Array 1 3734-6507 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRUZ01000019.1 Corynebacterium diphtheriae strain HC07 scaffold_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3734 29 100.0 32 ............................. TGGAATTCTGCCTTGAAACGCTGGGTTAGTCA 3795 29 96.6 32 ............................G AAGATTGACCGTCTATCCGAGGCTGTACAAAA 3856 29 96.6 32 ............................G TGCTTGTAGGCGGGTGACATCGCCGCGAAACG 3917 29 96.6 32 ............................G CACCCGCAAACTTTGACCAGACCGGCACCCTC 3978 29 100.0 32 ............................. GGGATTAAATCTAGGCGACTTTGTGCAGGTGG 4039 29 100.0 32 ............................. ATTGGCTTAACTCTCAACCTATGGAGTTCCTG 4100 29 100.0 32 ............................. ATTGGCTTAACTCTCAACCTATGGAGTTCCTG 4161 29 96.6 32 .....T....................... GCCGCGTTTCCAACGACCAATCACCAGCCGCT 4222 29 96.6 32 ............................G AATGCCGGAAAAGAAGCCGATTTTGTTTACAC 4283 29 100.0 32 ............................. AGGGCATTGGAGCTATGCGCTCCATCGGCGCC 4344 29 100.0 32 ............................. ATGACGGATGAGCAGTACCAAGCCGCTACTGC 4405 29 100.0 32 ............................. GACACGGGCTATGACACCCTCTGGGACACCAG 4466 29 96.6 32 ............................A GCTTCGGAGAGTCCGCAAAATCATGAGTAATA 4527 29 100.0 32 ............................. CTGAAGTGCACCGCATGCCCCGTCGCTCACCT 4588 29 96.6 32 ............................A CACCCTCGGTGGTAGTGGGTTCCCCACAGCAC 4649 29 100.0 32 ............................. ACCCTCACGGCGGTGACGGGTGCGACTGAGAA 4710 29 96.6 32 ............................G CAGCAGATCATGCTATCCATGCTGCGTGACCT 4771 29 96.6 32 ............................T ATTGAATACGCCGCTCAGTGAGCGTGATCGTG 4832 29 96.6 32 ............................G CATTCGAGGCTGCCGCCTAAGCCCCCAGCATG 4893 29 96.6 32 ............................G CACACCGAAACCGCTTATTTATCGGGTAAGAG 4954 29 100.0 32 ............................. ACGGGATTTGCGCGCCGTTCAGGAGCTTCTAG 5015 29 96.6 32 .....T....................... CCGCTGCGATTCGACCCCGCTGCCTTGCTTGC 5076 29 100.0 32 ............................. CAGTTTTCACACCCCGAGTGTTCCACCGAGGT 5137 29 96.6 32 ............................T CATCCCGCAGGGTGAGGGAATCAAGCGAGGAA 5198 29 96.6 32 ............................G CTGAGCTGGATGCCGTGGAGGGCATCCAGGAG 5259 29 100.0 32 ............................. CGCCTTGGGATAGTTTGATGGTGGGGCCACGA 5320 29 100.0 32 ............................. TTTCCGCAGGCCGTTACGTTCCACGGCGATAA 5381 29 96.6 32 ............................G AATTTGTGGGCGCGGCGTTTCGTGAGGCTCCG 5442 29 96.6 32 ............................G AAGGGGCAAGCAGGTGCGGTTACAGTAGCTGA 5503 29 96.6 32 ............................G CCGTCATTGCCGACCACAACGAATCTTCGGAA 5564 29 100.0 32 ............................. CACCACGCCGCACAGGTCGCTGGCTGTATGCG 5625 29 96.6 32 ............................G CTTCTGATCTTGCGGCGCTACGCCTACGGGTG 5686 29 100.0 32 ............................. CCGCGAGTCTATGTCAAAAGCAAAATTGATGC 5747 29 100.0 32 ............................. CGGCAATTACAAACGTGTTAGTTTTTCCAGCT 5808 29 96.6 32 ............................G TATGAAACCTTTGCAGACCTGTTCACGACGCA 5869 29 100.0 32 ............................. CAGCAACCCGTCCCCAGATCGACCGCTGTCGT 5930 29 96.6 32 ............................G AAAACCAATACTCCTACAGCTGGAACGACCAA 5991 29 96.6 32 ............................G CCACGGGGGATAGTGCCTCAGCTGCGAGTACT 6052 29 96.6 32 ............................G CGTCTAAATCCGATCCAATTCTTGTGCTTTCC 6113 29 96.6 32 ............................G TGTGACGCCGGTAAAAATGCCGATGGCGATAC 6174 29 100.0 32 ............................. GACAATACCGAAGGGGTTTAATAACATCGTTG 6235 29 100.0 32 ............................. AAGACGCCCCACATCATCTGTTTTTCCGAGGC 6296 29 100.0 32 ............................. ATTGTGCACAATTCTTGAACTAATGGAGGAAT 6357 29 96.6 32 ............................G AAAACCAATACTCCTACAGCTGGAACGACCAA 6418 29 89.7 32 .............T.............TG TTGTTAACGGATCCACGAGACACACCCAGTAT 6479 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 46 29 97.9 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAAAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAAGACTAAGCAAATTTGGGTGAATAGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGTCTCTAAACATGCAGCTTGATAAGA # Right flank : CAGGGACTTTGAGAACTGGACCGCCGTGATTCCCTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGAATCTGTGTTTTTCATTCAGAGAAATCAGTAAATGATGGCTCTACTAAAAAATTTTGAAAAAACTAACTTTTAATATCTATAGAGTGTATTCTGTGGAAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGATGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //