Array 1 23365-23699 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS422988.1 Lentilactobacillus raoultii strain Marseille-P4006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23365 29 96.6 32 ............................C AAGTTCTAATAGAACGTTAAAGAACAGGCCCA 23426 29 100.0 32 ............................. GTCTGGTGGAAAAAATCCAACAGGCGTATGGA 23487 29 100.0 32 ............................. TACATAATGGAATTATTAAAAGACCTGGAATT 23548 29 96.6 32 ............................C GAATTTAAGGATGCCAATATCAACACCGTTTA 23609 29 96.6 32 ..........................T.. TATCAGTTGGTTGCCGACGTATCTAGCTTTCT 23670 29 82.8 0 .....T.T....A.............TT. | A [23687] ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTATTCCCCACGTATGTAGGGGTGATCCT # Left flank : TTATGCAATCAAAAGACCGGGAAGTAAACAACCGCGAATTGTGCCGCACATCACCATCGATAATCAACGCAACTGGTTGATAAAGCGAGCTGAGAAGTTGGGGTTCCATTTGGTACAACAGGTTCATAGCGATCTCCTTAAATCGAAAGACACATGGGCGTTTAATATTGTGAATCGAGACTACCAAATTCTTCGAAAGGGCCACCGAACGATTCGTTTGAGCCGGGTGACATTTGAAGGACTGCTTCAGATCGGTGATTTGGAGCGATTTAAGAAAACTCTGGTAAATGGAATCGGTCGTGAGAAAGCTTTTGGTATGGGCTTGATGACGGTGGTACCATTAAGCTAAATAAGGATTAGCTAGTATTGACGCAGAAAAGTCTAAAATTTTAGAATCTGACGGTAGCTGATACAAAAGCCACCTTGATTCTGATATTGAAACTAATGAAAAATGATGATTCTTATATTTTAAAGCACTATTATATCAACGTTTGCTTAGT # Right flank : TCACTTATGCTGCACTTTTAGCTTTGTTGATGAAATCGATGGTAGCCTAGTTGTGGATTATTACGTTTTAATGATATTATTTTTCCAAAATATTAAAAAGCAGTTCTTGTGATTTCGAAAAGCGTAAGAACTGCTTTATTTTGCATATTTGCAATCAAATGCTAATCATTATGATATAGTAATGAAAAGAAATTTGCAGTAAAATAAAAATCGTAGTATCAAATAATAAGTATTGGGGATAATCTATATGAAGCTAAACCTTAAGCGGTCGCTGTTTATTTCAGCAGCCACACTAAGCTTTTTTGCGGCTGCTGGCTTTGGGAACCAGCAGGCCAGCGCCAAAAGTTACGCGAAAGTCACATCAAATCGAACGTTGTCGATGAATCCATATGATCGAAACGTTACGTTTACTGGCAGCAATGCGCTTTATACTAAAGCAGGAACTTTAAAAGGAGCAAAATTGGTCGCTTCATCCAGTGAACTACAAAGCCTTGCCAATT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 507964-509273 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS422984.1 Lentilactobacillus raoultii strain Marseille-P4006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 507964 29 96.6 32 ............................C TTAGTGACGGTTGTAAGTGCGAAATCAGTCAC 508025 29 100.0 32 ............................. TTGCTTATATTGATCCAAGGTAATGATTTTTA 508086 29 100.0 32 ............................. ATTTCAAAAAAACGTTTACTTGAGGCGTAGTG 508147 29 100.0 32 ............................. AATCCCAGATTCAAGTTGATTCATCTGCTTCT 508208 29 100.0 32 ............................. TGGTGCTTGGCATTCTTCCTATCTCTAAGTTT 508269 29 100.0 32 ............................. TATATGGCATAAATGACTTTTTGGAAAAAGCT 508330 29 100.0 32 ............................. TGTGATCTAGTAAAAAGAACCAAATAAGGTGA 508391 29 100.0 32 ............................. GCACGGGAGACTTGTGAGCGGTTGGGGATCAG 508452 29 100.0 32 ............................. TGACTCCTTTATCGTTTATTTCAATTCGATTA 508513 29 100.0 32 ............................. CGGCTTGGGGAATATAGTATTTACTTTTAAAG 508574 29 96.6 32 ............................C TGCATCAGCTCCTGATATGAGATACAATCATC 508635 29 100.0 32 ............................. GCCAGAAGTCCCGTTATCAACTTGGTGAGCTG 508696 29 96.6 32 ............................C TGATACCAGTGCAACGACATCTGTTACCGTTC 508757 29 100.0 32 ............................. TTTCAATTAACACGTGGCAAACCGGTTGGATA 508818 29 100.0 32 ............................. GAACAAGGCGATTGCTGCCATCCCGCAGCCAA 508879 29 100.0 32 ............................. GAACAAGGCGATTGCTGCCATCCCGCAGCCAA 508940 29 96.6 32 ............................C GGATGTTACTACTGTGACTACTTTTCTTTATA 509001 29 96.6 32 ............................C GGATGTTACTACTGTGACTACTTTTCTTTATA 509062 29 96.6 32 ............................C CATTAATCTGGATCTACGAGGTACGTTTCTTT 509123 29 96.6 32 ............................C ATGATGATCTGGAAAATGGGCGATATTACCGG 509184 29 100.0 32 ............................. GAAGAATGTGAAAGAAATATTGGAGGAGGCTG 509245 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.8 32 GTATTCCCCACGGATGTAGGGGTGATCCT # Left flank : TTATCAAATAGTTAATTAGGAAGTGGTTTCCATGAGCCGTTACTCAATGATTGTGTCGAAGATTTTTTATAAATTTGCTGGTTTTCACTGGGTTGTGACAATTTTGTCTACGATGATGATCTTGGCACTTTATCCTAAGTTACCTAACCAGGTGCCAACTCACTTTGGCTTGACTGGTGCTGATAGTTTCGGTAACAAGGCACAGGTGTTTATACTGCCGGTTGCATTGGTGATGTTGGGAGTTGCTGTTTCAAGTCATTTAATTGATAAGCAATTTCCTGATTTAACAATCCTGAATACATTGAGTAAAAGTTTGTTGTTGGCTATCATGGTGGTGGTTTGGTACGCAATAGTGATAGCGTTGGTGACTTATTATCGGTTGACCGGGATGAGTTGGTAAGGATAGAATTTTGATGTTGGGATCGTTTGGAAAAGTTCAAACTGATGTAATTTGGTCGTTTGCTAATTTCGAAATGGCGGTATGACAGTGATCGTTTAGT # Right flank : CCATATTAATGTTGTAAAATCCATTAACATCTGATAGTATTGATCCCTTCAGTGTTGCTGGATTGACCTGATCATTAGGGGGCTTCTAAAATGATTCTTCTTATTTTGTTTTTAATTTTTCTCGCTATACTTGGAATGTTGCGATTTATCGTCACATCATTTTGGTGGATTATGTTAGTAATTTTAGTTCTCGTGGGAATTGACTTTTTAAATTGGATGCTAAGCAATACCATAACTAACATTATTTTTCTTATTTTATCACTCGGATTGATCGCTTATTCGGTAACCAAAATAATAAGAAATCATCGTGATAGAAAAAAAGTCACTCAAAATCATTTAAATTCACATTCAAAATAAATATTTTCCTCCGATCAGGGGCTTTATTTGGCACGCTCTAAGAACTTAAGTGCGAAGGGAACGACAACATGGGCCAAATTATCAAAAGTAGTGAAGAATTTAAGGTCGTTGTTTTAATTACTGAAGCCCATGTCATTCCCACT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGGATGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 701914-703018 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS422984.1 Lentilactobacillus raoultii strain Marseille-P4006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 701914 29 100.0 32 ............................. TGCCCGCCTATATGCCGAAACCTCGTCTATCA 701975 29 96.6 32 ............................T CGTTGAGCGTGATGTTCTTGACAAAAATTTTG 702036 29 96.6 32 ............................T AAGTTTGTCTTGAATGTCCGAGTTATCTTTGA 702097 29 100.0 32 ............................. GCAAGCTACTTACACAAGTTGCTGGTAGCCTA 702158 29 96.6 32 ............................T GAGTGAAGATGAAATGCTTGATCGCTTTGTCT 702219 29 96.6 32 ............................T ACTATTAAATGCTGTACCGACTGCATTTAAAG 702280 29 100.0 32 ............................. CCTTGTTAACATTTTCTAGTGTGTGCTCACTA 702341 29 100.0 32 ............................. CAAATATAGGCTTTGTAGTCCCTGTCAAAGGT 702402 29 100.0 32 ............................. CATATGAGCAATGCCGAAATTATGATCGCCAA 702463 29 96.6 32 ............................T TGCTAAAACAAAATCTTGTTTATTGGCAAAAA 702524 29 100.0 32 ............................. TCGCAATCACTGAGCGCTTCACAGGCAATTCG 702585 29 100.0 32 ............................. GAGGGATGCTGGTTAGTCCGGGGGCTATTCTT 702646 29 96.6 32 ............................T GAGTTTGGCACAAACGCAGCCGCCGTATTAGC 702707 29 96.6 32 ............................T ATCGGATAACCAGTACAGCGTGCCAACCGGCA 702768 29 100.0 32 ............................. GTGGCACAAGACGTACTAAATGCTTTCACATT 702829 29 89.7 20 ...........A...........G....T TGAGATCTTTTTATGTATAT Deletion [702878] 702878 28 72.4 21 ...........-AGG..G.....G.C..G GATTTTGGGTTCGGCCGTACG Deletion [702927] 702927 29 79.3 33 .......T....G....GA....G....T TAGGCGTTTGCTTAAGGTTTCCTAATTAAATTC 702989 29 82.8 0 ........T...G...........C..GA | G [703012] ========== ====== ====== ====== ============================= ================================= ================== 19 29 94.8 31 GTATTCCCCACGTATGTAGGGGTAATCCC # Left flank : AAATATGCTTATATAAAGGGGCATGAAGGTGAACCAAAGCAGAGCTTTAACTTAACTGAGGGTGAGCGTAAATATTGGCAGTCAAAGGGGTTATTCCGGTCAGATAAAGCGGGCACAGTAGAAGTTACTAACCCGCATACCTATTCAATGGAGCGGACTGATCAAGTGGGGTTATTTAAATATAAGCAGTACACCAGTGATATTTGGGATATCTGGAAAGCTTTATGGCCGAGTCTTTGGGATTGACAGAGAGCTCAATTGAGGTTTTTCCTAGATATGTGCAGGAACCTTCTTTAAGCGTAGCTACTTTATAATTAAAAATGAATAGTTTCACAAGACAATGTTTAATCGATAAAAGTGGTGCGACTTTATTATCTAAAACTTTAGCTTAGATAAAATTGTTTGAATTTTGGTGAAATCATTAGTAGGTAGTTGGCCAAACTGATAGAAATTGAGTGTTTTTTAATTTTAAAATGGCGATACAATGGGATTTATTTAGT # Right flank : AATTTTTGGCTTTGCTATAAAGCATTCTCTACTACGAAGGTGGCAATCATTTTTATAAAATACCATTAGGGGCTGTATTTTTCTAGCAGTTGGCTGTCAAAAAATGTATTAATTGCAGCTGGTTGGTAGTGGAACGTGCTAAACATCTTCGAGACTGGTAAGGTTTTAGACTTGCCGGTCTTCTTGTGATACATGGATTATGGCTAAGTGTTTTAAAAACATGTAGTTCCGAAAATTAGATGTCGATGGTCTTTCATTTATTAGATTGACACCTCAATGTCTGGAATTAATAGCTGGAGGTGGGTCTAAATTAATGAGCAAACGAATCAATCAGTCGTGTTTAACAGTTAAAAACTACCACAACGATAATCTTACTGGGACTTTTAGATAACCTGACCAAATTATGATAGTTACAGAATAATTTTGGCGGAGAATTGGAACTTTATAAACGCGTTTGCGGCAACAAATTGTGTATCTTAAGCCTTAAAAGCTATCCTGAA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTAGGGGTAATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 714805-716485 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS422984.1 Lentilactobacillus raoultii strain Marseille-P4006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 714805 29 100.0 32 ............................. GACACGTCTATGTATCACCATATGATACGTGA 714866 29 100.0 32 ............................. TCTTGAATCTTTCGGTTGTGACGAATGTAATA 714927 29 100.0 33 ............................. GAAATGTTGTTTTCGTCATGGTAGGGATCAACA 714989 29 100.0 32 ............................. AAGGCAATGGCAAAAATTGGCGGCCGGTTGGC 715050 29 100.0 33 ............................. CAACAATTACAAGCTAAGGAACAAGAAATTCAA 715112 29 100.0 33 ............................. CAAACTGCCTGCGCCTATCAAGTCTGCGATTGG 715174 29 100.0 32 ............................. ATGACAAATTAATATTATTCAATCGAGTAATT 715235 29 96.6 32 ............................C ACGGTATGAATCTAGTTGCTACAACTCAGATG 715296 29 96.6 33 ............................C CTGTTTGTTGAGTTCCTTGTAGTTTAGATGTGG 715358 29 96.6 32 ............................C TGTTAAATATGACCACCAATAGTCAGCTCTTC 715419 29 96.6 32 ............................C ATTCTCCGCATCAAATCGCCATCAAAGGTCAT 715480 29 96.6 32 ............................C ACGCAACGGAAAAGAACAAATACCAAGCAAAA 715541 29 100.0 32 ............................. GATAACGGGGAAGTCAGTTGATTGGCTAATCA 715602 29 96.6 32 ............................C CGCTTTTCTCTTGCCTAGTTGTGGTGAACGTA 715663 29 100.0 32 ............................. TGATTATATGATATTACGACTTCGCTAAGCCA 715724 29 100.0 32 ............................. GTCCAAACGGCTAAAAAGTTGGCGGCCAGTGT 715785 29 96.6 32 ............................C AATGCTGCACTTATGTGCAAAGACATCGTAGT 715846 29 100.0 32 ............................. TTGCTCTTAAAGGCGAGGGCTCAGATAGTAGT 715907 29 100.0 32 ............................. ACTCATTCTTAAGCCCCCTTTACCGAACTGGC 715968 29 100.0 32 ............................. AATGGTTACCGGTTGCCCGGCGAACTCGGGTA 716029 29 100.0 32 ............................. CAGTTAATCAGCGTTGGGGTTGGTTATTTAAA 716090 29 100.0 32 ............................. GTTCCAGACCCTTCTGATGGCGGAGCACAAGC 716151 29 100.0 32 ............................. GGTTACTAATTTCCCATCAGTTTTTGAAAATA 716212 29 100.0 33 ............................. TTTTTGCAAGAGTCGCCGCCAAGTTATCGATGG 716274 29 96.6 32 ............................C GATTAACCCGTTTAGCAACTTGATTAATCGTC 716335 29 96.6 32 ............................C GGGTAATGCCAATTTTATCAGCATCCCGTCAA 716396 29 100.0 32 ............................. TGTTGTGGCAAAGAACTTAAGTAAGCTTTTGT 716457 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.8 32 GTATTCCCCACGTATGTAGGGGTGATCCT # Left flank : ACCAAAGATGATATTATTTCAATTGGAGCAGTTAAAAGGCTAAGTAACGGCGAAAATGACCACTTTTATCGCCTAGTCCGGATCAACCATGAAGTACCTAAAAAGATTACGACCTTAACGGGAATTTCATCAGAGATGTTAGAGTCAGAAGGAACGGATTTAGAGTCGGCTTTAAATGACCTTTCAATCTTCATTGAAGATGCGACGGTTGTGGGTTATAATTTGAAATTTGATGAGTTGTTTCTTTCGGAGAGTTTTAAAAAAGTCAATCAACCGGGGTTGTCTAACTCGATGCAGGATTTAATGCCAAAAGTGAAAAAAATTAATCAATTTCTTGATAATTATCGACTGGAGACTGTACTGCAAGCATATGAAATTAAAAATCCAACCCCACATCATGCACTTGCTGATGCTCAAGCAACACTTAATCTGGCATTCAAACTCATGGAAAACGGGGATTTGAAAATTTGAGAATGGCGGTATGACAGGGATCTTTTAGT # Right flank : CCGGATGTAAATTTTACTTCGTGGACCTTTAAAGTATTTCCCACGGACGTGGGCACAATCTACCAAAAAATAAGCCAAGAGTTGTCCTAAACAGACATCCCTTGGCTTATTTCATACATAAAATTCTCACTCAATTCTTGTCTGAACTGCCTCATCCATCGCACTTTCGCTCAACTCTTGACCGATCCCAGGTCGATCGGGAACTTGAAAATAGCCATTAACTGGCTGATCGTCATATTTAGCACTTGACCGAACTTGAGATTTCAAGCTAATTTCATGATGCTCATGAATAAGTGCATTGGGAATAACGGCTTCCAGTTGCAGGGCAACTGCCGTGACAATCGGACTACCACAAACATGAAATTGAACGTCAATGTCATTTGTATCGGCCATATCGCAGATCTTTTTGGCTTCAGTAATACCGCCGCAAATTCCGATATCCGGCTGGACCACGCTGAGTGCCCGATCCTTGATAAAAGGCTCAAACCGAAATCGGGTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 737828-739629 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS422984.1 Lentilactobacillus raoultii strain Marseille-P4006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 737828 29 96.6 33 ............................C ACATTTACAGCTGCACAGACATTCAGTATTGCG 737890 29 100.0 32 ............................. ATCATGTCGTGGTCTCACGCTGATCTTAGATT 737951 29 96.6 32 ............................C AAAGCTATTCAAGCCATTCCTCAACCGGACAC 738012 29 100.0 32 ............................. ACTTCACTTGGCGGCCGGTGTGGATGTACGCT 738073 29 100.0 32 ............................. GAATTCCGGATCCTTACCAATTGGGCTGTTAG 738134 29 100.0 32 ............................. GTGGTCGCACTATTAACTTTAATAATAATGTT 738195 29 96.6 32 ............................A AATCTTCAAAAAGTTGGCAAACTAGCAAAAAA 738256 29 100.0 32 ............................. TTCAACAACAGGAAATGTAAATTCCGCGCTTG 738317 29 100.0 32 ............................. ACCCGATCATCGGCCAATAATGCTTCATCTAA 738378 29 96.6 32 ............................C AATTAGCGCTCCCAACTCCCCGTACGGACTTC 738439 29 100.0 32 ............................. TATACGAGAGTCCGTTTGAGTCGATGCTCACG 738500 29 100.0 32 ............................. TTCATCAATATTAGCGATTCGTATTTTGGTTT 738561 29 100.0 33 ............................. CATCAATTATGTGCATCATGATCACCTCTCTTC 738623 29 100.0 32 ............................. CCGGTCATTGAATTGGTCGCATGCAAATTAGC 738684 29 96.6 32 ............................C CTGACCAGTGCCGCTTCCCTGAGAGTCTAAAG 738745 29 100.0 32 ............................. CTGTGTTTGGTTAATGCGGTTTTTACCGTTAA 738806 29 100.0 32 ............................. ATAACTACGGTTTGCAAATGGCGGCCTATAAG 738867 29 96.6 32 ............................C TTTTTCGGACCAAATCGGTAAAAATCGGACCA 738928 29 100.0 32 ............................. GTACTCATCGGCGGTGTCAAAGTCCTTTTTGC 738989 29 93.1 33 ......TT..................... TGCAAAAGTTCGGATTGCGGAATCGTGACATTA 739051 29 100.0 32 ............................. TACAAGCCGGCTTATGACTCAGGATATCTGCT 739112 29 100.0 32 ............................. TCGTCGGGCCAGTCCTTTGGCACCTTCCAAAA 739173 29 100.0 32 ............................. CTGTAAGGTGGCCGTTGACGGCTGCCAATTGC 739234 29 96.6 32 ....A........................ ATCAACGATTCTGAGCAACAACCGCCACTAAA 739295 29 100.0 32 ............................. TAATTACTCGCTGGCGATTGCAGTAGGCGCGG 739356 29 100.0 33 ............................. CGCACTGCACTTTGAATTCGAGTAAACGCGTGG 739418 29 96.6 32 ............................C TAATAGTCAGCGAAGTAAACCTGTGGTCCAAT 739479 29 96.6 32 ............................C TTTGATGCGGTGTGTAACTATCCGGCTCAAAA 739540 29 96.6 32 ............................C ACTGCTTCTGAAAAGGGATCGGCTCCAGAATG 739601 29 89.7 0 .........................ATT. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.3 32 GTATTCCCCACGGATGTAGGGGTGATCCT # Left flank : TTTGCCAGAGCCGTTGTCAGTGGGTCGACAATTGATGAAACAGATGATGTTAAGGCCAGTAAGTTTGCACTGAAACGCTATTTGTCAGCATACCTGCTCGCTGAAGACTTTAACAATTTGGAAAAGAAAGATGCCAGCATTTTGAACAGTAAGAACATTTCGGAATGATGGAATCAATGAATAAGGCAATGAAATCTCGGCTTTGAGTTGATTAACCAGATTCGATATTAAAGTAAAAAGTGGGTCACAGTGTAGTTAGCGCTGGGCCCATTTTTGTGTTGCTAAGAAACGATTACAATTACTTACATATTTAATATCTCAAAAAATTCGAAATTGTTCTGGATTATGAGTGTTTCGTCTGTAATAATGGAATTAAGATCATGAAATGATTGGGCTAGGTTTAAAATTCAAATGGTTAAATCGGGCACACCGTGAAGCAAAGTGATGGAAAATGGTGGTTTGCCAATTTGAAAATGGCGGTATATCAAGGATCGTTTAGT # Right flank : TTTGGAGGGAGGGATGATATGGACATTAAAGTTTTAAATCAAGCCACTATAGAAGAACCGGCGTGGTTGGCAATTCAACATCAAATTGAGTCGTTCGATTGGGGAGGCGCTAAGTTTATTGCTAAAAAGATGCTAGGGCCAATGACACCTCAGGAACGTCTGATTGTTGCTGTTGAAAAAAAGCGAATTATCGGTGTCTGTGCAATAGTAGAGAAAGATATTGCCGACATTCCTGAAACGCCGTTTATCAGTACTGTTTATGTCATGCCTGACTATCGAAATATGCATGTTGGTACACAAATGGTTAACCGGGCATTAGAAGTTGCAAGAGGACTTCAATTCGGGGAAGTTTATATTATTTCTCGGTTGAGTGATTATTACGAACAGATTGGATTCGAATTGGTTAGGATGATCAAGGACTTTATGGGCAGAGAGATGAAGCTTTATCGCAAGCAAATTTAGCTAATTAAGAGGTTCTTATTGAACTTTGACGCTACATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGGATGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //