Array 1 86369-86076 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABLCF010000106.1 [Clostridium] hylemonae isolate MGYG-HGUT-01710, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 86368 31 100.0 33 ............................... GACATAGGGTACGTCCATAGTGATAAATATTAC 86304 31 100.0 36 ............................... ATCAAACCAGCCGTTGAAGATATGATACAGCCGCAG 86237 31 100.0 34 ............................... AACTCCGAACACTTCTACGCGAACCACTTTTTCG 86172 31 100.0 35 ............................... GTGTTTTTGAATATGGAGGAGATCACCACTCTTTG 86106 31 90.3 0 ....................A.....T...A | ========== ====== ====== ====== =============================== ==================================== ================== 5 31 98.1 35 TCGTTCCCCTTGTGGGAACGTGGATTGAAAC # Left flank : CAAGTTAGGCCTCAACTATGTATCCTGCTCACCATTCCGTGTGCCGATCGCAAGATTAGCGGCAGCACAGGCAGCTATCACAGCCAAGAATGCATAGTCAATAGAATAAGAATCATATTGAAAGCCGTCAGTTCTTTTTATTAAGGAGCTGGCGGCTTTTTTGTGGCAAAAATAATTAACTGTTCATTCTGTAATAATGGTATAATTGAGTAGATATCATTCAGAATTATGAAGGGGAGGGCTGTCTGGGTAATAAGTATTAAGACAGAGGCATAACGTATATGGGTTGATAGATGAGAGAAGTGCTGTATATGAGATTCCGAGTCTGTAGTGCGAATGTGAAGTGAACATAAAATTCCCGGGAGATTCGCACCAAAAAAGTTGCACAAAACAATCAGGCGTATTAGACTATAAGATAAATATGATTATATATCTAAAGAAATTCGTAGTATAGTACAAAAAGCTTTGTCTTTTTGTGCTGGAATTTAGATATATTTGCG # Right flank : CTTTTAGCAGTCAACCACGCGTTAATGAATGACTGTTGTTCTCCTTGTGGGTGTCTGCTTCTCATTGTAGATGAAGATTCACGGCCTCCGGTGACAGTGACAGGCAAGGCGGAGGAGCAGATGATCCGTTATGAGGATCTACAGAAAATGGAGGGATAACAGGACATATGATAAGTGTATGTGCTCTCCATCCGTAAGGGTGGAGAGCTTTTTTCTACCAGCATTTTGGGAGGCTGTTTTATAAAAAATAAAGAAATTATTAGGATTTCCTAAAGAAGCGGGAATAAAGAGTGCAATTTTTCAGAAGTCTGCTATAATGTTCAGTAGGCTGTGATAAAGGAGAAATGGAATGGGAACCAGATGCAGAATAAAAAATCCAATACTGCCTAAATATGCCATATTTCCGCTGCTTGCCTGTGTGACGGTAAACTTTATGGCATACAACGGGACAGAAGTGCTGACCAGGTCGTGGAAACACTATGACCTGACACTTCCTTTTG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGTTCCCCTTGTGGGAACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 1 70803-69904 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABLCF010000064.1 [Clostridium] hylemonae isolate MGYG-HGUT-01710, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================================== ================== 70802 33 100.0 33 ................................. TGACCCGGGAGGAAATGGACCAAGTTCTGGAAC 70736 33 100.0 34 ................................. ATACCACCCCAGGCCTTCTTCCAATTGCCCGAAA 70669 33 100.0 34 ................................. ATATTCCCCTGTATCGTCCAACAATGTGAATTTC 70602 33 100.0 33 ................................. CTTTTAGCGCGCTCTGATAATCATTGTATTTAC 70536 33 100.0 33 ................................. TTTGATTACGTTATAGCGTGCGATCTGAGTTTC 70470 33 100.0 35 ................................. GGCACCTCAACCGCTATTTCTTCACGTTCCGCCTT 70402 33 100.0 34 ................................. CCCACAAATTTCCGTAAACTTCTGAGGATCTCCC 70335 33 100.0 34 ................................. ATACAATTTTAAAAAAGGGCGTGGGAAGAGCAAG 70268 33 100.0 35 ................................. GCAACCGTATATAACTTGCTACATGTGGAAGCGGA 70200 33 100.0 33 ................................. ATCATCGGGCATAGGAAAGACCTAGATTTTACT 70134 33 100.0 34 ................................. GTTAAATATTTTACAGGTTTAAAAGGAAAAACTG 70067 33 97.0 98 ......................C.......... TGGAACACCTGCAGTCTTGCTCCAAGACCGATGAGTTTCCCTCCACATGGAAGGAATTGAAACCATCTGCCGACAGCCTTTGTCTCTGAGCTCCAGCA 69936 33 75.8 0 .C..T......T.C.....A.C.....C....C | ========== ====== ====== ====== ================================= ================================================================================================== ================== 13 33 97.9 39 GTCTCCTTCCGCATGGAAGGAGTGGATTGAAAT # Left flank : AGAGAAGACTGTCCACGAGATCGGGCGGAAACATAATGTGACCGTTGCCACGTCAGATGCGCTGGAGCAGGTGATTATCCTTGGGCAGGGCGGAAGAAGGCTGTCTGCGGAAGGACTTCGGGAAGAGGTAGAACTGGCGATGCAGGAGATGAGAAGCGAGCATCTTAAAGAGAGCAGAAGTACCCGAAGCTACCTTTTTGATAATCTGCCGGATGAACTGGCGGACTATGTGGAAGAGCTGCGGATGGGGGAAGACTCTTCTGATTAAAGGGTATGGGTCTGCTGAACAGGGGGAAGGGTTAAGTGTTGTGTAAGCCTCTTTTACTTTAGTGCGAATGTGAAGTGAACATATAATTGCCGGGGGATTCGCACCAGAGAACAGGCTGTTTTGTCAGCAGCGAGGCCTGAAAGATGTGAATTGTGCTGTTATTAATTTGTGAAATTGTGCAGTCTGTATAGATGTAATTGGGGTTTTAAGTTATAATATGTATAGAATTGCT # Right flank : AGCCGTCAGGCGGCAGATGTTTATTTTAATGCTCAGGTGGTTAAGAATAGAAGGCTGCCGGGGAATAAGTCTGAGAACAAAAGTCTTATTCCTTCGGCAGCCTTTACATATTATCTTATTTTGCAGCCTTGTCGGCAAAGTCGGTCGTTACGAGGTCGTCATATGGCGCCCGCTTATCAAGCTCATTGGCGTCTTCCAGTATATCCTGAAGAAGCTCAAAGCTTTTCTTTTCAAATACGAGATTGTCTTTCCATGTGTCCTGGTCATAGTATCTTGTCACGATAGTAGTGATAGTGTCCAGGTCTGTCTCTTTAAACTGAGGCGCGATGATGGAAGCAATTTCCTCAGGGGTGTGGGACTGTACATAGTCCATACCTTTCTGCAGTGCATTCGTGAAGCCCTGGATGATTTCCGGGTTTTTGTCGATATAGCTCTTCTTTGCGGAGAAAGCGGTGTACGGAACATAGCCGCTGTCGGTTCCGAGGGAAGCTACGACATAC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCTTCCGCATGGAAGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 108967-107859 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABLCF010000065.1 [Clostridium] hylemonae isolate MGYG-HGUT-01710, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 108966 34 100.0 32 .................................. ATCATACTGCCTTCATAAATATTGCAGCCTGT 108900 34 100.0 32 .................................. CAAGGATTACGACGGAAATAAACCTGTTATAA 108834 34 100.0 32 .................................. TAATATCCCTTTCACTTAAATAAATTTTTTCC 108768 34 100.0 32 .................................. TCAAAAATTGTGTTCCATTAAAACAAGTCATT 108702 34 97.1 32 .................................C ATTCTCAAAATCATCTAAGTCATTAGTTGGAA 108636 34 100.0 33 .................................. CCGGATCCACGTCCCATACACTCTCACAGTAGT 108569 34 97.1 34 .................................G CATATTCACCCTGGTTCTTCGCGTAATTCCCTTG 108501 34 97.1 33 .................................T TCTCAGAAGGTAGTGACCCCATTGAATTAACCG 108434 34 100.0 32 .................................. TAATAAGCCAGCCTCACCCTCTCTTCACTGGT 108368 34 100.0 35 .................................. ACTCATATGCATTGACTGACGCTAACTGTGCTCTT 108299 34 100.0 35 .................................. CGAGATATGTAAGCTCAAATATCTGCTTTTCCTCT 108230 34 100.0 33 .................................. ACTCCTTCAGACATGGATTCTTTCCAGCGTTCC 108163 34 100.0 33 .................................. CAACCGGATTAGGAAAAAAGGAGCATCCGAGAC 108096 34 97.1 35 .................................G AAGATACTATGACCGACAGCCCCACCTATGGAGCC 108027 34 100.0 34 .................................. TCTGAAAGCATCACGTTACATATCCATAGAGGCT 107959 34 100.0 33 .................................. TGACCTTTGTGTTTATCAAACTAGTGAGATATG 107892 34 79.4 0 .......T....C...A..A.A.....A.....G | ========== ====== ====== ====== ================================== =================================== ================== 17 34 98.1 33 GTCTCTACCCATTTGGGTAGAGTGGATTGAAGCA # Left flank : GAAAGCGGCGATTAAGAAAAGTTGCAAAGCAATGTGTAAATTATGGACAGCGGGTGCAGAATTCCGTATTCGAGTGTAATCTTGATGCGGCGAAATATCGGCAGGTAAAGGCAATTCTTGAGGATATTGTCGATAAAAGTAAAGACAGCCTCCGATTTTATAATCTGGGAGATAAATATAAAAACAAGGTTGAACATATCGGGGCAAAGAAAAGCTTCGATGTGACAGATACTTTGATTTTTTAACTTATCAGGGAGTAAAACTTTTTGACCGCGTATAGGCATAAGTTGTGTGGCTGGCGGCGCAAAATCTGTTGAGAGAGTAACTATGGTGCGAAACGTATGTGAACATAAAAATGCCGGGAGATTCGCACCGAAATGTATTAGATATTTTTGATAAAAAAGTGAAAATGTAATAGAAAATATTATTTTACTACCAAATAGTATGCAATTGTGACAAGTATTCGGATAGTATGTTGAGGAATAATGTGCATAATTGCT # Right flank : CTCTAGCTAGAGCTGGTTGAGGCTTACCCATTGTCTCTTCCCATTTTTGTATGTGGCATTTTACGGGCCGAAAGGTTCTATCTGACCTGGGGATATACCGATATGGGCAGGGTGATCAATGGGTTAGCCGCTATCGTTCAGTACAACTTCAAACTGGATTTTTTTTCAAATAACCTGTCTCTTTTCTGCGGACGTAAATATAATCGTATAAAAGCATTTGATTGGAAAGGGAATCGTTTTCTTCTGTAGCCGGCTGCTGAAAGAAAAACCGCTGGAACAGAAATCCCCTCATGTTGATGAAACACCTGTCCAGGGTGCTTTTTGAGGAGGGAAGAAGAAAAGCTCCGGTCTGATGAATTATCTTTGGGATGGTAACTGCTCCATTCCAAACAATCTTGCAGAAAACGGTATCCGTCCATTTACCATAGGTCGTAAGAACTGGCAAATCAACCATTCAAAAAATGTGTCGCCCCCATACCTTTCAACAATAACAGAAGGGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTACCCATTTGGGTAGAGTGGATTGAAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //