Array 1 41338-41488 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021674.1 Levilactobacillus brevis strain SRCM101106 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41338 29 96.6 32 ............................T GCGTATTATTTTGTTTTCTTTTCTTATTCATC 41399 29 100.0 32 ............................. ATTGGTTGGGACTTCTTCGATACGCATACCGG 41460 29 86.2 0 ......................CAT.T.. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 GTATTCCCCACAGGTGTGGGGGTGATCCC # Left flank : GGCACAAAAAGAATTGGCGGAGCGCTTAAATTTGACGGCGCAGTCAACCGCGGAATTCGTTCGGAAATTGGAAAAAAAGGGATTCGTGACACGAATGAAATCTCCTACGGACCAGCGAGTTACCGTGGTGAGTATCACGGATGCTGGGCGCAAGGAAACAACGAAAAATGTGCAACAAATCCCGCCATTCTTAACGATTTTAGATGATACGGAGTTGGATCAACTCGCGCATATTTTAGATAAGGTTAATCAGCATATGTATGAAGAAGTTAATGCCGCTAACCCAACCTGGTTCAACAAGTTCCATCAGGTCATTATGAATCGTATGTTATCGCAATTACATTCAGGCGAAGATCGGTAGGCTTGGTGTCAGTTTCGGCGATATTTATGGGGGCTGGTTTATTTGTTAGACAACCATGACGACCTGCACTCAGAAGCAAAGTGATGAGAATCGCGGTATTGCTAAAATGAGAATGCCGGTATAATAGGTTTTCTTTAGT # Right flank : CGCTACTTCCATAAACTACTAGTATTAGCGGAAGTAGCGCTGTCACAAGCAAAGAACTACCACAACTTGCAAGGTAATCAGGCTCAAAAACCACCGCACAATCATCAGCCATTTGGCCTAACAATTGTGCGGTGGTTTGTAGTGTCGAGATTATTTTTAATTAAGCGGCATTTAAAATCCACAAGAACAAGACGAAGACAACCGCCAGCCCGTACATCATAGCACCGACTTCCTTACCACGCTTAGCAGCCAACATGGTCAAAGGATAGGTGATGAAACCTAGTGCGATCCCATCGGAGATGCTGTAGGTTAAAGGCATTCCCAGCACAATCAGAAAGGCCGGAGCAGCTACTTCGAATTTTTCCCAATGAATGTTCTTTAGGGATTGGGCCATTAGCACCCCAACGATAATCAAAGCGGGGGCGGTGACTTGATCCGTCACAACTGCCAACAATGGAGAGAAGAACGCGCCAAAGATGAAGAGTATCCCAGTGACGATG # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 156456-157878 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021674.1 Levilactobacillus brevis strain SRCM101106 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 156456 36 100.0 31 .................................... TCCGCTGATGTTTATTCCAACGGTACAAAGT 156523 36 100.0 30 .................................... GAACTACTATTCCTACATTAAGGCACAGCA 156589 36 100.0 30 .................................... AGCTCCATGTAAATCAATAACGTTTTCATC 156655 36 100.0 30 .................................... AACAGCTACCGGTATTAAAGCAGGCACAGT 156721 36 100.0 30 .................................... CCTGTTTCTTTTGGGGGTAAAAATGGCTAT 156787 36 100.0 30 .................................... AGGGGCATGCAGAACAGCTTAAACGAATCT 156853 36 100.0 30 .................................... TCTCAACCAGCACACCATTCGATGACGGTA 156919 36 100.0 30 .................................... TTGTCACGCACAGCACCAGTACGAGCTAGG 156985 36 100.0 30 .................................... GCAGCTTCTTTAAAAATGCGTTTGGTTCCT 157051 36 100.0 30 .................................... TAATCACGATGGCAATCATTCGTGACCGTA 157117 36 100.0 30 .................................... TCACGGAGATTAAGTCTGGCGGTGACGTCA 157183 36 100.0 30 .................................... AACAGTTTTATTCCCTTGATCCCGCATGCG 157249 36 100.0 30 .................................... TTTCAGGTAAGGCTACCAAGGTAACCCATA 157315 36 100.0 30 .................................... TAGACACTGTAATGAATGCCGTCACTATGG 157381 36 100.0 30 .................................... GCCAGCTGTATTAACTCATCCGGCGTGGCT 157447 36 100.0 30 .................................... TTTGTTGATTGCCGCTTTGGAAGGAATCTC 157513 36 100.0 30 .................................... AAGTTCCAAAGATTTAAGCAGTCAGTTTAA 157579 36 100.0 30 .................................... AATGGGTTGAACAGCAGTGTTACCAGCTGG 157645 36 100.0 30 .................................... GAATCAAGTAAATGGGAACGCTGTTCCTGT 157711 36 100.0 30 .................................... TCATTGAGGCGTTAATGTATAAACCGCCTT 157777 36 100.0 30 .................................... GCCAAGAAATCAACGACTACATCGAATTTA 157843 36 91.7 0 ...........................A.C.....T | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.6 30 GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Left flank : AAACGTGGATTTAAATGCGTTATTTCAACGAAAACTGCAAACGAGGTTGTTGAAAGTCTTAGCTGATGATCAAACGGTGGGCTTAGTGGATGGGCTGCAATCATTGCTATCTCAACTATTAGCAGATAGTTACTTGATGGATGTTCCATTGGAGTTGCCAGAGACACCAGAACTAGCAAAGCTGATAAAATTTAGTGGTATTCAACTAGTACCTGATTTAAGAGATGACGTATATGGTATACTAGAGACACTAGTTAAGGCGTTGATAGAACTGAATGATCACCGAATGGTGGTTTTGACCAATGTCGGCCATTATCTTCAGGTCAGCCAACTTCAATCGTTGGTAAGATTTATGGCAAATATTGATTTACCAATTCTTCTAATTGAATTTTCATCCACCAAGCAATCAGACTATTTCAGAAATTGTGACTATCACTACATCGACAGCGATTTTGTGTTGTGGTAAATTCTCAAGGTGAGATAATGGTGTGAAAATGTCG # Right flank : TACCCACTAGCAATGCTGCTAGGTGCTATGGTGTCTTACGATTTTGATAAAATGGCTCATTGATAAGAGCGAGATAACTTCTTTGAAGATATTAAATGACCTTGTAAAAAATGGTCTATAGATCTGTCAATTAGCACCAGTGGGCGTAAACATGAGAGTTCAATTCAACTTGCGAATTGAACTCTTTTTGTTAGCAAACGAATTATCACTAGCTTTGACAGCGAGGTACTTCAGTTAACCTAAACAATAACGGCAGTTTAACCACCAGACTATAAAAAATTGGTAACTTAACAAGACGCGGCATAACTTGAGCGCCCGCAACCGCCACTGCTGATAATGCTCGCCTTTTATCTGATCTCACGTATCCTTAAATCTGTATCATCTCAATCCAATCAACCAGCGTTTAGCAGTCCAAGTGAGTTAGCTGGGCCAACAAAGTGAGGGGCCTCACTCATGTTTAGGCCACCATACCGCGTATGATAGAGACGATAGCTAGAAGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //