Array 1 29775-30885 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGEC01000090.1 Nocardiopsis sp. NRRL B-16309 P441contig38.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 29775 37 100.0 35 ..................................... AGGTCCAAGTACACGGTCGCGGACTGCTGCCGACC 29847 37 100.0 36 ..................................... CGCATCATCGAGGGCGTCGCCGCCGACACCACAGAG 29920 37 100.0 35 ..................................... TCGACAATGTTGATGTGCCCCGTGTCGCCCCGGTA 29992 37 100.0 35 ..................................... ACCACCACTCCTGACCGGTGTGGGTGATGCTCTGG 30064 37 100.0 36 ..................................... CGAAGGGACCCATGCCCACCACACCCCAGAACCGGC 30137 37 100.0 36 ..................................... GCCGTGGCAGATGTAGACCACGCCCGGAGCCCAGGT 30210 37 100.0 36 ..................................... AACTTCGTGCCGGAGGACGGCTCCTCCTGCCCTCCG 30283 37 100.0 36 ..................................... ATGCCGTTCGACACGGCCGACCGGAGCGCTGACCAG 30356 37 100.0 36 ..................................... TCGTACACGTCGCGCATGTCCACCAGGGGCTTCGGT 30429 37 100.0 34 ..................................... CCTCAGCGGGGCGCCCAACGGCAGCACCACCTGC 30500 37 97.3 36 ...........T......................... GACCCCGGCGGCGCGAGACGCAACGTCGACCTGCCC 30573 37 97.3 37 ...............G..................... TACAACGAGACCAACGAGGACGTCAGCAGCACCGCGC 30647 37 97.3 36 ...........T......................... GAGGGACTCGGGCCCGTCATCGACGACGCGTCGGCG 30720 37 97.3 35 ...........T......................... GACACTCTGCAGGCGGCCGCCGAGAGCTGCGCCGT 30792 37 94.6 20 ...............G....A................ CCCGCCACCACGGCCCACTC Deletion [30849] 30849 36 75.7 0 ..A..C.-A....GT..T..G..T............. | A [30862] ========== ====== ====== ====== ===================================== ===================================== ================== 16 37 97.5 35 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : CCTGGAGAAATGCTGGCTCTGTCCCCGTTCCAGGACCGAGCTTGGCAGTGGGCGCTGGAGCAGCAACGCGAGACGGGGCGGTTGCCGAGCGGGAAGGAGATCGCGGCGCACTTCGGCCGAAAGGAGCGCTGGGGGCGACTGGTCAAGCAGCGAGGACAACGAGAAGGCGTTCTCGCAAAGGTTGGATAGGTGCTCCGTGTGAGTGAGCCCCACACAACTCCATGCGGTGTGACCTGAACGGCCTGAGAGGTAGAAGTTCCTGCGCCGCGCACAGCCGTGCTGGGGCTTCACACTTGCGGGAAGAGATCTCTGATGCGGCATGGTGAGAGTTAGCCTCAGGACGTGTCGTCGCGGGCCCGGAAGGAGCGGTTGAGAACCGGAAGTGATCGTGGGATCTCGGGGAGGTTCCTAGCTCGTTTTCGTCGGTGATGGGGAGTAGTGTCCGGTCTTGTATCAGCGCGTGGCACTGGTTCGGAAGGTGTTTGGGCAGGTTGCGCGCC # Right flank : CGACCACCGCTTCCAGCATGTACACCCCAAGCAGCAGTTGTGGCCTTGCCAGCCGTCGTGCTGGTTCGGTTCGCACTGCACCTGCCAGAGTTTTAAGGAGTTTGGAGGTATTTGTCTATTTTTGGGAACTAATGAGAAATTAGGGACTTTTGCGTTGTGTCTATTTTGTCATTTTTCTTGAAGTGCCGAGAATTGTCGTCGGCCTCCAGTAGGTTCCTTGCTCGTGGCATTCGTGAACGATTTGGGCTTGGAGCGCACCTGTGGCCTTGTGGGGGCATAGCGTCAACCACCAGGGAAAACGACACTCCCTGGAAGATCATCTGAAGGGAACCGGCCGTCGTGCCGGACAGGCCGCGAGTGTGTTTCGGGCTGCTGGTCTGGCCCGTCACCTGGGTCATCTGCATGACGTGGGGAAAGGCGCTTGCGACTGGCAGGACGGGCTGCTGCGGGCCGAGCGCAGCGGTGGGCGGGTCGGTATCCCGCACAAGCACGCCGGAACC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 38865-40505 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGEC01000090.1 Nocardiopsis sp. NRRL B-16309 P441contig38.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 38865 37 100.0 37 ..................................... ATCGGTTGCTCCAAGCGGGCATGTAGACGGGGGCAGC 38939 37 100.0 36 ..................................... ACCCTCCCTGATGTGGGCGGGTTGGGGCACATGATC 39012 37 100.0 37 ..................................... CCCTTTCTGGGGGTGGTGGCCCGCCCGGTCCCTGGAA 39086 37 100.0 34 ..................................... GTCACGGGTCGCGCCCGAAAGCTGGCGTTTGCGG 39158 37 100.0 36 ..................................... GCGAGCTTCTTCAACCCGCGGCTGATCTTCGACACC 39231 37 100.0 35 ..................................... TCCCTCAAGGCCGGCCAGGACGCCATGGTCCCCGA 39303 37 100.0 35 ..................................... GGTTTGTGCACCGCCGTTGTGCAGCCGGTGTCAGG 39376 37 100.0 35 ..................................... GCCCTCGCTCTGGTCAACGAAGGCCTGGAGGAAGG 39449 37 100.0 36 ..................................... GAGGACACCCGGTTGGGGCTGATGGCCGCGGAGACG 39522 37 100.0 36 ..................................... CGCCTCCGAGCTTGCGCGCCAGCCAGTCCCACTCGG 39595 37 100.0 36 ..................................... ACCACACACGTCGCACACAGCGATCCCCGTGAGCAA 39668 37 100.0 36 ..................................... AGCTCAGGGAGACGAGTGGGGCCACGTCGTCGGTGG 39741 37 100.0 37 ..................................... GCCAGGATGCAAATGCCTCAGTCGTGGGGCGAAGCAA 39815 37 100.0 35 ..................................... GACCAAGACGTGGGCCAGTCCGCGGAAGCCGTCGG 39888 37 100.0 36 ..................................... GCCGGTATCCCCTACCGCATGGTCGTCGGCATCCGC 39961 37 100.0 36 ..................................... GCCCTGTCGGCCCTGGGTCTCGCGTGCGTGCTCCGC 40034 37 100.0 35 ..................................... CGAGTGACCACCACCACGGCCATGAGTCGCCGCGA 40106 37 97.3 35 ........T............................ GACGCAGGGTCTCGGAGCTCACCCATGGCGCACCT 40178 37 100.0 36 ..................................... CCCTCGCGCAGGATCAGCTCTGTCCGGGCCACCTGG 40251 37 97.3 35 ...................C................. AAGCAGATCGTCGCCGGGATCGTGGAGTACGACGG 40323 37 94.6 34 ...........T..T...................... GTCCAGCGTGCCCTGCGCGGCGACGGAGCGGAGG 40394 37 89.2 35 ..........TT..T.......G.............. GATCTGGGACATCAGGGCCATCATGCCTCCACAAC 40466 37 81.1 0 ...........TT.....A.T.............GTA | C,AA [40495,40498] ========== ====== ====== ====== ===================================== ===================================== ================== 23 37 98.2 36 GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : GCTGCCCGCGGCCCAAGCCCGGATCCTGGCCCGCCACGTGCGTGGTGACCTTCCCGGCTACCTGCCCTGGACACTGTGATGGAGCTACTGGTCACCTACGACGTGGCGACCGTCGAACCCGAGGGTGCACGCCGGCTGCGGCAGGTCGCCAAGCTCTGCGAGGGGTACGGGCTACGCGTGCAGAAATCAGTGTTCGAAGTGGTGTGTACCGACGCCGAGGTGTTGACGCTGACGGACCGCATCGAGCGGATCATCGATGACAGCGAGGACAGTGTGCGCATCTATCGGGTGCCGAGGGGAACGTTCAGCTCGGTGAACACGCTGGGCATCGCCCAGTGTCTCCCGCACGGGGACTCGTTGGTGCTGTAGTGAGGAACCTGAAGTGATCAGAGAATCCCGGGACGGTTCCCAATCGCCTTCGGGTGCCTCTGGGCGCGAGTGTCTGTTTTTGACCGCATGTTCGGCGCGGATCCCAGGGGAGTTCTCCCAGTTCGCGCGCC # Right flank : ACGAGCTTGGCCATTGAGCGCCGCTGTGCCGACAGGCCCGGACGTGACCGTGAGGATCGAGACCTGATGCGGGAGCCGCAGAGGCTACCTGGTCGATACCCGCGTCCACTAAGAGCTCATCTCATTTGGATTCTCGGTAACCTGGCCGCGTGTCGATGGTTGAACGCCTTGTGCCGGATGAGCTGTGGGACCTGTTCCAGCGAGTGGTGCCCGAGGCGCCCACGCGTCACCAGGCCGGCGGGCGGCGCAGACACGGGGACCGCGAGGTGCTGGCCGCGATCATCTTCGTCGCGACCAGCGGTTGCACCTGGGCGCAGCTCCCGCCGGTGTTCGGCCCGTCCGGGCCCACCGCTCACCGGCGCTTCACCGAGTGGACCCGGGCGAGGGTGTGGGCCAAGCTGCACCGGCTGGTGCTGGACGAACTCGGTTCCCGCGGCAAGGTGGACTGGTCGCGGTGCGCGATCGACTCGGTCAACATGCGTGCCCTCAAAGGGGGGAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //