Array 1 71182-74341 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012196.1 Campylobacter gracilis strain ATCC 33236 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 71182 36 100.0 37 .................................... TTTAAACCAATCGCTCCAAAGATAAACTTTATGAACG 71255 36 100.0 37 .................................... CTATAACGGTAAAGCCGGTTTTCATGAATTCCTTAAG 71328 36 100.0 37 .................................... TTTTAAACCAATCGCTCCAAAGATAAACTTTATGAAG 71401 36 100.0 42 .................................... TTTATAGGTCTTAAATTTCGCAATAAAAACCTGCTCCATTGG 71479 36 100.0 40 .................................... AAAACTCCCATTCGCCACCTAACGAGTAAGCGCAGTTGCG 71555 36 100.0 38 .................................... GACTTGGCAAAAACCGCCTTCGGTTACTTCGTTTAAAG 71629 36 100.0 39 .................................... ATTTTTCTCCTTTAAAAAGGACTTTCTTTTTATCTGCAG 71704 36 100.0 40 .................................... ACCGTTCTCGAGTCCGCTCCAATTGGCGAACCACACCTCG 71780 36 100.0 41 .................................... CCAATTCGCCCCAATCCTCGTTAAGGAATAAATCTTGTCGG 71857 36 100.0 37 .................................... ATATTAGCACAAAAATCAGTGTGACCCTCATTTATGG 71930 36 97.2 40 .................T.................. GTCGTGCTCAAACCTCTGTCCTAAATGAACCTGTACCATG 72006 36 100.0 36 .................................... AAGTCTCCTCTTTGCCCGACCTTTCCGACGAGCAAG 72078 36 100.0 42 .................................... CTCACCAAGTATTTCCCATTAATCAACACGGATGGGATATAG 72156 36 100.0 41 .................................... ACATGCACCCTAGTTCAGCCTTCTTTCTCATTTTATTCTCG 72233 36 100.0 45 .................................... GATGTCTTGTATCTCTGAAGTTGTTACGTTTCCTAGTACTCTAGG 72314 36 100.0 38 .................................... CAGTTATCTTTACTAGCCTCATTATCCTCACATCTAAA 72388 36 100.0 38 .................................... CAGTTATCTTTACTAGCCTCATTATCCTCACATCTAAA 72462 36 100.0 41 .................................... ACTCTGTCATACACTAGGCTATAGAAGTCTTGTCTTTTAGA 72539 36 100.0 38 .................................... CTCAATTATCTTACCCTCTTTAGTGGTTCCGTAGTCCA 72613 36 100.0 39 .................................... AGGTCATCCTCACTCTCAAATATGATGTTCTTAATCATA 72688 36 100.0 38 .................................... GTTAGCTTGTACGTTAATAAGATAGCCTTTAGAGTACA 72762 36 100.0 37 .................................... GCTTTTCTTAGCATCTTTCAGGTACTTTTCTACTGCA 72835 36 100.0 40 .................................... TTTATAAACGCCTCATACCCTCGCCCAAATTTTGCGTCAA 72911 36 100.0 44 .................................... AATCATAGGCAGCACTCACTTCTAGAAGCATTGCTACGTCTTGA 72991 36 100.0 44 .................................... AATCATAGGCAGCACTCACTTCTAGAAGCATTGCTACGTCTTGA 73071 36 100.0 39 .................................... TCCCAACTTTACTGAGTTACGCATTTTATGCTCCTTGAA 73146 36 100.0 37 .................................... GCTTTTCTTAGCATCTTTCAGGTACTTTTCTACTGCA 73219 36 100.0 41 .................................... TTTAGGAAATGCGCTGACTCGTCCGCATAGTGTTTCACCGA 73296 36 97.2 43 .............C...................... GCCTATGCTGTAACTGCTATTGCACTCGCCGGCTGAGATCGCA 73375 36 97.2 41 .............C...................... AAGCCTTCCAACCGATTAGAAGCTCGCCAGTTGGGAGACGA 73452 36 100.0 41 .................................... CTTAACATTGAACTTCTCCGGGTCTATCATCATTGCTATTA 73529 36 100.0 43 .................................... CAGCTTGAGTAAGCTTTTTTGCCATAGTTCTCTCCTTTTACGA 73608 36 100.0 43 .................................... CTCAAAAGAACGATATATCTTTTGGCATCTGTCAGCGTCAGAA 73687 36 100.0 42 .................................... TTTTCGGCTAGAGCAATAGGATTTTGCGCATAATTAGGCTGA 73765 36 100.0 39 .................................... AAGCGCACGATTCTCATACGCATTTACACGAACGCCCTA 73840 36 100.0 42 .................................... CTGACCGTCTTTCTTAACTCCGAAGTCTTTGTCTTTGTTAGA 73918 36 94.4 42 .................T.....G............ CTCCACAGTTTTGATCTAAGATTTTTTCTAATCGGTCTAGTA 73996 36 97.2 45 ...A................................ GTCTGGCATTTTTTCTCCTTTCTGAAAAAGATTAATTTGTTAAAA 74077 36 100.0 39 .................................... ATCGATAAGCCATATTTACTGCCGCAAAACTCGATTTTA 74152 36 100.0 42 .................................... AAGATATGGTAACTTAGCATAGTAAACTCCTTGAATTAATTA G [74180] 74231 36 100.0 39 .................................... GTTAATCCTATCTTTTAGATTTGCCATTGTATTTTCCTA 74306 36 97.2 0 .................................G.. | ========== ====== ====== ====== ==================================== ============================================= ================== 42 36 99.5 40 TTTGATTAGAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : CTTGTATGGCTAAAAGCGAGAGCCTAGGCGAAGGTGAGATCTTTCGTTCCCCTGGCACCTACGTCTAAGTCCCATTTTTAGGGATTTGATTTTCGGACTTTTCTTAAATTTAAAACCCCGAATTTAGCGCACTTTTATATTCTATTAAGCTTTAAAATGTCCGCAAAGCTTAAATTTCGCTCGCGCCAAAAACCCTTTCTCGGACTTCCGCTATTTAGCCTATTTTTAAAGCCCCATTTCTAGGGCTTTTTACGTTTACGAAATTTAGCAGAAATTCGAAAAAGCCTAAAATTTTAATTTTTGCGTTTAGATTTTCGGACTTTTGCGCTTGTGTAAAGACGCTTAAATCCGTACTTTTAAGCCCGCTATAAGTAAAAACCTCGAAATTTGAAATTAATTTTTCGCCTCTTTCTCGGACTTTTTCGCGTTTTGTGATATAATGGCGCTCGCAAATAGTTCTTTAAAAACTCATTGTCAATTTGAATGAGGTTTTTGGGCTG # Right flank : CAAACGGGTTTTGCCTCGTATGATGCTGTATGATCACGCTGATTTGATTAAATTTCAAGATATACGACTAAAATTTAATGGATTTTTTAAAAGCACTCCGTAAATTGACAGAATTTGACAACTAAACTCCTTATAATCACGCTCAAAGTTGATATGGCGGGTTTGAATTCTATGAATAATTTTGTTATTTTTCGAAAAAGAATTTTAAAATAAAGGAGAAAGTATGAAAATTTTGTTTAAAGTGTTTTTGCTTGGTTTGATCGGAGTTATGTTTTCTGGTTGTTTTATCGTAATGCCGCCTGATAAAGAAACGGTAATGGCTCAGCAACTAGATGTTTGGTGTATCCTTAGAGAGAATAAGGATAAGGAAAGATATGAGGAATCTAAACGTAAGGCGGAGTCGTTCCTTGATAAAGATAAATATGGAGATAGAGTTCAAATAGCTCCGAGAGGAGAGTATAGCGTTTCGCTATTAGATAGAGCTTTTAGTGGTGACAATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGATTAGAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 1361758-1362177 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012196.1 Campylobacter gracilis strain ATCC 33236 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================================================================== ================== 1361758 27 82.1 39 G.T.A..T..-................. AGCCTGATAATAACAATACTAAGCCTAATAAACCCGAGT 1361824 28 100.0 37 ............................ TTTCTTCGAAAGGAATTTCTCCGCCGGTGCCCCAGGT 1361889 28 96.4 37 .....C...................... TCATCGAGCAGCAGCTCTTTCGTATCCCACTTTTGGT 1361954 28 96.4 39 .......................A.... TTCTGCCACTGCATTTATAGCGTCCCGTAGAAATGTGGA 1362021 27 78.6 100 .T.....TG.-..T....A......... GCCTAAATGGGCTTATTGCACGATTCGCGTAGGAGGTAGAATTTATCTTGTTGAAATCAAAACGGATTTACGCGATACGCCTTTTGCGGCGGAAATGGGT 1362148 28 75.0 0 ...........T...ATAA....T...A | T,C [1362155,1362163] ========== ====== ====== ====== ============================ ==================================================================================================== ================== 6 28 88.1 51 AGAATTCCATCCCGTTGGGAATTGAAAC # Left flank : GTGGACAAGCCGCGCGAGGTCGCACTTGCCGAGCGCGAGGAGGCGGTAAAGAGCGAGCTGAAGAATTATTTCAAGCCCGAATTTATCAATCGCCTGGACGACATCGTGATCTTCAACGCCCTAAACGAGGACGATCTCATCAAAATCGTGGGCATTATGTTTAAGAGTCTGCAAAAAACACTCGCAAACCGCGGCATTAACGCGAGCCTAAGCGAAAATGCCAAAAAGCTCATCGCCTCGGCGGGCTTTGATATCGAATATGGCGCAAGGCCGCTACGCAGGGCACTTTACGATCTAGTGGAGGATAAGATCGCCGATATGATCCTAAGCGACGATATCAAAACCGGCGATCGGATCGAAATCGGCGCGCGTGACGGCGAAATAGAGATAAAGAGGGCAAAGTAAAATTTAGCGGAATTTATCCTGCGGGGTAAATTCTGCGCTTCTGCTAAGTAAATTTGGCGAGATAAATCTAATACTTTATTAATATAAATTGGGCG # Right flank : AAGATTAGTTGTGGCTGGGATAGGATACAATATGGGGCACTTATATGAAATTTCATTCGGTTTCAATTCGCCTACTAAATATGTTAAATTTATGGATTACTAATGAAATTTTGGAGTTACTCACAAATTAAAATTTTAACGAACTGTATATTTGCCGCAATATAAATAGATTTAAATGCAACTTATTTAGTAGCAAATTCCAAAATATTTGTAAAAATGCACGCTAGGGATCTTAAAAGCTAAGTTAAAGTAAGAATTCCGCATTAATTTCAATTAAATTTACGCTACAAATTTAAGATCATGTGCCAAAGTTAGAATTTAAAATTAAATTAGATGATACCAAAGAGGCAGAAAGATGGAAAAATTTTTATAAAGTAAGAATTTGGCAACAACCTTTGAAACTGCAAAACAAAGAATATCGGCGTGCTCGTCATAAAAAGGAAAAATCATCTAAATTTAATGGATACTACTGCCTTTGCTACATAAAGTATAATAATTAA # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATTCCATCCCGTTGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 1363490-1363846 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012196.1 Campylobacter gracilis strain ATCC 33236 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1363490 30 86.7 33 T.C.C...T..................... CAATCCGGGCGTTCGTATCGGAAGTGAAAACGG AT [1363500] 1363555 30 96.7 34 ........T..................... AGCACAAATGGCACGCTAGCGATATAAAAATACC 1363619 30 93.3 37 ...T....T..................... TGAGCGACCGCTGCCCGATCGAGGTGAAAAGGGTAGG 1363686 30 100.0 35 .............................. CGCTTCGAGTCTGCACGCCGGTGGCCTTTGCTTGG 1363751 30 100.0 36 .............................. ACTACTGGAGCGCATTTTAGGGCATATAAGGATATG 1363817 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 95.6 35 GTAGAATTCCATCCCGTTGGGAATTGAAAC # Left flank : CGGCGTGCGAGATCTTTTTGCCGTTGTTTTTGGCCTCGACGGCATTGTGCAAAATGTTGAATATATCGCTCGTTTCTAACATATGAAAATTATACAAATTTATTCGTTAATTATACATAAAATCGTATAAAATGAATAAAAATCGTGTTATTCATAAGTAAAAATAGCAAAACGCTTCGTTTATCCGTATGAATTATACAGAATACTGCATAAAATAAACATAAAATTTTATAAAATTTTGCATATTATGCCGTAAAGATGAACCAGCTTGCACAAACAGGCATATTACAGAACGGCACATTAAATTTTAAAACGGGGATAGATGAAATTTTACACATCGAAGCTTTTGGGGTTTGATTTTTTTTGATCGGTTTTGGCAGCAATTACAAACAAGATGTAATTTTACCCTATGCCGAGCCATATCTGCCAGTACAAAGAGCGTTTCAATTCCTAGTGGAATAGAATTCTACGGAAAGGCGGTGAATGCGGGATATGTGAGT # Right flank : TGCTCTATTTAAAATTTCATCTTTTCCTCTTTCATAGTAGCATTCTATAGAATTTATCGAGCCAAATCCTACCCGATAAAAATTTTTACCAAACAAAATTCCGGCTTAGATTTTAAAATTTATCGAGCAAGGTTCTGCGCCTCAGAGCTTAGAATTTTAAATTTAAGAAGCAGCGACTTCAAGCTGCGTGGTTCGAAACACGAGGATTTTAGATTATAAAATTTTGAAAGGTCGGTAGGATTAGAATTTTAAAATTCAAAGTCAATGATCGAAATTCCAAACCGCGCAACTTGAAATTTCAAATCTGAAGCGGAAGCAAATTTTAAGATCGTTCCAAAATTTACCTCTTTTAAATTCACATATCTCAAGCTCTATTCATAAAATTTTACGTATTAATTTACGTAAAATTTAGCTGAAAAACAATGCTAGTATAAGCTTATCCGCATTAAATTTTATCTCTTCTTTTTAGAATAAAAACCGCCACGGACGCGATTATTAGC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAATTCCATCCCGTTGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 4 1377705-1377474 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012196.1 Campylobacter gracilis strain ATCC 33236 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1377704 30 100.0 37 .............................. AAACTTCTGCTTCACTCATTTGGAAAACAGATCCAAA 1377637 30 100.0 36 .............................. TATGGACGACAGCCGCAGAGAAAAGCAAGCGACGAA 1377571 30 86.7 34 .........T..T..A..A........... GTGATATACTTCATCACGTAGCCCGTGGCGTTGT 1377507 30 86.7 0 ...............A..A......T...G | C,ATA [1377477,1377484] ========== ====== ====== ====== ============================== ===================================== ================== 4 30 93.3 36 GTAGAATTCCATCCCGTTGGGAATTGAAAC # Left flank : AAATGCAGCGGGACAGAGCTTAACCTGGCGTCAAATCATCCGTCGCGAGGCCAATCAGATTAAAAAATATGTCTGCGAAGGCGTGCCTTACGAGGGGTTGGTATGGCGGTAGGTTGGGCCTTCAAGTTTAAATTTATGTTTTTGAAATTTTGACTAGAATCACTTGCGCCTATAGATTGCGCCCTCTTAAGATGCATGTGCTTTTGAAATAAATTTGATCTGAAGCACGGAACGGCGAACGAATTGACTTTAAAAATGTATATGCTTTTGAAATTTTGGCTTTTTATTATTCACACTTCGATTTTTGAATATCTTTATATTTAGATTTTAACATTTGCACTCACGATACATATAGATAGCGATAAAGTTGCTTTTAAGATTTTGAAATGCCTAATTTTGGGCATTTAACAATCGGCGCTTTTTTAAATTTAGTCCATTTTAAGGCATAAAAATATATACTCCTAACACTTTCTACCTAGAAAAATGGCAAAATTCGTGCT # Right flank : AATCTTGAGGTCACAATCATAGAATTTAATGCGTTTCTATATATTAGGAAATAAATTCCTAATGAGCAATTCCTGGCAAGCAAATCCTCCCTAGCAATTCTTAGCGGATAATCTTCATTGGCAAGATTCAGCCCTTTTTCTTATCCTTCTTGTTCTTGCGAGAGGGGCTTTCCAGCTTGCGCCAAGCCTCGCTTTTTTGGCTATCCTCCATTAGCACTATCTCCCTGGCGCCGTTTCGCACGAGGTTTGGATCCACCGCAAGCTCCTTCGCACCAATTTTTTCGGGATAGTCTATGCGCGAGAGTATGCAGCGGAAGGCGTTTAGCCGCGCGATCTTTTTGTCGTTGCTATCAAGGATTGTCCACGGCGCAAACTCGGTATTTGAAGCAAGCAGCATCGAGTATTTTGCGAGCGTGTATTGATTCCACAGCTCCTGCGATCTCGCATCCACCGGCGAGAGTTTGTATTGCTTCAGCGGGTCGGTGCGGCGCGATTCGAAG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:0, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAATTCCATCCCGTTGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //