Array 1 147696-147058 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFGH01000027.1 Escherichia coli strain BE2894 sequence27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 147695 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 147634 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 147573 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 147512 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 147451 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 147390 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 147330 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 147269 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 147208 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 147147 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 147086 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCTATTCAGATGCCACACGCAGCCCGGCTTCTTATTGAATCCGTCTACGGTGAGGACGTGGTAATGCCGGAAGGATTTGCCCGCAGCGAGCAGGAGCAAGTGGGCAAATATTACTGCGATCGCGCAATGGCTAAAAAGTTTGTGCTGAACTTCAGGCCCGGCTATGCCGCCAATATCAACGATTACCTCCCGGAAAAACTGTCGACACGTCTGGCTGAGGAGTCTGTTTCCCTGTGGCTGGCTACCTGTATTGACGGTGTGGTGAAGCCTTATGCCACCGGTGCTCACGCATGGGAAATGAGCGTTGTCAGAGTGCGCCGAAGCTGGTGGAAAAAACATCGGGATGAGTTTTCTTTACTGGAGGGAGAGGCGTTCAGGCTGTGGTGCATTGAACAGCGACAAGATCCGGAGATGGCAAACGTGATTTTAGTCAACGATGACGAAAGTTGCGGGTATTCGGCTAAACCGAGGCGAGGGAGATCAGAGATCAGGCTATTACA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 168819-167448 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFGH01000027.1 Escherichia coli strain BE2894 sequence27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 168818 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 168757 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 168696 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 168635 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 168574 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 168513 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 168452 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 168391 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 168330 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 168269 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 168208 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 168147 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 168086 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 168025 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 167964 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 167903 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 167842 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 167781 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 167720 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 167659 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 167598 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 167537 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 167476 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //