Array 1 1352668-1348091 **** Predicted by CRISPRDetect 2.4 *** >NC_021235.1 Limosilactobacillus fermentum F-6, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 1352667 29 100.0 32 ............................. AATTGAGCCCTTAGGAGTTTGAATCTTAGGTA 1352606 29 96.6 32 ............................T CAAAGCCAAGACTAGCTAAGGCTTGCATGACG 1352545 29 100.0 32 ............................. TGTAGATGCTGCACTTACTGGAGATTCTACTG 1352484 29 96.6 32 ............................T ATCACTGCTTCGACCGTTACAGCAGATTCAAT 1352423 29 100.0 32 ............................. TACGTTACTGTTACTGATTTAAACAATGGATT 1352362 29 100.0 32 ............................. TTCACGTCCCGCGCGGCTTAAAGGGTGATGTT 1352301 29 96.6 32 ............................T ACAACGGTTAATAACGTGGAAGCCTACCGCAA 1352240 29 100.0 32 ............................. CGGGTAATGTGATTATCTGCGTCTAAGCCATT 1352179 29 96.6 32 ............................T GTATTATGAAATGTACACCGAAGAAAAGGGCG 1352118 29 96.6 32 ............................T AAGTGGATTAGTCGATGCAATTGAAACTTTTC 1352057 29 96.6 32 ............................T AATTGCGGAATTGCCGTCCGGGTCAACCCAGC 1351996 29 100.0 32 ............................. GTTCGACGAGTTTGACAATGTCTTGGTCGCCT 1351935 29 100.0 32 ............................. TTTTCTGGGGATAACATTGAAGATGGCACCAT 1351874 29 100.0 32 ............................. TTGGTTGGCGTTAATGGTTATTTTCATTTTAC 1351813 29 100.0 32 ............................. TGAGCGGACGTGTAGTAACCAGTTAGCACCGA 1351752 29 100.0 32 ............................. ATAGCCCACTGACGCCAACGGTTGTGCCAGGC 1351691 29 100.0 32 ............................. TACAAGACCGATAAAAGGGCCGTCCAATTCCA 1351630 29 100.0 32 ............................. GACGGGGCGCAATCACCAAAAACCAGGAACAA 1351569 29 100.0 32 ............................. TTATTGAAAGCAATTCCTGCAAATGAAGAAAA 1351508 29 96.6 63 ............................T ACATTTACAATTCAACTGATGAAACAGGATAAGTGCTCCCCATGTTGGCCCCGTTCTAGGTGA 1351416 29 96.6 33 ............................T AAATCGATCAATAGCATTGCTAACGAAAATGTT 1351354 29 100.0 32 ............................. ATATACGAAGCGGGCCGGTCTTGCGGCCGAAT 1351293 29 96.6 32 ............................T ATCGTGGCGAATGATTGCCACGGTGTCACCTA 1351232 29 100.0 32 ............................. TACAAGGATATTCACGGTCATACAACCTATAA 1351171 29 100.0 32 ............................. TTTAGCACCATTGTTACCGGCAACTTCTTTTA 1351110 29 96.6 32 ............................T CGCGATTTTTTTCAGTATTAGGTGTAAAAAAG 1351049 29 100.0 32 ............................. TTACTATTAAGCTCATCAACAGTCTTATTTAA 1350988 29 100.0 32 ............................. ATTTTGGCCTATTATAGTTATATTATTTCCTG 1350927 29 96.6 32 ............................T GAAACATTGTACCCATTGACTAGTGGATAATA 1350866 29 96.6 32 ............................T TCACAATTCACACTTCGGGCAAAAGCGGTGGG 1350805 29 100.0 32 ............................. CCGGATACTGATTCGGTTCTTTACGCGTTAAA 1350744 29 96.6 32 ............................T TGCACAACAGTAGCAGTCTGGTCAGGCTCAAT 1350683 29 96.6 32 ............................T CAGCTCTGTTAGAGTCCTTGGCTGTATGGCTG 1350622 29 100.0 32 ............................. TAACTACAAACTTTGTTCCAAGCGCTGAAGCT 1350561 29 96.6 32 ............................T ATACCTGAAGATGAACTATCTGAAACCAACCA 1350500 29 100.0 32 ............................. TATTATCTACTGATTCAACTGGTCAAAAAGTA 1350439 29 96.6 32 ............................T AACAAGCGTACCAGTTTTGAGAACATTTTCGA 1350378 29 96.6 33 ............................T ATAGACCGGTTGTTCACGGCTGAAACGTTCTTG 1350316 29 96.6 32 ............................T ATCGAAACGATGGACGACTTCTTCGACGCTCT 1350255 29 96.6 32 ............................T TGTGCTGAGAATCGTGAACAGGTAACAGATCC 1350194 29 100.0 32 ............................. ATTATTCCATTGAGTGCGGAAAATACCTGAAG 1350133 29 100.0 32 ............................. TACCTATTATATGGTTAGAAAGGGTATGGTTA 1350072 29 100.0 32 ............................. AACATGGAAAAGATTAAATTTACTGAGTTACA 1350011 29 96.6 32 ............................T CACCCCTCAATGAAGTAGACGCCTGTCTTGTC 1349950 29 96.6 32 ............................T TACCATTCCACGCACGAAGGGGTGGAAGTTTT 1349889 29 96.6 32 ............................T TTGACCAGACATCCCCAGCCGAACGGGATATG 1349828 29 100.0 32 ............................. CAGCCTGAACAATCGTAGCAACAAAGAGGGCA 1349767 29 100.0 32 ............................. TCTATCCGCCATCAACGGGATTGGCGATCCTA 1349706 29 96.6 32 ............................T GGTTGATTCAATCGGGTGCTTTAACAGCACTC 1349645 29 96.6 33 ............................T GGCACGTATGAAGCTGATCAGCTAAACGAGGGA 1349583 29 100.0 32 ............................. TAGCAACCACATCAAGCCATTAGCAATCGCTA 1349522 29 96.6 32 ............................T GGTTCTGGGCCATGATGTAAATACGATTGGCA 1349461 29 96.6 32 ............................T TCATCGCCGTTCCACTCAACCTCCTGATTATA 1349400 29 96.6 32 ............................T GAAATGGAACAAAGTTTCCATGATACCATTAA 1349339 29 100.0 32 ............................. TATGTAAATAAGTATAGGGGGTAAGGATATGA 1349278 29 100.0 32 ............................. AATGCTGATTGCCTAGATCCTGGTAGACATCT 1349217 29 96.6 32 ............................T GCAAAAGATGAAGATGATCAAGCGCGGGGCCG 1349156 29 100.0 32 ............................. TTGGTTGGCGTTAATGGTTATTTTCATTTTAC 1349095 29 100.0 32 ............................. TGAGCGGACGTGTAGTAACCAGTTAGCACCGA 1349034 29 100.0 32 ............................. ATAGCCCACTGACGCCAACGGTTGTGCCAGGC 1348973 29 100.0 32 ............................. TACAAGACCGATAAAAGGGCCGTCCAATTCCA 1348912 29 100.0 32 ............................. GACGGGGCGCAATCACCAAAAACCAGGAACAA 1348851 29 100.0 32 ............................. TTATTGAAAGCAATTCCTGCAAATGAAGAAAA 1348790 29 96.6 32 ............................T ACATTTACAATTCAACTGATGAAACAGGATAA 1348729 29 96.6 32 ............................T ACCATGTTCATTAGTGTTAATCGTTGCATTCA 1348668 29 96.6 32 ............................T CGCATCGGCACAAGTCGGTCTTTACGCCCAAG 1348607 29 96.6 32 ............................T ATTTTCTACTAACATAAGCCGGTATACTTGAC 1348546 29 100.0 32 ............................. AATCGCACATTGTTATCACTCTTGCCAGGCCA 1348485 29 100.0 32 ............................. TGCTCCATCAGTTGTGCCATACACAAAGCTCG 1348424 29 100.0 32 ............................. TACGTTACCTTTAACATTCCACGAGGCGCTCA 1348363 29 96.6 32 ............................T TGGCGGTCTATTCTAGTTTTATTATTTTGCTT 1348302 29 100.0 32 ............................. AACATGGAATACAAGATTAAATTTACTGAGTT 1348241 29 100.0 32 ............................. TTAGACTACTTATATAAACTAGCCGACGACGA 1348180 29 100.0 32 ............................. GAACGGGGCACAATCGTCACAATCCAGGAACA 1348119 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= =============================================================== ================== 75 29 98.5 32 GTGCTCCCCATGTATATGGGGGTGATCCC # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAAGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGGTTTTTGAAGATTTGAAAGTCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TCTAAGGAGTGATATGGTTGAGAGAATGTACGGCCACTACTACTCACCAACCACGGTTTCAAACATCACTAAGCGGACGGAACACCTGGTTGAAGAGTTCCACGAGCGCAAATTCAAGTACTCACAGTACGTCTGTGTGTTCCTCGATGCTACTTACATTCCGTTACGCCGTGGTACCATTGAACGAGAAGCCGTTAACGTAGCGATCGGAATTCAAAGTGACGGCGGTAAGGAAGTTCTTGACTACAGTATCGCACCGACCGAGAACGGAGCCGCTTGGTCTGAACTACTCCAGGGATTACGCGCACGGGGGATTAAAGATATTCAGTTGTTCATCGCCGACGGTTTAGTTGGACTTCAATCTGCGATTGAGGCTAACTACCCGCAGGCAAAGTTTCAACGGTGCTGGGTCCACGCAGAGCGCAACCTGTTAGGGTACGTTCGTAAAAACGATCGCAGGGAGATTATCACCGACTTTAAGGCTATTCGGCAAGCAGAGA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //