Array 1 130323-130019 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSDR01000010.1 Clostridium sp. AM58-1XD AM58-1XD.Scaf10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 130322 33 100.0 35 ................................. CCATTCCGGAGTTGATAAGTCGATCACGACCTTCT 130254 33 100.0 33 ................................. AAAATCAAAGCAATACCAAGATCAGCAAATAAT 130188 33 100.0 35 ................................. CTCATACCGGCAAAATGTAACCCGCTTGTTTGTTC 130120 33 97.0 34 .......T......................... GACAATACCGTAGGGAATGTGGGCCCGGTATACG 130053 33 84.8 0 ..................AA.A......A...G | AA [130029] ========== ====== ====== ====== ================================= =================================== ================== 5 33 96.4 34 GTCACCACCTGCGAAGGTGGTGTGGATTGAAAT # Left flank : CGTATTTGGCTTTTAGCTCGTCGTGC # Right flank : TGCTCCTGAAATTTTGTTTTGTCCAGATATGTAAGCTGACATTTTCAAAAGACAATATCTGACACATCCATTTCTCGCTCATTTGTATTATTATATTCTAGAAAAGTCAACAAACAAGAAATTAAGAAAGCCCCTTTCCATAAAAATTACCACATAGTAATTTTTATAGAAAGGGGCTTTGGAGCTACGAGTTTTACAACTCTGAAAACGTTATATTATGGATCATAATCAGCAAAATCCAATAATATTTCCATATACCGCCGTTCTTGTTATATCCAGTAAGATACCTTTTCTGATATCCGCCCAATCCGCTCATATGTGATATGGCGGCAGAGCCAGTCCGTGAATCGGCCGTATTTACGGTAGAAAATATTGAACATCAGGTATGGGAGCCATTGAGATTTGGCCCTCGGCATACGGCGGAATATGTTTTTCCAGGAATAGATGTCCTTATAAATTTTCTTATATCCCAGAAACAGTTCCTCCGGCGTCATATTTGC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCTGCGAAGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 176363-176131 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSDR01000004.1 Clostridium sp. AM58-1XD AM58-1XD.Scaf4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 176362 33 100.0 33 ................................. TGTAATAACCGTTGCCGGATTGATCGCCGGTGC 176296 33 100.0 33 ................................. AGCAAAACGCATCCGATTACAGTTTAAAACTTG 176230 33 100.0 34 ................................. TCAAAATCAAACGAATATCCATTATATGTACGAA 176163 33 84.8 0 .................T.A.A...G...G... | ========== ====== ====== ====== ================================= ================================== ================== 4 33 96.2 34 GTCACAGCCTGCGAAGGCTGTGTGGATTGAAAT # Left flank : TATTACTTTTGCAGCATCCTCTGTCTTTAAAAAAGTAAAACGGCGTTTTTTCAGCGAAGTGCCATGTTCGAATTCTGATAGCAATGAGAAGGTATAGTTTATCTATGGGCATATCTTTTCTTCTGTACAAATTTCCTGTATAATGAACAGAAGACATGAAAGCGTATCAGTGATTATCATACTTTTCGGGTTACGAGCAAAAGTTTGATGCAGAGTGATGTATTGAATGATCGAAAGCCAAAGTGCCTGTAAAGATGGCGAGAATAAGTAACCGACAAAAAAATTCATTTTATAAATATCCTTTATTCTTAAAAGAGGGAAAAGTCAATGGGCTTTTTGGTGCGAACCCCAAGTAAACATAAATACTCAGGAGATTCGCACCAGAATAAGTGGCATGATATTTAAAATAAAACAGGTATGTGGTATAATAAGAACAGAAAATTGTGTATTATGTATGATATTGGGATAAGAATTGCCTATGAGAATTATGCACAATTGCT # Right flank : ATAGCCACCAGCGCTGTATATGATGGCTGTAACGCATTGAAGTGTTCATACTTGCTCCGTACTGCCGATGGGACAGTATCACAGCCTATGAGATGTAACTTGAGGTCTAGGCAGATTATTAACAAGTCAGATTATTAAAAAGAGCAGAGTATGATAAAATTTCGTAATCATACTCCGCTCTTTTCAATTTTGTTAATAAACCGAACCATTATTGTTTTGTTTTTCCTAACTCGATGGCATAGTACCCTCGCTTGATTAAGACAGCAGTTGCGAACGAGGAACGGTTATGATCCTTTCAACTGCCTGGCTTTGGCGAGGTATTCCATATATTTTAGCATGAGCATTTCATTAATTAAAAAGTACTGTGACGTCATGTAAAGTTCATTGTCCCAGTTATCCGTTTTTACCAGGTGATTGTAAAAGAAAAGGCTGATATCGCAGATTCTGGAAAGGGAGTTGTTTCCCACTCTTGTGACGGAGATCGTGCGGCTGCCTTTTTT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGCCTGCGAAGGCTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 17492-17854 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSDR01000050.1 Clostridium sp. AM58-1XD AM58-1XD.Scaf50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 17492 33 100.0 32 ................................. CGGCTGTGGTCAGTCATGGAGGATATTTCGGA 17557 33 97.0 33 ................................A GCCAGAGGTCGAATCCAAGGCCAGTATACATGG 17623 33 100.0 35 ................................. TCAATGGTTATGGGCATCATAGGACTGCTCACAAC 17691 32 97.0 34 .........-....................... ATGGATACGTTGCCCCACAAGTCACGGCAATAAA 17757 32 93.9 33 .........-......................T GTTCAAGCTATACCATTTTCTGGTCCAGGGATT 17822 33 84.8 0 ...G.C............AC.....C....... | ========== ====== ====== ====== ================================= =================================== ================== 6 33 95.4 34 GTCACTCCCCTTGCGGGAGTGTGGATTGAAATG # Left flank : AACGGCCATGATGATGTGACGATCCAATATAAGCCGTCCGTGTTGGAAGATGTGAAACTGTGGCTGGCAGAGAATAATTATCCGATGAGGATTCCCTACATAGATTCCAAAGGAAACAGTAAGGCTTGTACAGTTGTATACCAGGAGGTGGCGTAATGACATATCCAATCAATGCACAAGAATTTGCAAATAACTATGTTAAAGGCCTTAGTAAGGCGGAATATGCGGACTGGAAAATGGCAAAAAAACTGATTTTAGCTATCAATCAGGCCTATTTTAAAGGAGTGGAAGAGGGAAGAAGAAAAGCACTAGGTATTAATTAGGTAGTGATGTTCAAGGTGCGAATCCTAAACGCACATGAAAGTGCCGTGAGATTCGCACCTTGAAATGGGTATCTGTTTTAAATAGATTATATCAATTTAATTAATTTACAATGGTTAAATAGTGCAGTATATATTAAAATATGCTATAATAATTAGGCAAATATAGTAAAATTTGCT # Right flank : CGGTAGCTGGATGAAACAAAAAATTAGAACG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCTTGCGGGAGTGTGGATTGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 88% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //