Array 1 1107-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYH010000234.1 Salmonella enterica strain S15BD05371 234, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1106 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 1045 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 984 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 923 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 862 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 801 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 740 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 679 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 618 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 557 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 496 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 435 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 374 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 313 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 252 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 190 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 129 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 68 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTGTCCAATTAACCCAAACTTTGCGCGCTTAATATGTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1039-2942 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYH010000029.1 Salmonella enterica strain S15BD05371 29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1039 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1100 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1161 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1222 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1283 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1344 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1405 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1467 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1528 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1589 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1650 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1711 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1772 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1833 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1894 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1955 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2016 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2077 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2138 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2199 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2261 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2364 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2425 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2486 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2547 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2608 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2669 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2730 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2791 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2852 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2913 29 96.6 0 A............................ | A [2939] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //