Array 1 731118-730360 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040843.1 Leptospira weilii strain CUD13 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 731117 29 100.0 32 ............................. TTAGCTACAAACAATATATTGGAATAATCTGA 731056 29 100.0 32 ............................. GTTCCTTGAATGAAAGATTTCCTATTTATGAA 730995 29 100.0 32 ............................. GAGGATTGAATATGAAACTAAGTTATCTTACA 730934 29 100.0 32 ............................. GTGTAAAATTCAATCGAAATAGGGACAACAGA 730873 29 100.0 32 ............................. AAATTGATCGAGTGTAATATCAAGTTGCGGCT 730812 29 100.0 31 ............................. GCATCGTGGTGTGTCCGCTACGCATAAAGGC 730752 29 100.0 31 ............................. GCATCGTGGTGTGTCCGCTACGCATAAAGGC 730692 29 100.0 32 ............................. GAAATAAAATCATTCAAATACCAACTTCAGAA 730631 29 100.0 32 ............................. AGAGACATCTTCAAGAATATCCATTATCCAAA 730570 29 100.0 32 ............................. TTTGGAGTTGATTCTTATGTGATGCAACAGGT 730509 29 100.0 32 ............................. TTCTCATCAAAAGCGTCCTCGCCGGTGTAGAT 730448 29 100.0 32 ............................. GAGTTTGTTTTGATGTCACAGGTTTACAAAAG 730387 28 89.7 0 ....................-.....T.A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTTCAAAAACAATGCATTCTGCTCTATGCGCAGCCCTCATTTCTACTCAATGAATCTGACTTAGAAATTGCGATCGCCCTCACAAGTTTAAAATTTATAGATCGAAGGATAAACCTATTCTAAATTTTTTTATAATATTCAATTCATATAATTCCGATATACATAATATTATGGTAAATAATTCTTCCCTTTCTAAACAAATTTGTTCCCACCTCCTTCAAAATGATCGGTTCTTTTTCTTTGGATCCGAAATTCGTTTTCACGACGATTTGTTTCACGAGATAATAGATTTTGAAGGTTTATCTTTTATACCCAAGCTAAGTCCGAATCGAAACCAGAAAGAACCTTAAATGATTCCGTTCTTTCAAGGTTTCTTGAAGGGGACGGTTTTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAACACAAGACCGATCATACCTTTAAAAATAAACTCTAAGCTGACATAGTATGTAAAATACTATACGAACTTTTAGT # Right flank : AAAATGACGAGAATAAAAACCTACCTTCGTTAGATTGAGAATTTTTACAACGTAGAAATGATGAATGTGGCTTTAAGTTTTTGATATTTCTGTTTTGGAAAAATTTCACTTTCTCAAAGTTGAAAGATAAACTTAGAAATTACGATCGGAATATAAAGAATATATCTTAAAAGTCCTTTGTTAATCCCGAAACGAAACAACACTTTTCGGAAGTCAAAAAGTTTGAAAAAGGGAACTGGTGAATCAAAGATAATGATGATTTACTAATTTATGGCGCATCGGAAATGATGAAATCGATATGCGAAATCTTATTGTCGTTTTAATTTTTATCGCAATTACCTCTTCCGGTTTATTGGCGAAAACTTCCGATTTCAAAGGCGAATGTAAACCAAAAGAATGGATCTGTATTCTTACCCGCAACGAAAATAACAAAGTAGAATTTTACGTCCAAAACCAAACACCTTCGGGAGAATATCCTTTTACAATCTATTTCAATTTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1111186-1109940 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040843.1 Leptospira weilii strain CUD13 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1111185 29 100.0 32 ............................. AACGATTTACAATTGCTTTATCGATACCGCAA 1111124 29 100.0 32 ............................. TTTAGCGGCATCTTCTAAAGTCAATCCCGCAT 1111063 29 100.0 31 ............................. GTATATGAACCATTCTTTCATTTGGAATAGA 1111003 29 100.0 32 ............................. AGAACAGGTGGCATTCGTGCTGATCTACGCTA 1110942 29 100.0 32 ............................. GGAGAAAGTGCGTTCAATCGCATTGGGAGAAG 1110881 29 100.0 31 ............................. CGCACCGGCCTCGATCCGTTCAATCGTCAAA 1110821 29 100.0 32 ............................. ATACAGCGATTACATTCGGATTCAGTATTTTT 1110760 29 100.0 32 ............................. GAATTATTACATTGCTTCCTAAAGATTTTGAA 1110699 29 100.0 32 ............................. ACATCATTTGAGCTGCCTTACGATAATCCGCA 1110638 29 100.0 32 ............................. AAAGTTTCGATATGTTTGTCGAACCCTTCGGC 1110577 29 100.0 32 ............................. CGCAGGCTTCTTACTGGAAAGCTGAAGAGATA 1110516 29 100.0 32 ............................. ATAATTATCAAAAATAATTATTACATGGTTTT 1110455 29 100.0 31 ............................. GAAGAACAGCTGAATTAAAAAATGTGAATAC 1110395 29 100.0 33 ............................. GAGATGGCATTATTAAAGTTCAAACTCCTCAAC 1110333 29 100.0 32 ............................. AATGAGGCAAACTATTATTTTGTTTAAAAAAT 1110272 29 100.0 32 ............................. TTTCATCTCCCATATTTGATTTGTGAGTTAAA 1110211 29 100.0 32 ............................. GGACATTCCGCCAAATAAACAGATTAGATATT 1110150 29 100.0 32 ............................. TTATGAGAGAGTGATTTTATTTTCTCAAATTT 1110089 29 100.0 32 ............................. GAGTCTGAGTAGTCTATTTTCATACGGACTAA 1110028 29 100.0 31 ............................. CAAAATGCTCACGTGTGAGCATTTTGAAAAC 1109968 29 79.3 0 ............T.....A....A..ATT | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.0 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : AGATATACAAGACTTTATAGAGACAGCCCATTAAATACAAACGTGATTTGCCATATTTCTCCGGAAGTGGCTTAATCATCAAAATAGAGTTGTTGAAAAATTCTATAGTTCCAATTGACAAAACCGCTTCAATCGGTCGTTTTTATAAAACAAAAACGGATGGAGTATTAATTTTTCAACAATTCTACTTATCTCCACATATTAGAGTGTCCAAAGTTCCGCGTCTAAAACGCGGGGTTTCTGCTCAAATGAACGGTACTTTATTTTATAGGGATCAGTAATATTTTTAGACAATCTGCTTAGAGGTTTTTCACACTTTCAATTGGTTTTAAAATAAGGCATCTTACTTTCACTCTTTTCAATTTCGTTTTTGGTTTATTGGGCTTGATTACGGTTACGTTTCACACGTTCTTAGTAAGAGGCGATTTGCCATCATAGATTGACTCGAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGCTTTTAGC # Right flank : TTCAGTCAAAACAAATAAGGACGAAACAGATGAGTAATAAGAATTCGGAAACGGAATCCAATTTAGAATTTTCAATGTAAAAAAACTAAAAACCAGTTTCAAAACCTGAAAATGTAGGAACTCCCACCAATTTTAAACAAGAGGGAAAACCGCACAAAAGCGGTGTAAACTCCAAGGACGTAATCTATGGGAACTCCCACATTTTTTTAAAAACTTGCCGGACACGAAAGATATTCTTTGAAGGTTTCGAGATGAACTCTAAGACAAACACAATACGGAATCAATTCAAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAACTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGCTTGAGATACCTTCCAACCGGATTCGGTAATTTTCACAAGAGTATTGTTTTGATCCAAGGATTCGAAAATCATTTCCGTTTTGGTTTTGTACCCGCCAACAGTTAGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //