Array 1 79060-77834 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXO01000005.1 Neisseria subflava strain C2011033015 C2011033015_S30_ctg_1825, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 79059 35 94.4 30 T.......-........................... GATACTTGTAGCATATCCAAAGAAGAGGCA AG [79055] 78992 36 100.0 30 .................................... CACTCACAGGGAGACCGCAGGAACAGACAG 78926 36 100.0 30 .................................... CATAATAAGCCGCGGAATCTGCAACTTGGG 78860 36 100.0 31 .................................... ACGACAACATCGATGAAGCTGTTATCGCACA 78793 36 100.0 30 .................................... TGGTTGAAAGATATGGTGACATTTCCCGGC 78727 36 100.0 30 .................................... AGTAAAACAAATGGTAACTACAGAATTAGA 78661 36 100.0 30 .................................... TAGGTCATGGATAATGACGGGTATATATGC 78595 36 100.0 30 .................................... ATAAATTACTGCTAATTTAAGTACCCTCTT 78529 36 100.0 30 .................................... TAAAAGGATATGCGATAGCAGAACTACAAC 78463 36 100.0 30 .................................... GCCAGATCTATAGCCTTGGCGAAATCACTA 78397 36 100.0 30 .................................... TTTCAATTCCGGATCTTCAGCCATCCTTAG 78331 36 100.0 30 .................................... TGCCCAACACTACAAAGGCAATCGGAATAA 78265 36 100.0 30 .................................... TACTCCAGTTCTACAAAGACAATCCAAGTT 78199 36 97.2 30 .......T............................ AATCTCTTGGCGAGCGTATCACGACAGTGC 78133 36 100.0 30 .................................... ACTGCCAAAGACGTTAAAAGACACCAGCTT 78067 36 100.0 30 .................................... TTGCGACAGCCACAATACCAAACGGATTTG 78001 36 100.0 30 .................................... CAAAGCTTTTCCTATTCGCAATCCCAACAA 77935 36 100.0 30 .................................... GCTGATAAACGTACCGACCGACACCATAGC 77869 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TGACATTAGGTTCCAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGTAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCAAATTAATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTA # Right flank : ACTTCGATGGGAAATCCTTATTCTATAAGGGTTTCCCGTTTTATTTTGTCTAATAAAATGAGCTTAAAATAATAATAGTTGGTCGGAATTTACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGCAGTTTCATGGTGGCATATTGCTTTTCTGTTACTTCCAAACAGCGGATTGAACCTTCTTGCGGTAGGTTTGCACATAGCCTATTGTGGTGTTTTTGCAACGAGTCTCGACCTTTGACAATACGGCTGTATACAGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCTGTGGTGACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAGTTTCAGCTGTTTGGCGTTTTTATCGGTTACGCTGGCTTGAAATGAGGAAATCATTTTGTCTATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 32556-34496 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXO01000001.1 Neisseria subflava strain C2011033015 C2011033015_S30_ctg_1817, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 32556 32 100.0 34 ................................ CAGACCCGACAAACCAGTCTTTGCCTTGCTTCCG 32622 32 100.0 36 ................................ CGCACGAGAAACAGCAAGAACTTGAGAGCAATCATG 32690 32 100.0 34 ................................ CTGTTGATAGGGCATAGTTGCGACCACCAACCGA 32756 32 100.0 35 ................................ CAGATGACAACGTCGCCCGGTTGCGGCGTGTCGGT 32823 32 100.0 38 ................................ TTGGCTGACGGCATGGTTTGTGTATAGGTAAAGCTTGG 32893 32 100.0 35 ................................ AACGTTGACTGTTCCGGCAAAGCCATATTCATGCG 32960 32 100.0 34 ................................ ATGGGCTCAGTTGCAGAACCGCGCATATCGGCAT 33026 32 100.0 35 ................................ GTCCTTTATGGGATATAAATTGTTAACAGGCTTAG 33093 32 100.0 34 ................................ ATGCGAGCTATTCGGCTACGTTGGCCGTCAATAA 33159 32 100.0 36 ................................ TTGAGCTTGTTTTTCACTAACACCGCCTTTACTTAA 33227 32 100.0 33 ................................ CGTAGTCTGCACTTATAAACACAATCCCAAAAC 33292 32 100.0 33 ................................ CCACCTTTGACCGTAAAATCTACCTTTGCCAAC 33357 32 100.0 35 ................................ TTCGGTAATAGTGCTTGTCACGTCACCGATACCAT 33424 32 100.0 35 ................................ TTGCTATTCTTCGCAAGGGTCGGCAATTAAGGAAA 33491 32 100.0 35 ................................ GTGTGTGGCACGAATAAAAGTATCTTTTGAGGCGT 33558 32 100.0 35 ................................ TGGAGCAACGAATGGCGAAGTTATATGCGGAAATT 33625 32 100.0 36 ................................ GGGAGTGACAGGGCCAATGGTTACAATAGTACCGGC 33693 32 100.0 35 ................................ TTTCGCCTTGTCATAAATTCGCGCATAACAAGATG 33760 32 100.0 33 ................................ AAGAATCACGCTTGTGGTAGGTGGGCAGGAAAG 33825 32 100.0 34 ................................ AGACGGTAACTGTGAAGCTCAGGAATATGAACGC 33891 32 100.0 34 ................................ GGTCAATTCGGTACCCATCAGCTACCGATGTCTT 33957 32 100.0 35 ................................ ATATAATAAAGCTGGCAAAAGTTATAATCCCCAGT 34024 32 100.0 35 ................................ TACAACAGTATATGTAGAGTTTCCATTTGCGCGTG 34091 32 100.0 34 ................................ AACAGTTAAGCAACGGCCAACGAAATAAACCGTC 34157 32 96.9 34 ...........C.................... ATAAAAAGCTATCAAAAAACAGCGCGGACAATCC 34223 32 93.8 8 ...........C...............A.... AACCAGCG Deletion [34264] 34263 32 84.4 31 .G..TT...A..C................... CGCAAGGGCGATATGATCGTGATTTCCAACC C,AA [34266,34273] 34331 32 90.6 35 ......A....C...T................ CGCCCATGATGCTAAAGCAACCTTGGAAAAGCTTG 34398 32 78.1 35 A.....A....CG..TC..........A.... TCTAGCAGCTACAAACTTTATGCCAACCTATCCCG 34465 32 78.1 0 T....A.....CG..A...........C...T | ========== ====== ====== ====== ================================ ====================================== ================== 30 32 97.4 34 CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Left flank : GCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAAGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAATATTCGGTGTTCGAATGCGACATCGCGCCCGATCAGTGGGTTGTTTTAAAGGACAAACTCTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATTTAGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTATTTAAGGATACATTGATTGTGTGAATCGCCAACTTGTGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTTGGATTGTTCTTTAACAATCAGGATATTGCGAATGCAGGTGTAACAGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTCGGGAGCTTAGCGAAATCGGGGCTGTGAAACCTGACAGAGCAAGGCTTTTGAGAGGGGCT # Right flank : TATCGTCCAAGCAGGCCGCTCTTCTTTTGATCCTTCGCTTTCCGAGGCTTTAGTGAAAGCGGTGGGGGATATTAGAAGCAAGTTATAAAGGTTAATCAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTTATTTACATATTAAATTTAATATCATATTATTATTGCATAATATCAGTTTGAATTTTTTAGAATTTCAATATGAAACCCTTAATTTACTACGCCCATTCTGCCCAAGATAAACTCAGCAATCTCTTGCTTTACGAACATTGGCAAACCTTGCAAAGCCATTCGGTCAATGTTGGTGAAGTGGCGGCTGAGTTTGTCCGGGTATTTGATGCGCAGGAACTTGCCTGCCAGACGGGACAGCTGCATGACTTAGGGAAATATTCAGTAGCCTTTAATTACCGATTGCATGGCAGCCCTCAGTCAATCATGCTACCGTTGTAGTCAAAATTGCAAAAACGCTTGCTTCAGGGTGGGTTCCAAAGTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //