Array 1 89787-85803 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063996.1 Xanthomonas translucens pv. undulosa strain XtFa1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 89786 31 100.0 33 ............................... ATGGCTGCACCTCACACCGCATAGTAAACCAAA 89722 31 100.0 36 ............................... TGTGATCTGCCAAGTGCGCCAGTTAAGGTGCCGGCC 89655 31 100.0 33 ............................... TTTTACAAATTGAGCGGATCTGTAGGCCATATG 89591 31 100.0 37 ............................... CTAACGAGCGCGTCATGGCAAAAGTTCGGCTAGTGGA 89523 31 100.0 34 ............................... GATATTGAGGGGCCGGGGGTATACACCGTCACGG 89458 31 100.0 33 ............................... CCACAAACTACTCGATGTACTCGGACAATGCAG 89394 31 100.0 34 ............................... ACCTTCTGGACCCGGGCCAGCACGTTGTGCCGGC 89329 31 100.0 34 ............................... TGGTGCAGACGCGCAACCCGCCAGTGTGCCCCGC 89264 31 100.0 34 ............................... CTCGGCCGCCGGCCCGTCTTGCGTTGGCCTTGGT 89199 31 100.0 35 ............................... AAGAACGCCAAGACGCTGACGATTCCGCTGTACTT 89133 31 100.0 36 ............................... ATCGCGGGTCATGTTGCAATTATTGACCATGCTTTG 89066 31 100.0 36 ............................... CGCCGCTGCTTTCATCAATCCGCTCACCGTGGGCGC 88999 31 100.0 35 ............................... AGCATGTGCTGGCCGGGAGACCGCAGACCTTCCGC 88933 31 100.0 35 ............................... GTGGTATGCGGCCCCGCCCAGCTCCGCGAGCAGCA 88867 31 100.0 36 ............................... TGGGAAGTGAATCCGAACACGCGCCGAGACTCCAGG 88800 31 100.0 36 ............................... ATGGGCGAAATCAAGCACACCGAGGACGGCAAGTAT 88733 31 100.0 36 ............................... ACCATCGAGGCCGAGTTTAACGGCATGTACGTGGAC 88666 31 100.0 36 ............................... ACGTTCAAGTGGACGAGTAGGTTCCACAAGTCGGCG 88599 31 100.0 34 ............................... TTGTCCATCGCGCAGGCGCGCTTAATGACCACGC 88534 31 100.0 34 ............................... TCCTGTTCGAAACTGGGGGTGTGGTTGCCGATGA 88469 31 100.0 34 ............................... TACTACTGCCGGGCCGAGGCACTGGTGGCGGCGA 88404 31 100.0 36 ............................... CGGTACGGGCGAACGTCAGGGCAATGCCGTTGCCGG 88337 31 100.0 34 ............................... AAGTGTGCATCGCCGTGGCCCCTCTTGCGAAGGG 88272 31 100.0 33 ............................... AAAGGGGAGTCAGGTTAAGCACTTCGCGCAGCT 88208 31 100.0 37 ............................... GATTCCCATCTCTTACAGTGTGAGAGAGAACCGGAGC 88140 31 100.0 34 ............................... GATAACTCGAGTCGATTCCGAGATGCGCATGATC 88075 31 100.0 35 ............................... TGAACACGGTCGCTGAAGAACTCGCCACCAGAGAG 88009 31 100.0 36 ............................... CTCATGGCAGGCCTACAGTCCTGGCAGCGCGGGACG 87942 31 100.0 34 ............................... ATTCAACACCTGCATCACCAGCCCGCCCTACTAC 87877 31 100.0 34 ............................... AGGTTTCCGCCGTAGCGAGGGGCCGTCTCGTCGA 87812 31 100.0 35 ............................... CGCCTGCCCTTTGCCAGATTTGGCGGCGTCCAGCA 87746 31 100.0 33 ............................... CAACCCGAGCGGATCTGTAGGCCATATGCGCGA 87682 31 100.0 35 ............................... GTGCGTACTTGGCCGACCGCCGGGCTACGCGCGCG 87616 31 100.0 35 ............................... TTCCGCATGCCGTCCTCTCCGAAATGCTGCGTGAG 87550 31 100.0 34 ............................... CACTTCGCGTGCTCTGGGTGTTTGTCGTCTTTGG 87485 31 100.0 37 ............................... CCTCCCAACTGTGCCGGGCCAGGGCCACCATCGCCGC 87417 31 100.0 35 ............................... CGAATACGGCGCCTGAGGTAATCCCGGTTGTGTCT 87351 31 100.0 36 ............................... CTGGGGGGTTTTGGGCGCTGGGGGTCCGCGTTGAGA 87284 31 100.0 35 ............................... ATGGGCGAAATCAAGCACAGCGCCGATGGCAAGTA 87218 31 100.0 36 ............................... GTCTCCCGCTTCGTAGAGGAGGGTGTGCGCGGCAAG 87151 31 100.0 35 ............................... CAAAATTTCATTACGATGGACGACATCGTCACCGA 87085 31 100.0 37 ............................... ACCTGCTTGCGGCGCAGTTCGGCGGCCTGCAGGTCCA 87017 31 100.0 36 ............................... ACGGCCCTGGCCGAGCGGCAGAAGCTGTTGCTGGCG 86950 31 100.0 35 ............................... AAGCGCGACAGCAGCAAGGCCGGGAACCTGCAGCT 86884 31 100.0 35 ............................... CGCAGTCTCTGGCCGGAGATTGAGCTGAACCGCTC 86818 31 96.8 35 .....................T......... TGTACAAGGCGCACAGGCTAGCATGGCTCCATGTC 86752 31 100.0 34 ............................... TCGGATGTGGCAAGAGCGGCGTCGTCCAGATCCG 86687 31 100.0 36 ............................... CGGGACGCGGCGCTGGGTGTCGTGGACGCCGCGCGC 86620 31 100.0 33 ............................... ACAGACCTGGCCCAGCGGCAGAAGCTGTTGCTG 86556 31 100.0 33 ............................... ACGGTGATCCGATGCTGGGCGATGTCTGGGATG 86492 31 100.0 35 ............................... CAGTTTCCCCCCGCCGTTGGACGCGGGCGAGGGTC 86426 31 100.0 34 ............................... GGTGATCATCCTCGACGAGTGCTACACCGTTTTC 86361 31 100.0 34 ............................... TCCGTTGGGCCAGGTAGTGATGCACAGCCAGAGT 86296 31 100.0 35 ............................... GTGATGTGTCTATCGCCCCAGCCTGGATGATTCTC 86230 31 100.0 34 ............................... TCGATGCCGGCGGCCTGGCAAATCTCAGTCGCCC 86165 31 100.0 35 ............................... ACGACAGAAGCAATCACAGTTACTGCAATACTGAA 86099 31 100.0 35 ............................... CTGGCCAACCTGGTGGTGCTGGTCTTCACTTCCAG 86033 31 100.0 35 ............................... TCGGTATAGCGGTGCTTGAGGTAAAGCAGGCAAAG 85967 31 100.0 36 ............................... CGTTACCAGCGCAGCGCCATCCTGATCGACGAAACG 85900 31 100.0 34 ............................... TCCAAGTCGGGATGGTCCGCGGCGCCGGCGCGGC C [85887] 85834 31 96.8 0 .........................C..... | G [85807] ========== ====== ====== ====== =============================== ===================================== ================== 61 31 99.9 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : TGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAATGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGACCGTTCACGGTGACCTCGGCCTTGTACTTGCCCGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //