Array 1 16347-17522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAQ01000021.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM 32452 contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 16347 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 16408 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 16469 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 16530 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 16597 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 16658 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 16719 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 16780 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 16841 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 16902 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 16963 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 17024 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [17066] 17066 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 17127 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 17188 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 17249 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 17310 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 17371 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 17432 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 17493 29 96.6 0 A............................ | A [17519] ========== ====== ====== ====== ============================= ====================================== ================== 20 29 97.9 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 822-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAQ01000053.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM 32452 contig_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 821 28 96.6 32 -............................ CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 761 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 700 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 639 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 578 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 517 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 456 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 395 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 334 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 273 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 212 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 151 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 90 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : G # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //