Array 1 176393-175879 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBF01000008.1 Schaalia suimastitidis DSM 15538 G438DRAFT_scaffold00004.4_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================== ================== 176392 29 100.0 32 ............................. ATTCCACCAGTCCCAGGGCACAACCTCCTGAC 176331 29 96.6 32 ............................T GCGTTTAACAGCATCAGCGATGCTAGAACCGT 176270 29 100.0 32 ............................. CAATTGGCTGATTATTCGAATTATTCGGATAG 176209 29 100.0 32 ............................. TCACTGGTAGTGCTACGGTGTCGCGCCTAGTG 176148 29 96.6 32 ............................C GACGACACCGGATCGTGGGACAGTTACCACAA 176087 29 96.6 90 ............................C TGACGGACGCGAACGAATTGTCATTCCTGACAGTTTTCCCCGCCACGGGGATGATCCGGGGACGGAGGCGTCGCCTAGTTCGCGTACTCG 175968 29 96.6 32 ............................C TACCAGGCGGATGGACGCCCATTTGCCCGCGT 175907 29 82.8 0 ............CA.........C..T.T | ========== ====== ====== ====== ============================= ========================================================================================== ================== 8 29 96.2 40 GTTTTCCCCGCCAGCGCGGGGATGATCCG # Left flank : | # Right flank : ATGTCGATTTCTATAAACACGGTTTCCCTTTTTCATGGCAAACCCCCGCTTGTTGTTCCGAGCAGGGGTTGTTTGCCTACTGTTCAGATTTCTACAGGCATTGTGGCTGCGCCGTCTTTAAGGAGGTCTTCCCTGAATACCCATTCGCCGTATTCTGCGTCCTCGTCACAGTCTTTAAGGTTTTCCATCCAAAATTTACGAATGGGGGCGCTAAATCTGAATCCATCTACCCTCAAATGCGTGTACGCGTCCGAAATGCCCCATGTTGGTTCACCGCATGAGATCATTTCGTCAACGTGCTCTAAAGATTCGCTGTTTGGAGCGAATTCTGCGATTTCTTCTCTTGAAGCTGCGACTGCTTCGTCAAATGTCAACAAGTGCCCACCCCTTTCACTTTAAGGAATCGAACAATTCCTCTGTTGTTGTCCCGTCTGTTTTCCTCCATGCTACTTCTTTGACGTGGCGAGGGGTAGCATGAGTAGTTCTTGGAACTTTTCTAG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.69, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCCAGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 278-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUBF01000013.1 Schaalia suimastitidis DSM 15538 G438DRAFT_scaffold00009.9_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 277 29 100.0 32 ............................. ATCAGCGGGATTGAGGAGGCTGTTCGCACCTC 216 29 100.0 32 ............................. GACTCCGGGCTGAAAATTGACTGACCCTGCCG 155 29 96.6 32 ............................C GGCCCGCATCCATCAAGCTACGAACCGCTGAC 94 29 96.6 32 ............................T TGCCGGGAGTACCCTTACGCATCCTATATATA 33 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTTTTCCCCGCCAGCGCGGGGATGATCCG # Left flank : TATCTGTCAATGAGTTGTTTTTATGGGACGATCAAATGGGCGGAGTAGCCGCAAGGGTTTCCTACCAGGAGAGGTAGTGTCGAATGCTTGTCCTGGTTTTGTCTTCCGTACCAGAAGGTTTGCGCGGACATGTGACCAGGTGGCTGTTGGAGATCTCTCCAGGAGTCTTCGTCGGGCAACTAAGTGCGCGTGTCAGAGACCGGTTGTGGGAAACAGTTACGAGGACGATGGGTGAGGGGCGTGCCGTCATGGTATTTCGCGCTCGCAACGAACAAGGATTACAGTTCCTCACCTGGGGTGATCCGTGGATGCCTACTGACTTCGAAGGATTGACGCTCATCGTTCGGCCAGGTGTTGAAGGAGAAGGCACCTATCAAGTGCCGAATCAGACGGTGAATCTGAGGCGTAGGGGGACGAGTGATTTTGAAAAACGTCGGCAGGCCCGACGAGGATTTCCAAGATCCGATCGTAGTGTGATGTAATATTGCTGATTATTAAGT # Right flank : GCTTG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCCAGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //