0 ............T................ | A [126561] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 147152-145779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBU010000009.1 Salmonella enterica strain LB31 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 147151 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 147090 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 147029 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 146968 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 146907 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 146846 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 146784 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 146723 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 146662 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 146601 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 146540 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 146479 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 146418 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 146356 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 146295 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 146234 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 146172 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 146111 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 146050 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 145989 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 145928 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 145867 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 145806 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //