Array 1 4572466-4574596 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002139.1 Xanthomonas cassavae CFBP 4642 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 4572466 31 100.0 35 ............................... AAGTGGCCCCTGCCCCTGGGAGTACCAACCGAAAC 4572532 31 100.0 35 ............................... AGCAGTGCCGGGACGCTGCCCCTACGCCGCAGCTG 4572598 31 100.0 34 ............................... CACAACGCAGTCACCAAGCAGTCCACTTGGTGAT 4572663 31 100.0 34 ............................... CGCCGCTTCGTGCTCCCGCTAGCAGATGTCATCC 4572728 31 100.0 36 ............................... ACCCACGGCGCAGACTGCCGAGACCAGTTTGAGGTG 4572795 31 100.0 34 ............................... CCTCCGGACAGGCAAGTTGCCCGCTCCTCATAGC 4572860 31 100.0 34 ............................... CTGAATCCGGGTACGACCTACGCAACCTCCCCAG 4572925 31 100.0 35 ............................... ACTAGACCTTTGACTTTGAACCAGCGCATGTTGCG 4572991 31 100.0 34 ............................... AGCGCTACATCTCTCCAACGGTCCGCAAGGTACC 4573056 31 100.0 35 ............................... GTGCTGCCCGGTGTGGCCATCAATTGCCGTTGCGG 4573122 31 100.0 34 ............................... TGGAAGCCCTTGACGATCTGGTCGGTGTCGTCGG 4573187 31 100.0 34 ............................... GCCTTGCCGTTTACGCCCACTTCCGTACGCAGAA 4573252 31 100.0 34 ............................... ACGGATTTGGACGGGTTCCAAGTGGCTCGCGATG 4573317 31 100.0 34 ............................... TTTTGCCCTCAGCTTCGTGCCGTCGCGCCTACCA 4573382 31 100.0 35 ............................... TTCTTCTTCCGGCCCCTCTGCCGGGTCATCTTCTG 4573448 31 100.0 34 ............................... TAGGTACTTCGCCAGCACTTCGGGCGGGATGGCC 4573513 31 100.0 35 ............................... TCAATGTCATTCATTGCCATCCTCCATTAGAGGGG 4573579 31 100.0 34 ............................... AAAAGCGCGTCAACGCGATTTTCGTGGATCGTGC 4573644 31 100.0 35 ............................... TCCGCCAGCTCCATCAGGGTCAGTCCCGGCTGGCG 4573710 31 100.0 35 ............................... AGCCATTCGGCACCCCCTCGCCCTGGGGCTGGGCG 4573776 31 100.0 34 ............................... CAGATCCCCTACCCTGACCCGGGCCCCCCGGGGG 4573841 31 100.0 35 ............................... ATCGCTGACGTGCTTCGACTGCGGAGGCCGGCCGG 4573907 31 100.0 34 ............................... ACACGGAATGCGCGGCTTGATCGTGTGCACCTCG 4573972 31 100.0 34 ............................... TTCTTGCGCCTGCGCGATGCCTCTGGCGCTGACT 4574037 31 100.0 34 ............................... TTCGCGGAGATGCTGATCGAGGACTCGCTGCGGG 4574102 31 100.0 34 ............................... ATCACCTGCTGCACGTCAGCCCGCAGCTGTTCCT 4574167 31 96.8 36 .............A................. AGCCAGGCCAAGAGCGGCCAGCCGCGGAGCTGCAAG 4574234 30 83.9 34 ...A.....-.........C..A.C...... AGGGCGTGCAGGAAGGATTAGGGGTGGCTGAACG 4574298 31 93.5 35 .......................TC...... CGCGCGGTGTTTGCCGACACTGGCAACAAGCACAA 4574364 31 77.4 36 ...AT....C.G.C.........G...C... AACATTGATCTACTGCCTTACGTTTTGCCCGACGCG 4574431 31 71.0 32 .....AT......A.C.AT.C...C...C.. TCAGATCGAAGTCATGCCTACGAATTTTGTAA 4574494 31 77.4 40 A...T....G.GT.C..........A..... GACCCGCCCTGCCCAGCATATACGGTGCGTGGAAATACCC 4574565 31 74.2 0 ACA......C.G.......T...G......T | G [4574588] ========== ====== ====== ====== =============================== ======================================== ================== 33 31 96.2 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGACTCAAGTCCCATGATGATTCTTGTCAGTTACGACGTCAGCACCAGCTCTCTCGGGGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTCGATCCTGCCCAATGGACTGAATTACGGCAACAGCTATGCGACCTGATCGACCCCTCCCTGGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGAACCTCAAAGGTCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAGTCGGGCAGGTTCGCAGTTTCCTCAAGCAACTGATTTGCAAGACAAAAAATAAATACATAGCGGGTTCATGGGTCCGCATGACGACTTCTCGACTGTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGAGCG # Right flank : TGCATCATGCGACGTACATCTTCCTGTAGTTCATGCCGCCCGCTGACCGGAATCAGGTTGGCATATGCCGGGGTTCTGCGTGAGGCGCGGGTCATCACGCCGGTTTGTGGTTAGAAGATTGGACGCTGTCGATCAACGCTTGAATCCCATCTACTTGACCGTGATAGTTTGCGGCGTACCTGCGGGCTTGCCGTCGACCATGACCTGCGCAGTGTAGGTGCCGGCCGGCCAGCCATCTGGCTTGCTGAAGCTGATGTTGGTGGTTTCTGCGCCACTAGTGGTCAGCGTGGCGCTCTGCTCGCCGGCCACCTGCCCATCCTGATAGGTGAGTTTGGCAGAGACCGGCACATTGCTCGCACTGCCCTCGGTCTTGACCGACACGATGATGGTGTCCTTGCTGCCGACGCTGGCCGACGGCGTCACTGTCTTGTCCGCAGCGGCAACCGTGCCGACTGCAACGCTGGACACCGTGACGCCGGCTCCAGCCATTGCCGCGCTGT # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-40] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //