Array 1 71537-71145 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCJS01000035.1 Nonomuraea sp. 160415 NODE_35_length_83332_cov_20.7432, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71536 29 65.5 32 ..T.C.......GG........CCGGTT. AGGGTGCGGAGGACGTGGGTAGGCGCAGGCCG A [71532] 71474 29 62.1 25 ..T.A.......GG.AC....AC.G.G.A CCGCCGACGCCAGCGCCTCCTGCGC C [71452] Deletion [71421] 71419 29 72.4 32 CGC.GG.T...C.....A........... ACAGCGAGAGGGGCACGGCGCGGACGGGAGAA CA [71403] 71356 29 100.0 32 ............................. GACGTGGCTAGGAGTAGGGATCGAGGCTCACC 71295 29 93.1 32 ...T.....................G... GTCTGGAAGTCCGACCCGCCCGGGTGGCGCGA T [71292] 71233 28 82.8 32 ...-.T...............A..G...C CGGCGTCAACCGCAAGTTCAGCGAACTTCTGC 71173 29 75.9 0 .T.......G...A..C....A..G...C | ========== ====== ====== ====== ============================= ================================ ================== 7 29 78.8 31 GCGCTCCCCACGCCCGTGGGGGTGATCCG # Left flank : ATGCCGGGGCGGAGCAGGCGGAGAGCGTCGGCGTTGTCCCGGCCCTGCGCGACAACGGCACCCACGAGAGCGGAGAGGGTGTGGCGAGGGACGCCGAGCCAGTCGGCCCACGACGCCCAGTAGCGGTCGTCGCGGACGATGGTCTCTCCGACGTCGAAGGCGAAGGTCAGCACCAGCTGAGCCTATGAGGCGCGGAAGGGGGTAGTCGCCACGGGGCCGCACGGCCAGAGCGTGACGCCTGGGGGCGTGGAGGAGTGGGGCCGGATCAAGGGTGGACTGGCCGATCTGCCGCGCGACCCCGGACTGCCGCTCCAGCGGCTCACCCCCACAAGCGTGGGGACCGGGAGGGAGATGCTCGTCACGGTGATCGGCGTGGCGGCTCACCCCCCACAAGCGTGGGGCGGGGCTATGCCGGACGTCAGGTCGGCCGACCTGAGCGGCTCACCCCCACAGGCGTGGGGACCGGAGCTGTCCATACCGAAATTCGGCGGACATACCCG # Right flank : GTTCCGGGCACGTTGCTTACCGGACAAATAGCCCAGCGGCGGAGCAGGATGTCGTTTCCCACAACGGGTGGAGTGGGCTTGGAACGGCCGCGCTCACCGAGCGTACACGGCCTCGACGGCGGCGATCACCCCTTACGCGGTCTCATCGATCACCCTGTCACCTTGACCTCGCGCAACGACCTGGCCAATGCCTACGAGTCGGCGGAGATCTGGACCGGGCCATCCCCCTGCTCGAGGCCACCCTCGCCGACCGCGAGCTAGTGCTGGGCCCAGCCACCCAACGACTCGAGCCGTCCGGCGCAACCTTGAGCAGGGTGCCACAGAAGTGGCCGGAGAGACCCGCTAGGTGGTGGAGGCGGGTACTGCCGAGGCGGGGCAAGCTGGCTGTTGATCTTGCAGTGCGCTGCTGGCAGCTTCATTGAACGATCGTTATCTGGAGCGTCAGCGGACTGCACTCAGCAACAGACGACCCCATGCCGGCGGCGTCGGGCCCACCACGC # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:3, 3:0, 4:-0.06, 5:-1.5, 6:0.25, 7:-0.05, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCTCCCCACGCCCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5231-5520 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCJS01000417.1 Nonomuraea sp. 160415 NODE_417_length_5667_cov_18.4971, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5231 30 96.7 37 ...T.......................... CCGACCCGCATCGCCGACGCGAGGCGTTGCGCCTCCG 5298 30 100.0 34 .............................. GAGCGTAGGCCGGTGAGGCTTTCGTAGACCTTCC 5362 30 100.0 35 .............................. AAGGGCGGCGGTGCGGTCACGTCCACGGCGAACGT 5427 30 100.0 34 .............................. ATGTGGCCGGCGGGCGGGGCCACGCCCCACGGCG 5491 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 99.3 35 GGTCACTCATCACCCTGGAGGGATCGCAAC # Left flank : CTGCCGAGGGACCTGCTGCTGAGCAGGTCGATACGACGGAGACGAACGAACCGGTTCATGACGATGACCACGATTCCTCAGGGTCGCCGGATCCTGATGGCTGCGGAGCGGGAGACCTACGTCGAACGGCCTGGCAGTGGGCCTTGGCCCATCGCCTGCCCGATGGGGCTCTTCCATCGGGCAGGCTCATCGCTGAGCAGTTCGCGCGGAGTGCTCGATGGGGTCGCTGGATCAAGCGGATAGGTCTCGAGGGAAAGCTCGCGGAGCATGATCATTCCGCTGTCGTATGACTCGGTGAGTCACCAAGAGGTACGTCTCTCGGATCATGCCATGACGGCGGCTGTTGCTACGGTGCAGGAAGCAGAGCGTCGTGAACTCCTTCGCGATTGAGGAATCGATCAATACCCTGACGTGCGCTTCTGCACGACTGGCGAACTGCTGCAAAAATGGCGTTATCTGTAGGTTGTGCCACAGTGCCTGACCTGTGGCTTTACCTTGGG # Right flank : GCGCGCACCCACACGCCTTCTGAGGGGCCTCGGAGATTCCGGACAGCGTCTGGTGGTCTGACCTACGCTGCGGACCGCCGGGTCAGGTACTGGTCTTCGACTTCTTGCGGAGTCTGATATCCGAGTCCCGAATGCAGACGCTTGCGA # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCACTCATCACCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 32141-30385 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCJS01000136.1 Nonomuraea sp. 160415 NODE_136_length_33889_cov_18.6252, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 32140 29 96.6 32 ...................C......... CAGGAAGACGGCGTCGAAGTCGGCCAGTTCCC 32079 29 93.1 32 T......T..................... AGAGCGTGGGACACCGTGGCCAGGCGGGAGCA 32018 29 100.0 32 ............................. GTGCACAGAGCCCTACGCGAGGCGAGCCTGGT T [32013] 31956 29 96.6 32 ......T...................... TGCACACCTACACTCGCATCATGCCGAAAGCC 31895 29 96.6 32 .....................A....... CTCGCCCAGGCCGCGCAGGCCGCCGCCGAGGT 31834 29 89.7 32 .........T.T..............T.. ACGCGTCGTGTGATGTCACATTCGGCCCGTTT 31773 28 86.2 32 ...................A.-.A....C GCGGGCAGGGCGAGTTGGTCGTTGTCGGCTTC 31713 29 96.6 32 ...A......................... TTCGCTCTGGCCGGGACGGCTGATGCGTTCTC 31652 29 100.0 32 ............................. TCGCGGAAGGACACCGCCTTGCGCGTCCAGTC 31591 29 100.0 32 ............................. CCCTACCTCGTGGTCGATGCCAGAGCCGACCA 31530 29 100.0 32 ............................. AAACACGGCGGCGGTCACCGGTCACGCTCCTC 31469 29 100.0 32 ............................. CAGCACGACGACAAGGGCCAGAAGCTGTGGAC 31408 29 100.0 32 ............................. GTGAGACCGATGGCGGCGTTGCCGTCCGTCAT 31347 29 100.0 32 ............................. AGCTGAAGAGCGCCATCGACGCGGTGGTGGCG 31286 29 100.0 32 ............................. GCGATCGGCTCGGCTGTGACGAGTAAGTGACG 31225 29 100.0 32 ............................. AGGGGGTGACATGCACGTCCACGTAGGGGCAC 31164 29 100.0 32 ............................. GAAGTCGGGCGTGGTTGTGATCCACGATGCCC 31103 29 100.0 32 ............................. GCCATCACCGCGGCCAAGGCCGAGGGCGCCAC 31042 29 100.0 32 ............................. GGACTGTTCCCCTGCATGCCTAAGCCCGCCCG 30981 29 100.0 32 ............................. GCTTCATCCGCAGCGTGACCGCTGTGTGTGAG 30920 29 100.0 32 ............................. CGATCACAGACCGTCGTCGGCCTCGCCGCGCC 30859 29 96.6 32 ...........A................. AGAGAGCGCGGATGGCGGCTCCCCGAGGGTGC 30798 29 100.0 32 ............................. CTGACGGCCGCGCTCGGCCCCGCCGCGTTCCC 30737 29 96.6 51 ....................C........ CCCCATCTAACGGCTCTTGTTGCACGTGGGCTCCGGTCCCCACGCCCGGAC 30657 29 100.0 32 ............................. ATCACCGCAGCCACGCCCGGACCCGCACGGCC 30596 29 100.0 32 ............................. TCGCCGGAGATGGCCCGCGCGCTGGCCTGGGA 30535 29 100.0 32 ............................. ATCTACGTGCCGACCCGGCACGCCACCCCCGT 30474 29 100.0 32 ............................. CTCGCTGAGCTTGGGGCCGAATGCGTGGCGTC 30413 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= =================================================== ================== 29 29 98.1 33 CCGGTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : TGCGCAGCCGGGTAGCAGCCGGTCAGCCGGTTGCTGCTGGCCAGTACCACGCGTTTGACTCCCGTACGCCGCGCCGCCTCAAGCACGTGGTGGGTGCCCAAGACGTTGCCATGCAGGAGGTCGGCGAGCGGCGCCTCATCCGGCACTCCGGCCAGGTGCACGACCGCGTCGGCACCGCCGATGACGGATATCGCGTCCTCGATGCCAGCCAACTGGGCTTGGTGGACTTCCTCGGCCGGCCCTTGAGCGATCAGCGGCGCCCGGTCGACCGAGATCAGCCGACGCAGTCGACGCCGCAGCGGCTCACGCAGCACAGATCCGACCCGTCCGGCGGCACCGGTAAGAACAACTGTCTCCATCGTCATAAGCCCGCAGTATGGCAGCGGCTACCGACACTCCTGATCGCACAAGGTCTCGCGTTGATCACCCGCGACTTTCAGCCCGGACGCGGGATGCGGCAGGGATCATGTTAGGACTTCTAAGGGAAGCCCTGAAGAGTA # Right flank : GCGTTGACCTTGGCGGCCAGGTCCTTCAGGTCCCGGTCCACACAGGAGGACGAACAGATCCCAGTACTCGGGCAGGATGCCGAGCTGGGCGGCGGCCTGCTCGGCGTTGAGCGGCATCACGGGGTCACCTCCCATACTTCGGCGATCCCGCCCTCGCCGTTGACCTCGATCCGGCCGGTGGGGCTGCCATGGCCGTATTCCAGGCTCGGCAAGACGCCGGTCTCCAGGTACGGGGTGATGCGGGGCGGTCGGACGAGCACCAGCCCGTGCGTGAACGGCGGCCGCGGCTGCCACACGCCTTCCTCTTTGCCGATCCAGCCGGGGGGAGACCAGGCCCGGGGCGGAGCACGATCTGCCAGATCGCGCCGGGGATGGCGCGGACGGTCACGCCGAGAACGAGGACCAGGCCGGCTCCAATGCCCCCGGGCAGCGGCCACTGTCCATCGGGCAGGTCGCCGCGGGTGAGGTGGATGAGGACGTGCTGCTCGCCGAGCTGCTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGGTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33752-33118 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCJS01000136.1 Nonomuraea sp. 160415 NODE_136_length_33889_cov_18.6252, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33751 28 86.2 32 G.A.-..G..................... GCTACGGCCAATACGGTCACCTCAGATCTCCA A [33744] 33690 29 100.0 32 ............................. ATGACGGGGCCCGACCTGCGGAGGGCCCAGTG 33629 29 96.6 32 .T........................... CGGCAGATCGGCAACGCCGTCCCGGTGGGCAT 33568 29 100.0 32 ............................. GCGCGCCGTGTGATGTCACGTTCGGCCCGTTT 33507 29 93.1 32 ....C.............A.......... TTCTTGCTCATCGGCACCTCGCGTGGCGCTAG 33446 29 96.6 32 ...........A................. TAGCGTGCATCTTGCTATGTCAGCGCACTACA 33385 29 96.6 32 ...............T............. AACCACAGGCACAGGTGCACGCCGAACGTGAC 33324 29 100.0 32 ............................. ACGGCGACGATCACCGTCACGTTGCGGGACGT 33263 28 96.6 29 ......................-...... TCCCCCGTCCCTTTGAACTCGGTCTTGAA 33206 28 96.6 32 .....................-....... AGGAAAGGGGTGCCGTAGAGCAGCCAAAGCGC 33146 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.3 32 CCGGTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : CCCTGCGCAGCCTGGACACCAACGCCTGCAAGGCATTCACTTCGTCCGCGGGCGGCCGTTGCCCCCAAATCCAGTCCACCAGCCTCGCACGCGTGACAATCCGGCCCGGTTCGAGGGCGAGTGCAGCCAGCAGCGCA # Right flank : AAGTGGGCTCCTAAGAGCCACTAGCAAAATGATCTGTCGGTCGGCTGCTGGTCGAAGGCGTGACGAAGGGTGTAGTCGGCGGTGGCGTAGTCGCCGCCCTGAAGTTGGTCACCGGTGAAGTACCCTGCCGATCCAGGGGTCCGGTCGGCGTAGGTCTCTGCGTCATCGCGGGGATGGTAGCCGAGTTGGTCGTCGAGTTCCCAGAATCGGCGGGTGTTGGCCGAGACCGCGTACGCGGCGGTGAAGGTGATGCCCGGCCGGGTCAGCGCGGCCCAGACGAATCCGGCGCAGTCCTGCGGGCTCAGCCAGGTGGCCAGGTGCCGTGGCTCGCTCGGCTCGGGTTCGAGGCTTCCGATGCGCAGGCACACCACTTGCATACCGAACTTGTCGGCGTACAGCCGCCCCAGGGCTTCCACGGCGACTTTGCTGACGCCGTACAGGCCGTCGGGGCGGGGCGGCATCTGCGCCGAGACCGTCTGCGCAGCCGGGTAGCAGCCGGT # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGGTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : CCGGTCCCCACACCCGTGGGGGTGAGCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //