Array 1 32063-29898 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCPX01000056.1 Salmonella enterica subsp. enterica serovar Kentucky strain PRK860 KENTUCKY_S4_trimmed_contig_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32062 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 32001 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 31940 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 31879 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 31818 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 31757 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 31696 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 31635 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 31574 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 31513 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 31452 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 31391 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 31330 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 31269 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 31208 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 31147 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 31086 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 31025 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 30964 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 30903 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 30842 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 30781 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 30720 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 30659 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 30598 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 30537 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 30476 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 30415 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 30354 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 30293 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 30232 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 30171 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 30110 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 30049 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 29988 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 29927 29 96.6 0 ............T................ | A [29900] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5137-6384 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCPX01000138.1 Salmonella enterica subsp. enterica serovar Kentucky strain PRK860 KENTUCKY_S4_trimmed_contig_179, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5137 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 5198 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 5259 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 5320 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 5381 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 5442 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 5503 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 5564 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 5625 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 5686 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 5747 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 5808 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 5869 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 5930 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 5991 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 6052 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 6113 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 6174 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 6235 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 6296 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6357 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //