Array 1 1-205 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOON01000173.1 Dickeya sp. DW 0440 DXXDW0440_contig173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 27 96.4 32 -........................... AGCGTCTGGCTGACCGACGGCTCTACCGTGAA 60 28 100.0 30 ............................ TGGTATCGTCCAGCACCACGTCCGCCGGGA 118 28 100.0 32 ............................ CATTCCCAGCCGGTTCGGAACGAATGTCTGAA 178 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : | # Right flank : AC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 480160-480371 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001983.1 Dickeya sp. DW 0440 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 480160 29 100.0 32 ............................. CTCGATTGCAGTTTGTACCGCTTCAATAGCGC 480221 29 100.0 33 ............................. GGGTACGCTATCGGTTTCAACTGGCACGATGTC 480283 29 100.0 32 ............................. TCACGTTATGGCCAGACGTTTGATGCCATTTA 480344 28 86.2 0 .....................-....AAA | ========== ====== ====== ====== ============================= ================================= ================== 4 29 96.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGTAGAATTTTCCAGTCTTTAAAATACCTTATAAAACAGGTATCTACTTTTAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTAGCCGGATGGATTTCTGGTAAAACGCGGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTTACGGAAGGGTAATGTCCAGCAGTTCAACGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCCTGCCGGGCTTTATGTCGGATTTGGTTCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCATCGTCTACATCGGCCTGGATGCGTTGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTTGGTCGTGACGATATGCGCCTCGTCTATCGTGTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGGGTTAGTACCGCCGTTGGGGGCAGAAAA # Right flank : AGAGAAACCCGATGACGGGCGGTACGCGTCATCGGGTTTTTGCTTATGGAACTGCGTTACGCAGGCTGACGATTAAAACGAGTGCCAGTCATCTTCGCTGTTTGCGGTTTTACGCGATGAGGCGGCCGGTTTTAACGCCAGTGTTTTGGTGGCGGAGGCCGGTTTTACCGGGGTACTGGCAAGCATTGGCCGGTTGCCGGAGGCTCGATAAGCGCCGTGCCCGGCTTCTTCCAGATGGAACAGGCTAACCACCTGTTTTAACTGCTCGGCCTGTTGCTGCAAGGCTTGGGTGGCATCGGTGCCTTCTCGCACCAGCGAGGCGTTTTGCAGCGTGGTTTGTTCCATTTTATTAATCGCCTGGTTGACCTGCTCGATACCCAGTGACTGTTCCTGACTGGCAACGCTGATTTCACCGACCAGTTCGCTGACTTTGCGCACGCCATCGACAATGCCCTGAATGGAGACCCCGGCTTTTTCCACCAGCCGGTTACCGGCATCCA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3466867-3466372 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001983.1 Dickeya sp. DW 0440 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3466866 28 100.0 33 ............................ GTTGAGGCTGAACGCCAAGACGACACGCTGGAT 3466805 28 100.0 32 ............................ TATCCCGGCACCGATGCTCATTAATAGCGGTT 3466745 28 100.0 32 ............................ TGACTGTTAAAGTTTTTCGCCATCTGCGTGAT 3466685 28 100.0 32 ............................ TGCGGGGTAGGCTGATATGGCAGATAAAAAAC 3466625 28 100.0 32 ............................ TACGCATTCATCAGCAGCCAGGCCACTGGCGC 3466565 28 100.0 32 ............................ GGTTCGTGCCCGGACACCGCTGGAGCCGATTC 3466505 28 96.4 32 ....................T....... GGTGCCGCAAATGCCTGACATCCGGTAATGCG 3466445 28 92.9 18 ...........A.T.............. AGTCAATGATTAGCTGCG Deletion [3466400] 3466399 28 67.9 0 TGATG......AT.....C.......T. | ========== ====== ====== ====== ============================ ================================= ================== 9 28 95.2 30 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CCGGGCGCTGGGGCAGCGTGCGACCGGCGATATTGGCGTGAGCTTTCCGGATGCGGGCAAAACGCTGGGGGAACGGCTGCGGTTGCACGGCAGCGTGCAGGCACTGACGGCACTGGAACAAACTGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGACGCACTGCCGGTACCAGCGGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAACGCCTGCGCCGCCGGGCGGTGAGTAAAGGCCGAATGACTGCGGATGAAGCCGATGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATTTGCCGCTGCGTAGCCTTTCCAGCGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGAAAAGTTCCAACGCAGTTCACGGCCGATTCAAATA # Right flank : CGCCCTGCCAAGCCATAGCGGGCACGGCCGGACAGGCAGGCGCAGGGGCGGTGTATGGTGGGGTTGTGTTATAACAAGCAGGGCGAGGCGGTGTGCGTCTCGCCCTGACTGGCGGTGGCGTTAGCCGTTATCTGTTGCCAGTGCGGAGGTTGCCTGTTTGCGCTGTTTGATGGCGTAACCCGCCCCCAGTGCCAGCAGCCAGAAGGGGATGAGCCAGACGGAGATTTGAATGCCCGGCGTCATCGCCATAATGACCAGAATCCCGGCCAGAAACAGCAGGCAGATAAGGTTGGTGAGCGGGTAGCCGAGGCTTTTAAAGCGCGTTTCCTGCCCGGTGCGCTGTTTGGCCTGGCGGAATTTCAAATGAGTGATACTGATCATCGCCCAGTTAATCACCAGCGCGGAAACCACCAGCGCCATCAGCAATTCGAAGGCCTTGCCCGGCATCAGGTAATTAATCAGTACGCACAGTGCGGTAGCCAGCGCAGAAACCCCAAGCG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3475361-3475568 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001983.1 Dickeya sp. DW 0440 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3475361 28 100.0 32 ............................ TCAACTGGTCAATCAACGTTGACTGGCTGGAG 3475421 28 100.0 32 ............................ AGCGCTGACGCGGACGGCGGTAACAAGCTGCT 3475481 28 100.0 32 ............................ ACTGACGTCATCGCCGTAATCGTTGCCGTTTT 3475541 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTGACCGAAGTACCGGTGCCGAGCATCACCACGCTGGTATTGGCAATCGGGATATTCCAGTACAACGACTGATTCCCCTCTTCGGTGACATATTCCACCCGCCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTGGTGGTGATAAAACAACCCTATCCGCGTAATAAAACGCAGACTAATAATTCATTGGAAAACACGTAATACACTGGAAAGTAACGAGAATTAACCTATCACAACCCAAGCAGGAAAGTGAATGACGCCAAAAAGACTTTCCTTATTTTCATACCCTTTTTTTCCGCTGTCTTTTTCGATATTGAAAAATCAACAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGCCAATTGCGGGCAGAAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGACAACCGTTTTTACTGTTTGTCGAGCACGGCCCGCTGCAGGACACACCGGTCGCCGGTGTGTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAGGTTTTTCCAGAAAAACGGCGGTTTTTCTTTAACAATCAGGAAATAAGCGATTATTCGCTACAGTTCACTGCCGCACAGGCAGCTTAGAAACGTCGACGCATCTCGATGCCCAGCAACAAAAAGTTCACTGCCGCACAGGCAGCTTAGAAATGCTGCGTGCCGGAATTAATGTCGTGGATTATGTTCACTGCCGCACAGGCAGCTTAGAAAACCAGCGGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3475911-3476479 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001983.1 Dickeya sp. DW 0440 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3475911 28 100.0 32 ............................ CGTCGACGCATCTCGATGCCCAGCAACAAAAA 3475971 28 100.0 32 ............................ TGCTGCGTGCCGGAATTAATGTCGTGGATTAT 3476031 28 100.0 32 ............................ ACCAGCGGCCACTCCTCCGGCCTCCTGATGCC 3476091 28 100.0 32 ............................ ACACTGCAAAGCCACGCCAAATATCAGAGTGT 3476151 28 100.0 33 ............................ GGAGTTAGCTGTCGGCATTCAGTCGCCCCCGAA 3476212 28 100.0 32 ............................ GAGCACCGGATGCAGGTGATGCAGCAATTTGG 3476272 28 100.0 32 ............................ ACCAGTTTTCCCGCAGACTGTGGCAGGTCGAG 3476332 28 100.0 32 ............................ TTCGCCTCAAAATAACGGATCGCCTCCTCGGG 3476392 28 100.0 32 ............................ GCACGTTGCCATCACGCCTGTATTGCCGTCGG 3476452 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTGGCTGGAGGTTCACTGCCGAGTAGGCAGCTTAGAAAAGCGCTGACGCGGACGGCGGTAACAAGCTGCTGTTCACTGCCGAGTAGGCAGCTTAGAAAACTGACGTCATCGCCGTAATCGTTGCCGTTTTGTTCACTGCCGAGTAGGCAGCTTAGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGACAACCGTTTTTACTGTTTGTCGAGCACGGCCCGCTGCAGGACACACCGGTCGCCGGTGTGTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAGGTTTTTCCAGAAAAACGGCGGTTTTTCTTTAACAATCAGGAAATAAGCGATTATTCGCTACA # Right flank : AGTGATGCGTCACCATCAGCTGAAGGCGCACAAGTTCACTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTTTTCACGGACGCGTTCAATGAACTCAGAGACGATTTTGTTGACGCCATCTACATCGCCGTTATATTTACCCTGCAAGTACTGATTAATAACGGCAACGCTCTTACCGATTGCGCGCGCCACTTGAGACTGTGTCAATCCCTTGCGTTCCATTAATTCAGATAGTTGCGTTCTCATAGTCATGATGTGCTCCTGTTAGCAATCAATAGCGGTTTGATGGCAGTCAAACCGCGTTGTTTTTGCGGCGCAAATACTCGTCACGCTCAGATTCGAATAAAAACAGCGGTTCCCGATCATCATTTAGTTGAGCCATATCCCCCTGTAACAACGCGCCGAAATCTGGCGTGTGCTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3480055-3480681 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001983.1 Dickeya sp. DW 0440 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3480055 28 100.0 32 ............................ TTTACCATGACGATACACCTTACTCAGCACTC 3480115 28 100.0 32 ............................ GCGATAGCGGCGAATGGGTCATCATTCCGCCC 3480175 28 100.0 31 ............................ GATTAACCGCTAAAATATCGCAATGAATCCC 3480234 28 100.0 32 ............................ TTCAGCTCGCGAGGTCAGTGAGTTCAAATCAG 3480294 28 100.0 32 ............................ GACAAATTCAATCGCCGCTTGTGCTGCTGCGG 3480354 28 100.0 32 ............................ AATAGACGTGTGGACGAACGGCGACGGCGGGA 3480414 28 100.0 32 ............................ CAGTTCGCGCCGGGCAATACAGCGGTGATGCC 3480474 28 100.0 32 ............................ GACGGACATTATGACCGGCAGCGCTGAGACGG 3480534 28 100.0 31 ............................ TGTAAATCTCTTGTGATATCAGAGATTTTTT 3480593 28 92.9 32 ...........AG............... GATGATATCCACCAGCACATAATGTTCGGCCC 3480653 27 85.7 0 ............G..........-..CG | GG [3480674] ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.1 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : TAATGTGTCGTTGGTTTGGCTTTTATGCGGCATCGAATTAAATATCGAAGAAGAAACCAATAGTCCGACAAGACAGGGGGCACAACCCTCAGATTCTATACTCCAGAGATTGTCTGCGGAACAAGCTAAGATGCTAAGTGATGCCATTATTGACCACGGCGTTACAGGCATCATTACAGCTCTAAAAGGTATGGCTACAGTGACAGATTTCCTGCGGCTTTCAGAGAATGAGAGGGCGCAGGTCTTACGGGTATATGAGCAAATCAAAGAGGGGGCATCTCAGGGCGATTCGGACGCAGCACAAAGAAGCCTGACAACTAATAAAAGGCAGGCTGGCTGAAAGAACTGGAAAGGAAAAGCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAGCTGGATGCAACAGTCCTACCTACCTACAAAA # Right flank : GGTGTTACTGGCGTTAAAACTACGCTGAGGTGGGCAACTTCGCCGGATGCACGGCATGGAGGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACTCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATAAAGCCGCAAAGAAACAATGCGGTTAATCACGCACGAAACCCTCACTCTACCGATAAACCTCACTATCTAACGCCCGGGAAAGGACAATATCAAAACGACGTCCAATCACCATTGCTACCCGCCACCGCCGCCGCCCGTTTTTCCGGCAGCGCCGGAGATAACATCGCTGGCTGACGGGTTGGCGACGTTGCGCCGCTGTTGCCTTGCGGCATCAGGCGAAATGCGCTGACCGCCTCGGCCAGCAGCGAGGCTTGCGACTGTAACGACAACGCGGCAGATGCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //