Array 1 8582-10805 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVMK01000116.1 Klebsiella pneumoniae subsp. pneumoniae strain 298_SBOY 976_164515_4375439_754_,...,754+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8582 29 100.0 32 ............................. GCGTGGACACGGATGTAGTGCTGGAGAAGGCG 8643 29 100.0 32 ............................. TTTACGGAATTGCTTAGGTCGCGAGAATGTCG 8704 29 100.0 32 ............................. TAGTCATTTGCCGGTGACGGGAACCCCATAGC 8765 29 96.6 32 ................T............ ATTAAATAATTCGTTTACGTCCATGACGAGAT 8826 29 100.0 32 ............................. GTAATCCTGATATTGGCGTATCAATGGTCACG 8887 29 100.0 32 ............................. TAACCTCGTTTATGTGCGCGTTTTATAGTTGC 8948 29 100.0 32 ............................. TGCGGGCCACCAGGGTTGCAGGGTATCAATGG 9009 29 100.0 32 ............................. GCCCAGATCGGCTTTTCATCCCGAAGCCGGGC 9070 29 100.0 32 ............................. GACACCCGCACGCGCCGGGCAGGCGTGGAACT 9131 29 100.0 32 ............................. TCGTCGGGTTTATTGAGTATTCCGCCTGATTT 9192 29 100.0 32 ............................. CAGGTCAGCGCAATGTTCCGGGATATCGAGGA 9253 29 100.0 32 ............................. ATGACAAAACCAAAATTGAGTTTTGGCTGCAG 9314 29 100.0 32 ............................. TTGTCCACTTCACGCCAGTAGTCTTTAGAGAT 9375 29 100.0 32 ............................. AATGGAGGTCCGGTTACTGCTGGAAATGTTTA 9436 29 100.0 33 ............................. ATCCCCACCACCGGCGCTGGCGAGTAGTACCGC 9498 29 100.0 32 ............................. ATGTGAATTTCCTGGCCGGTTGGTAGTTTGAA 9559 29 100.0 32 ............................. TACTGAAACGGGTAATCAGCACAAATACCAAA 9620 29 100.0 32 ............................. CATCGCTTTATGCCGAAATGAGGATGATAGTG 9681 29 100.0 33 ............................. GAGCTTTCCTCCTCGTATCACTACCGCGCAGAC 9743 29 100.0 32 ............................. ATCAATTCCCTCATTTTTTTTCCTTTAGCTCG 9804 29 100.0 32 ............................. TTCATCTGGTAGCAAACCGCCATCGGGAAGAA 9865 29 100.0 32 ............................. ATTTTTTGGGGCACAATTTGGGGCATTTTTTT 9926 29 96.6 32 A............................ AGGGTTTCGATTTTATCGGGATAGAAATGAAT 9987 29 100.0 32 ............................. TGGCGGACGTTGTACCTGTGAGTTAATTCTTC 10048 29 100.0 32 ............................. ACCGCTCCTCTGACGCCAGGAGGGTGTAGGAG 10109 29 100.0 32 ............................. TCCAGGGGCAAAGAATTGCCCATTATCGTACA 10170 29 100.0 32 ............................. TTTGCAATATCTGCCTGCGCCGCCGCCAACGT 10231 29 100.0 32 ............................. CTCGGATAAAATGCCTTGCATGAGGCGAACGA 10292 29 100.0 32 ............................. GCGTCCAGTTGAACCCGGCACATTCCCGCTGG 10353 29 100.0 32 ............................. TACGCAGCCGGATCCAGGAGCGCATGGACGCT 10414 29 100.0 32 ............................. GCACGATATTCAGCATCATCAGGACGGTTCAT 10475 29 100.0 32 ............................. ACCTACCAGATCCACACCGGGCGCTGCGAAGA 10536 29 100.0 32 ............................. TCACGCCCAGGGCTTCCTTTGCGTTCCGAAAA 10597 29 96.6 32 ........T.................... CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 10658 29 96.6 32 .....A....................... TGCGTCACGACGCCGGCGACAGTGACATCGTC 10719 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 10777 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCGGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7167-7802 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVMK01000056.1 Klebsiella pneumoniae subsp. pneumoniae strain 298_SBOY 913_9195_467024_403+,...,542_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7167 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 7228 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 7289 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 7350 29 100.0 32 ............................. CGAAAACGGCAACCTTCATAAAAACGTCTTTT 7411 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 7472 28 89.7 32 ..........-.TC............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 7532 28 93.1 32 ..........-.T................ CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 7592 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 7653 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 7714 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 7775 28 93.1 0 ......................-.....A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.6 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACAGGGGTGTTGACAGGCCAGCCATTGAGCCACGAAATGTATATTAAA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //