Array 1 17162-22887 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNPN010000001.1 Bifidobacterium adolescentis strain BSD2780120874b_170522_D7 NODE_1_length_1005050_cov_71.1402, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 17162 33 100.0 34 ................................. CGGTAGTAATCGACATCATCGTGCTTGCTGAGAC 17229 33 100.0 35 ................................. CTGAAAATACGCCGGTTTGGTAGGCGTCACAGATC 17297 33 100.0 35 ................................. CTGAAAATACGCCGGTTTGGTAGGCGTCACAGATC 17365 33 100.0 35 ................................. CTGAAAATACGCCGGTTTGGTAGGCGTCACAGATC 17433 33 100.0 34 ................................. TTCGTGACCGGCGACCCCCAGCAGGTCGGTAGCG 17500 33 100.0 33 ................................. TCCGAGTCCACGGCGTAGGGGATTACCGTGCTG 17566 33 100.0 33 ................................. AGGTATAAGATGAAACCATGATGGAAATTCTCA 17632 33 100.0 33 ................................. AACCCGGCTTACATATAAGGAGGTGCCGGATGT 17698 33 100.0 34 ................................. CGTTGCTTCCCTCATCACGTCATCAAGGCTGCGC 17765 33 100.0 33 ................................. AGCAATGTGTGGAACGGCATCAAGGGCGCGGTA 17831 33 100.0 34 ................................. AGGTATAAGATGAAACCATGATGGAAATTCTCAC 17898 33 100.0 34 ................................. TTCGAGACGGGGGGGAGGTTCCAATGGGCGGAAC 17965 33 100.0 33 ................................. CTCATTCACCATTGGAGCGGACAGAAGGCTTAC 18031 33 100.0 34 ................................. GCCAAGCTCCCAGCCCCATTATCTTCAGTATTGG 18098 33 100.0 35 ................................. ACGATCGAATACCTTAGACGGGGACGCGATACCCA 18166 33 100.0 34 ................................. TGCGGGTCTCGGCTGTTGGCTTGCTGCTCATCGG 18233 33 100.0 34 ................................. ATTTGGACGAGGGCACGCCGCACGCGCACATCTG 18300 33 100.0 34 ................................. ACGAGGAATGCCGACAAGGCGATGCGCAAGCTAG 18367 33 100.0 34 ................................. TCGTCCAAGGCATCGTTGCTTGAGACGATGAACC 18434 33 100.0 34 ................................. ACGACTGCGGCGCTAAAGGAGTTTCCCGAGCAGT 18501 33 100.0 35 ................................. TTTGCCTGCGTCGCGACTAAGGGTGACCCTCGAAA 18569 33 100.0 33 ................................. ATCATGTGCGAGAAGTTCGAGACCATCAACGAC 18635 33 100.0 34 ................................. CTATGGATTTGAGCGAGCGCTACAACCGTCTCGC 18702 33 100.0 32 ................................. CTTGCCCGCTCGGCTGCGCCGAGATGGAGGGG 18767 33 100.0 34 ................................. ACTCGCTGACCAGTTCGACCACGCGGGCCGCTTT 18834 33 100.0 34 ................................. TCGAGCGCCGTATGGGCGAGCTGAACACCAAGCG 18901 33 100.0 32 ................................. CAGCTCCTCAACGTCCTCCTCAAGCCGTCCCG 18966 33 100.0 33 ................................. TTTTGTCTCCTCGGTGTGGAGTCTGCCGGGCAT 19032 33 100.0 34 ................................. ACCGACAACGGAATTGACGCGACGGTCAAAACCG 19099 33 100.0 34 ................................. GCCTTGTCCCTCGCACCCTCAAGGGTCTCTATCT 19166 33 100.0 34 ................................. TTGTAGTTGAACCTGCCGTCCAGAATCGGCGTGA 19233 33 100.0 34 ................................. TGGATAGGTCGGTTCAGTGGTTCGGGGCGCGGTA 19300 33 100.0 32 ................................. ACCGTTTTTCGTCTCGAATGCGATGGTAAGCA 19365 33 100.0 35 ................................. ACACTAGACAAAAAAACAATCTCCGCACCGTCAAC 19433 33 100.0 34 ................................. AGTGGCACGTTATCCGCATAGTCAGTGACGCCGA 19500 33 100.0 35 ................................. GTTGCCAGCGTGTTAGACAATTGCTGACTGTTAGA 19568 33 100.0 34 ................................. CAGAAGGCCGGCAACGGCATCAAGGACGGTGCGG 19635 33 100.0 33 ................................. GATGTGATGCGGACGTGAGCGACGCCGATTTGC 19701 33 100.0 34 ................................. CAACTGAAGCTTTACAACGCCGACCAGCCTTGCC 19768 33 100.0 34 ................................. CACGCGGCCGGTCTTCTCAAGCCACAAATCATAT 19835 33 100.0 34 ................................. GCCCTGAATCTCAATGGACTCAATGGCTCCGGCC 19902 33 100.0 33 ................................. AATTGCGTCGTGTTGGCGTTGATGTAGTCGCAT 19968 33 100.0 33 ................................. TGTAATTGTATTGCATGATGCTGTCACGAATGC 20034 33 100.0 33 ................................. CAGTGGGATGAAATGCTGGAAACCACGAACTCC 20100 33 100.0 34 ................................. CTGAAATGGCGTTAACGGACAGTCAGAAGCTTTA 20167 33 100.0 34 ................................. TGTAGGGTTTATCGGCAATTGTTGGGAACTCCGC 20234 33 100.0 35 ................................. ATATCGACTCGAAACACTCATCCGCGAAACAAAAG 20302 33 100.0 34 ................................. ATCATGGGCTATCGCGGCATGATCGACCTGGCGC 20369 33 100.0 33 ................................. AACGCTCTCCGTATCATCGGACGTGTTCGAAAG 20435 33 100.0 38 ................................. CGTACCGGTATTCCTACCGGTAAAGATAAGAAGTAAGA 20506 33 100.0 34 ................................. AGGGTAATTATTATGCGTTTGTCGTAACGAAGGA 20573 33 100.0 33 ................................. CAGCAATTGGCGTCTAAGACGCATTCGAAGATT 20639 33 100.0 34 ................................. ACGAAGAATATCGTTGATCTTTGCCCCTTGAGCG 20706 33 100.0 34 ................................. ACGAAGAATATCGTTGATCTTTGCCCCTTGAGCG 20773 33 100.0 34 ................................. ACGAAGAATATCGTTGATCTTTGCCCCTTGAGCG 20840 33 100.0 33 ................................. ATTCCAACGGTTTAACCTCACTTGAGGGTCACT 20906 33 100.0 34 ................................. TATATCCCCAACTACAATGAGGCAGGGGCGGACA 20973 33 100.0 34 ................................. ATGGATGAAGAGGAAGAATCCCAGCACATGCGAA 21040 33 100.0 33 ................................. CTCTTGACTTTTGGCGTTCCAATAGAACGCGGG 21106 33 100.0 35 ................................. TCGTACGCGGTTATGGCGCTTTCCCGTGCCTGTAT T,G [21111,21121] 21176 33 100.0 35 ................................. GTCAAGACTGCAGCGCAGGATACCGTCGTTGTCAA 21244 33 100.0 33 ................................. CAGAACGGAGCCATTCCCTGCCAGTCGGCATGC 21310 33 100.0 33 ................................. ATGCAGTTGGTGTCCGACATGGTCGGCGGCCTG 21376 33 100.0 35 ................................. GGTTCCGTCGCCGCCCGCGGCAAGCTCCAGGGCGA 21444 33 100.0 34 ................................. ACCGTCACCGACGAAAGCGCCGACCACAAGACCA 21511 33 100.0 34 ................................. CATGTTGCGGGCGTGGCCTTCTGGATGTTCAGGC 21578 33 100.0 33 ................................. ATCGACACGGCCAAGTCCAGCGTCGGCGTGAAT 21644 33 100.0 33 ................................. TCCATGGCCAGTCCGGCGTCGAGGATGCGCTGC 21710 33 100.0 35 ................................. GCCGAGCATGGCGACATGATTCGCCCGCAATACGC 21778 33 100.0 35 ................................. TCGCATACCTGCGAATCAACCTCCCCAAGTCGCGG 21846 33 100.0 34 ................................. ATTTTGTGGCCTCCAGATATGGGTTTTCGCTTGT 21913 33 100.0 33 ................................. CGCGTTCCATCGAAATTTTTTCGCAAAAGGTTT 21979 33 100.0 33 ................................. AGTTTCGCCCGATACGTTTCGTCAAAAATCGGA 22045 33 100.0 34 ................................. ATCGACACCCACCGGGCCGAGATCAACGACATGA 22112 33 100.0 34 ................................. ATCGAGGTTTGAGCAACAGACGAACTCTGCTGTT 22179 33 100.0 35 ................................. GGCTACATCATCCCGAGCTGGCGTGATCCGCTCAA 22247 33 100.0 36 ................................. TTGATGGTGATCTCACCGAGCTTGCCGGTGGTGCCG 22316 33 100.0 36 ................................. TTGATGGTGATCTCACCGAGCTTGCCGGTGGTGCCG 22385 33 100.0 33 ................................. TCACAGCTCAAGGCGCATACCCGGTCGGCTCGA 22451 33 100.0 33 ................................. ATCGTAATTATCGGAATTGCGCGGGGTTTCCAT 22517 33 100.0 34 ................................. TAGGTGTAACAGTGTATGCAGTGGTTTTTGGAGT 22584 33 97.0 35 ........T........................ GAGTTTGGGAAGCTCGTATCTGACGGCCTCGCTAT 22652 33 97.0 35 ....................T............ AACGGGGTAGTACTGAAATACTGCATGGCGCGGTG 22720 33 100.0 35 ................................. ATCGCCATGCAATCATCCGACTACCTCGCGGTCGG 22788 33 97.0 34 ......T.......................... ATCGACCATAATCAGTCTCCTTACCAGTAGAGGG 22855 33 97.0 0 .....................A........... | ========== ====== ====== ====== ================================= ====================================== ================== 86 33 99.9 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : TGATGAGGACAGTCTGCGCTTTTATAAACTTGGCTCTCGATATGCGGATAGGATTGAGCGTTATGGGCGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGGTAAAATGGCATGGTGTCATAACGATATGGTGTGGGGTATGCCGGGTTGAGTGTTTGAGTGTGACGTGTGACGTCCGGCATCTGGAGCGTGTTCTCTAGCCGGCGGTATTGTGGTTTCGGCAAGGTGGCCGGTCTTGAAATGGTGTTTGTGCGAAGTGGAAGCGCTCATGATGAGGGGTGCCTTTCGCACCTGAAAAACTGTCGAAATCCGAATTGTGATTTTCGTGGGCGTTTGAAAACTAAATAGTGGACATTAAAATGAGACAGAAAGACAGCTGCTCGTTTTAGGCATGTTGTTCGTCGTACCGGTGGTGTTGTTTGATATGCTTAAAGCCAAGCAGCTGGCTTGCGTCTCAGAAAGTGGACAAAAATGTCCAGCTGCACG # Right flank : TCGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCAGCATAGGCAGCTGGTCTCCAACAGAAACTGCGACGTCGGAATCCGCCACCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTACGGTAGGAGCCTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTCGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGGCCATGCTCCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAGCCCTCCTTGTCGATCGGCATGTAGCCGAACTCGTCGATGATCAGGAGCCTCGCCCTGGCGATCTGCCGGAGCTCCGTGTCGAGCCGGTCTTCCCGTTTCGCGCGGCGCAGCATCATAAGCAGCCCGGTCGCGGTGAAGAACCTGACAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //