Array 1 3947-2538 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGUW01000003.1 Pseudomonas oleovorans strain NCTC10860, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3946 28 100.0 32 ............................ AAACCCCATCGGCGATTGCGTTGACGGTTTCG 3886 28 100.0 32 ............................ TGGCTGACGCCCGTGACCAGCTCAGTGATCAG 3826 28 100.0 32 ............................ ATAGGCGGCCAGTCTTGGGGAGGCAGGGCTGG 3766 28 100.0 32 ............................ TGGGCCTCTTTCATGTACGCGCTGCGCTTTTT 3706 28 100.0 32 ............................ TCCACGGCGCAGGTGATGTAGTCGGTGAGCCG 3646 28 100.0 32 ............................ AGCGAACATGACGCTCCTCAAGGAGGCGCTTA 3586 28 100.0 32 ............................ AGTCCGTTGCCTGCCGAAGTGGTGAAGCTGCG 3526 28 100.0 32 ............................ ACCAGCAAGAAGGCGACCGCAGCGAAGCCACC 3466 28 100.0 32 ............................ AGGAGGTTCCGATGTCAGATGTAACAAGTCCC 3406 28 100.0 32 ............................ TTCCCATCAGAAGCCTTCCAGGTCAGCACCGC 3346 28 100.0 32 ............................ TGGGCGGCAGCCCAGTCGGTCGCCGAGCCCTG 3286 28 100.0 32 ............................ TATAGGGGTGCGCGGCCTGGAGCGCAAGAGCG 3226 28 100.0 32 ............................ TTATGCTGCGGGAAAGTCTCGGCCACGCGCTC 3166 28 100.0 32 ............................ TATGTAGAAGCCGAGGCGCCTGACTGGCGCCT 3106 28 100.0 32 ............................ TTGTCGCGGAAGATCGCCTCGGCCGCTTCCCG 3046 28 100.0 32 ............................ TTGATCTTCGCGGCCATCTTCAAGAGCCGATC 2986 28 100.0 32 ............................ TATCCGAAACTTACACAGGCATGAGCGGCGAC 2926 28 100.0 32 ............................ TGCCTGACTGCTGCAGTGGGCTTCAGCGTGAC 2866 28 100.0 32 ............................ CAGCATCACGGCCACAGTCATAGCGTGCTCCA 2806 28 100.0 33 ............................ TACGAGCCGGTATACGTGGTGCGCGGCCAGCGC 2745 28 100.0 32 ............................ TACGCCTGGGAGCGGGGCTCTGTGGACAGCGG 2685 28 100.0 32 ............................ AATCTCAGGCACGCGCTGTTCTTCACGCTGCA 2625 28 100.0 32 ............................ AGGAGGCTGAGCGCAAGCGCGGCCTGACCATT 2565 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AAGCGCTGGATAAGTTGCTGGCGCTGAACTGGCTCAGCGGCATGCGCGACCACTTGAACCTGGGTGAACTGGCGCCCATCCCGGCGAAGGTGCGCTGGCGCTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAGCGCGCCCGCCGCCGCCTGATCAAGCGCCACGGCATCAGCGAAGCAGAGGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCTTATGCCACCTGCGCAGCAACGGCAGCGGCCACAGCTTCCGCCTGTTTATCCGCCACGGCCCACTGCTCGACAACCCCACCCCCGGCACCTTCGGCGCCTACGGCCTTAGCACCCAGGCCAGCGTGCCCTGGTTCTGACCCTTTTCCCAGCCCAAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTAGCACCGGAAAAATCGGGCAGGTTCTTTAACAATCAAGCCGTTAGGGTTATTAGGCTCTA # Right flank : CTACAAAAACGCCGGCGCCTGATAAGCGCGGCAGTTCGACCCAGGTTTTCCAGGCCGTCTCACGATCCATGTTCGGGTCGAAGGCGTAGGTTTCCTGAGCCTGCACCACGTCACGGATGATCGGCCAGACTTGGTCGAAATCGGCTGCCTCGATGGGCCGGATGATCAGTTCATCGCTCACTGGTCGTAGCCTTCGGCCAGGTGCAGATCCTTGAGTTTCACGTAGTTGCCGGCCGTGTAGCTGAAGAAGTTGCGTTCCTTGTCGGTCAGCGGGCGCGCCTGTTTCACTGGGCTGCCGACGTAGAGATAGCCACTTTCCAGGCGTTTGCCCGGCGGCACCAGCGAGCCTGCGCCGATGATCACCTCGTCCTCGACCACCGCGCCGTCCATGACGATGCTGCCCATGCCGACCAGAATCCGGTTGCCCAGGGTGCAGCCGTGTAAGGTGACCTTGTGCCCGACGGTCACTTCGTCACCGATGATCAGCGGGTAACCATCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 71244-70018 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGUW01000001.1 Pseudomonas oleovorans strain NCTC10860, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 71243 28 100.0 32 ............................ AGTAGCCAACCCCACGGCCACTGCATCGCCTA 71183 28 100.0 32 ............................ GAGACCTTGGCTGGAGGTGCGTCAACACCCGC 71123 28 100.0 32 ............................ CACGCCATGATTCCGCGGTCGCAGGTTGACTG 71063 28 100.0 32 ............................ GCCTGGATAACGTACACGCCAGCGGACGGAGA 71003 28 100.0 32 ............................ TTGCCGGCTCTATCCAGGCGGCGCGGTGTACC 70943 28 100.0 32 ............................ ACACGCCGAGAAGGGCCGGGGGCGCGTCAACG 70883 28 100.0 32 ............................ AGGTACGCGAGGCGGGGCTAGAGCTGGTGCGA 70823 28 100.0 32 ............................ GAGGCAGCACGGGAAACGGGGCGCAGCTCGGA 70763 28 100.0 32 ............................ GGTGATGGTCAGCCACGCCAACCTGCTCGCTA 70703 28 100.0 32 ............................ CGATGAGGCCCCGCCAGTCGCTGCGTTCTACA 70643 28 100.0 32 ............................ GCGACAGCGCCTTTTGTGCGGCTCCAGCGTCG 70583 28 100.0 32 ............................ GAACACCTGCTCAACGATTCCGCTGTAGTAGC 70523 28 100.0 32 ............................ TATCACTGCAAACAAAGCTGAGCGCAGAACTG 70463 28 100.0 32 ............................ ATCCGCATAACGAAAGAAACACCGGGCGAACA 70403 28 96.4 32 ...........................G TGCGATAGTCAGCGCACTGACGATTGCAAGCA 70343 28 89.3 30 ...........C.............G.C TGCGGAATCGTTGAAGACGGCTGCGAAACT 70285 28 82.1 32 .......A....A.G..C.........G TACGATCTCGGGAATTTGCGTATCTGGGATAC 70225 28 82.1 31 A...........C....C.....A...A ACCAGTGGGGCATCGTCATCGGACGGCTTTT T [70200] 70165 28 85.7 32 ..A.........C...........T..G CATAATCAGGAAATGGGAGGTGAGCCCTGTTT 70105 28 82.1 30 ..A........C.....C..T.....A. AATCGACCGATCTAGGGGCAGACGGGCTAG GG [70080] 70045 28 82.1 0 .......C.T.......C..T......G | ========== ====== ====== ====== ============================ ================================ ================== 21 28 95.2 32 GTGTGCCGCCGTGTAGGTGGCTTGAAGT # Left flank : TCAAAGACGCTTGCGTCATGCCGACAGCTTTTCGCAGTGCCGCGCTCGGCGACGACAGGGCCGGATTTAGGGCCAAGTGCATTGCTGTCTTCGATAAATACCGGGTTTTGGAAACCATGATCGAAACAATTAAGGACGCTTGTGATTGTCATCGCCGTTGATGAGAGCCAAAAGCGTTCGCTGAGGAGATCCAGGCGAGTGTTATCCAAATGGCTCAGCCAAATAGGCTCTCGCACATGGACTGGGAGCCTAAGCCAAGAGGGTATCCAGCAGATGCGCAGCGAGCTTGCAAAGGCAGCGAGTAAAACCAGTGCTGTGGCCGTTTTTGCTGTGCGATCAGGGCGCAGAATGACTCTTTTGTTCTTCTGTGGTGCTCGAACCGATTGGGATGAAAATGGCTGGTTTTCTCATAAATCTATCAGCGCAAAATGCCTCATTGATAGTGACTATTTATTGAAGCAAGTGATTGAAAAATAGAAAGTAATCGCGGATTTATAACA # Right flank : CGTATGTTTCGAGTAGCCCAATAAGCTCGAGTCAGCGCCGTTTTTTGGGGTTCAACAGTGTTGCGCGATAAGCCTCGCCCTTCAGGGCAGTGAGGATGTCAACGATACAAAGAATTACTGACCAATAAACACCGCTTCAACTGCCGCCAAGGCTTGGCGCGCCCCCTCAAGCTCCGGCTGTATCAGCGTTAAGCCCCCCAGGTCGTTGCTCATCACCGACACGCAATCCTGAAGCGCTTTTTTGGCCTCAGTGAGAGCAGCCAACAGAGTAGAATCTTTGGCCTCCGCAGTAGTCGATGCCCCTTCTACTACGCTGAGGCGTTTGCTGAGAACGAAGTAGATGTGCGGGAAAACCAACTCCTGGACAACGCCTGCATTCTTCGCTGCTTTGGCTGACGCTTCTTCGACGATAGAAATCAGCTCTGCCTTGTGGATCGGGTTGAATAGTTGCATGTGGTGGCTCCCAGTGATGAATGCCCCCAGCATGCCGACCATTCCGC # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGCCGCCGTGTAGGTGGCTTGAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [31-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 860340-863359 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGUW01000004.1 Pseudomonas oleovorans strain NCTC10860, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 860340 29 100.0 32 ............................. CGATGCACGCGAGCACGACCACGCACCAGCAA 860401 29 100.0 32 ............................. CCTGATCTCCTACCTAACAACGAGCTTTTGCC 860462 29 100.0 32 ............................. TTCATGGATTAGGCCCCCGAGACCGAAAGAGA 860523 29 100.0 32 ............................. CCCTGCCGGCTCAGCGCGGCCATGGCCTTGGA 860584 29 100.0 32 ............................. CCATGAGCGCTCTAACGTGGCGCCCGCCCAGG 860645 29 100.0 32 ............................. CGCTCAGACGAATACGACGGTATCTGATATGA 860706 29 100.0 32 ............................. ATGGTCGGTATCGCCGAGGCCAACCACGCCAG 860767 29 100.0 32 ............................. GAATCGACGCCAGCAAACTATCGACCGCCGCT 860828 29 100.0 32 ............................. GCGGAACGTCAGGGGTTTGAGGAGGGTTTAGA 860889 29 100.0 32 ............................. GGCTGCCTGGCCTAGCGCCGCGACCGGCTCGC 860950 29 100.0 32 ............................. GCAGCCGGGATTGATACTCACAACCTCAGCGA 861011 29 96.6 33 ............................T GCAAGAGGCGGTGCTCTACGCGCATGCACTGGT 861073 29 100.0 32 ............................. GCCAATGCACAGGGGTGGGTACGCAATCGCGG 861134 29 100.0 32 ............................. CCTGGCGCTTTGCCGGGTTAAGGCTGATGCCG 861195 29 96.6 32 ............................T CCAGACCAGCCAGAGTCAACACCTCCTGACTC 861256 29 100.0 32 ............................. TCAGGCTCTTTCATCAGGGCGCCTAGAACGCC 861317 29 100.0 32 ............................. ATTCAGCGGATAACACCCCTATACATATCGCT 861378 29 100.0 32 ............................. GCATTGCCCTTCGCTGCTGCGAGGCTTTGCGT 861439 29 96.6 32 ............................T TGTACGAAATAGGGCTAATCGATTACCGGTTC 861500 29 100.0 32 ............................. ACTGGCGCAAAACCAGCTTTGACGGCGCTCAC 861561 29 100.0 32 ............................. CTGCCATACATCGCCCAGTTTAGTGACAGGCT 861622 29 100.0 32 ............................. CCATCGAATTGATTTGCCCGATGGTAACAATT 861683 29 100.0 32 ............................. GGTCACGCATTGTCGTCCTCCGGGTGGTAGTT 861744 29 100.0 32 ............................. ATTGCCGACCATTTCAACGATGAAACAAAGAT 861805 29 96.6 32 ............................A GCATCAGCGCGGCCAGGACGATCACTGTCCAA 861866 29 100.0 32 ............................. TACGTGGCCGACCTGGCATATCAGGCAGGGAT 861927 29 100.0 32 ............................. CTAGTAACCAGCTCAGACGCTTGTTCGTGCGG 861988 29 100.0 32 ............................. TCCGGCTCAGCCTTGTTCAGCGCGCGCTTGCC 862049 29 100.0 33 ............................. GTGAACTGCTCCAGGCTGGCATCAACACCGGTC 862111 29 100.0 32 ............................. TTGCTGAAATTCGCGCATCAGGCAGCCTCCAC 862172 29 100.0 32 ............................. TGCTAAGGCGTTGGGTAGCATTATTATTTTGC 862233 29 100.0 32 ............................. AATGAAGTGCCGCCAACGCGACAGGCGCACGT 862294 29 100.0 32 ............................. AGCGCGGACGCTATGCAACACATAATTGATTC 862355 29 100.0 32 ............................. TAGCGGCTCAGGTGTGTCTGCTCAGCGGTAAT 862416 29 100.0 32 ............................. CACACGATGGAAAACAGTTCGCTATGACAAGC 862477 29 100.0 32 ............................. CCCGCAGCAGCTCAACACCTGGCGCGAGCAAA 862538 29 100.0 32 ............................. CTGGCAGTCAGCATCGTGCTGGGCCATCACCG 862599 29 100.0 32 ............................. CCGGCCACGTTCCAGATAGCAATGCCCAGGAC 862660 29 100.0 32 ............................. TTGGGGGACAGCTTGACGACACCCATCGAAAC 862721 29 100.0 32 ............................. TCGGTGAACTTGGCGAGATGCTGGTCAAAGAA 862782 29 100.0 32 ............................. CGTTGTAACTAATCCATCAGGCCCGGTTACAA 862843 29 100.0 32 ............................. ATCATGATTAACCCCTTACCACTGGCCGAGCG 862904 29 100.0 32 ............................. CCGAGCTGGCCAGCATCATCACCGCCCACCGC 862965 29 100.0 32 ............................. GCCACATTGTTACCGGGATCAAGAATGACTTC 863026 29 100.0 32 ............................. TTGATAGACGTTCATTTTCGCAACTTGTGCAA 863087 29 100.0 32 ............................. CACCCGGAATTTCCCGCCCGGCACAGTCGGCG 863148 29 100.0 32 ............................. CAGATTGATGCGCGGGAGGCGCTGGCAAAGGT 863209 29 96.6 32 .................A........... CGCATGGAGACGTTGGTTTTGCCGAACTGGAA 863270 29 100.0 32 ............................. TTCTGCATTTCCTCTTCGTTGCCTTCGCGCTC 863331 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GGAAACCATCCTGCCGCGCCTGTACCGGGAAGCACCGGTCAACTCGATCTGGGAAGGCTCCGGCAACGTGCAGTGCCTGGATGTGCTACGCGCGCTGTCCAAGGAACCTGGCGTGCTCGACGCGTTGTTCGCCGAACTGGGCGATGGTCACGGCGATGCCCGCCTGAAGGCGCATATCCAGCGCCTCAAGGCAGATTTCGCTGATACAGCCGACATCCAGTACCGCGCGCGCCAGCTCACCGAAGACATGGCCGTAGCACTGCAGGCCAAGCTGCTGCTGGAGGCGGGCAACGCCACTGTCTCCGATGCCTTTATCGCCAGCCGGCTGAAAGGCCGTGGCCGCGTCTATGGCACCCTGCCACGCGGTGTCGACGTCGAGGCGCTGCTAGCGCGTAGCACACCGAATCTGCTTTGATACAGGGGCAATCTTTAACAAGGAGAAGTTGGTAGGTTTTTAGCGGCTGATTTTCTCCTTTAAGGAACAATTGGTTAGGCTAAGT # Right flank : CGCTCAAGCCAAGACGCACGAATCCTTAGGAGCGAGCTCTGCTCGCGAAGCTTCTGACTCATCCAGATTCACGAGCAGAGCTCGCTCCTACAGGTCAGGCAGTCAGGCATATTCACCGCGGCGCACTGGTCTCCCCCTGCGCTGTTGTCAGTCCAGAACGATGCTGGCACTTTGTTGGGCCAGTAACGATGCGATGCAAGGAGTGCCAGATGAAAGGATTCGCCGATCTCAGCGAGCAGGCCCGTCGTCTTTGGGCCAAGAGTGACGATGGCTTCGGTCATGGTGTGCTGGCGCATTTGCTGGATGTGGCGGCGGTGGCCGAGCGGATGCTGGCCCATGAGCCTCCGAGTACGCTGGATTGGGCCGCTCAAGCGCTGGGGTTGGAGCGCGAGCATGTCGCCCGCTGGGTTGCCTGCCTGGTGGGCCTGCATGACTTCGGCAAGGCCATCCCCGGCTTTCAGGACAAGTGGCTCGCTGGGCGGCAGGCTGATGAGGCGCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 874471-879993 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGUW01000004.1 Pseudomonas oleovorans strain NCTC10860, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 874471 29 100.0 32 ............................. GCCATGGGTGTTCCTTGCGGCAGTCGTGGCAG 874532 29 100.0 32 ............................. TTGGTGATGCATATGCAACTGAGCCGGAATGG 874593 29 100.0 32 ............................. TAGGTGGTTGGTCAATGGGCGATAATGCCTAT 874654 29 100.0 32 ............................. GCGACCTTCAAGGCCATCTTCCCGTCTGGAAT 874715 29 100.0 32 ............................. TTGCCGAGGCCGTTGCAGCGGACGACCCTATG 874776 29 100.0 32 ............................. GACAGGGTGAACAACCATTACTTCCGCCTGTT 874837 29 100.0 32 ............................. GACAGGGTGAACAACCATTACTTCCGCCTGTT 874898 29 100.0 32 ............................. TAGCATCGGCAGAATGTCGCTGGCCAGCCCCC 874959 29 100.0 32 ............................. TCTGCGCGCTTCGTGGCGGCGTACCAGGCGCG 875020 29 100.0 32 ............................. CAGAATCAGGTTGTCAGTGAACTGGTTGTTAC 875081 29 100.0 32 ............................. ATGGTGGACTCTGCCCCTCCCCGGTGCCTGGT 875142 29 100.0 32 ............................. CGCCCTTGATCTCGAGCACCACGGCGGTGGCG 875203 29 100.0 32 ............................. ACCATGAGCACAGTTACACGGGAACACCTGGC 875264 29 100.0 32 ............................. ATATTGCCAAACACGTTGATGCGCTTGCCCGA 875325 29 100.0 32 ............................. GGCCTGCTGGTGCGCGATCAGATCAACGAGCC 875386 29 100.0 32 ............................. TCCATCCTGGTGCCGTACGTGTTCAACCGGCA 875447 29 100.0 32 ............................. CTCGGTGTACTGCTGCTGCATTTCCATGAGCT 875508 29 100.0 32 ............................. CAGCTGGAGGCAACCGGGCGGATGGCCGAAGC 875569 29 100.0 33 ............................. GTCGGGTTGGGTAACGTTCAGAACTATGCGGTC 875631 29 100.0 32 ............................. GGATACTCGAACTCGTCGGCCCGCTTGATCGA 875692 29 100.0 32 ............................. CCCTCCCCGGCGCCACGCTTCCGCCAGCGCGC 875753 29 100.0 32 ............................. GCTGACGTAGAAGCCGGTCTCCAGCACCTCTA 875814 29 100.0 32 ............................. CTGACGCAGGAACTCGGGATGTTTCAGATACG 875875 29 100.0 32 ............................. TTACATGCATGCACGTAGACTTCGGGAGGTTT 875936 29 100.0 33 ............................. CGATGGGAAACCGGTCGGCGCGTTGACACACTG 875998 29 100.0 32 ............................. GTGAATGGGGTCTTACCATTCAATGTTGTTTG 876059 29 100.0 32 ............................. CCCAACTGCCCGGTGATCTGCACCTCGGTGCA 876120 29 100.0 32 ............................. CCAGACGCTACCGAGCTGGAATACCTGAAAGC 876181 29 100.0 32 ............................. CAAACCCAACCCCTCCCGCTGGAGCAAAAGCG 876242 29 100.0 32 ............................. CTCGACGCTCACCGGGCATGCCGCGAGGGCTT 876303 29 100.0 32 ............................. CGGGGTCAGGTGGTGTTGTATGACACTGAAGC 876364 29 100.0 32 ............................. CGCACCCTGAACCTGAAAGGTGGGCAGGTGGT 876425 29 100.0 32 ............................. TTCCTGTCGGGCACCCGGCAGTTCTGGAACAC 876486 29 100.0 32 ............................. TTAGCCGAGGTTGATTTCGAGGGGCTTGCGAA 876547 29 100.0 32 ............................. GCTGCCCGGTCAGGGCGTTGATCGGCGCGCAG 876608 29 100.0 32 ............................. GATAAAACCCGCGAACTGAAGGGAGCGCTCAA 876669 29 100.0 32 ............................. GTGCAGTCGATGTTGTAGACCTGGGCGCTCTG 876730 29 100.0 32 ............................. AACAGGCGATTGCGGCCCATATACTCGCAGAA 876791 29 100.0 32 ............................. GGCGCGAGCCTCGCTTGGCGTCGCCTCGCCGC 876852 29 100.0 32 ............................. GCCTCGGCGGCCAGGTCGAGATACTCCTTAAT 876913 29 100.0 32 ............................. AAATGGTGTGCAACGGTCATTGGCCGAATTAC 876974 29 100.0 32 ............................. GCCTGAATCTCAGCCTCAACCTCTTCACGGGG 877035 29 100.0 32 ............................. TCGGCTACCTTTTCCGGTGCGCCTGAGCTGAT 877096 29 100.0 32 ............................. TTGTCGAGTCTGGTGATGATGAGTTTGCGCTA 877157 29 100.0 32 ............................. TGACGGCGCCAGTTGACGGCCCGCTGCAATGG 877218 29 100.0 32 ............................. CGGATGAAGGAAGAACGCCCGCATGAGTACGT 877279 29 100.0 32 ............................. GTGGCGCTGGTAGAAGAGGCGGTAAAAACCAC 877340 29 100.0 32 ............................. GAAGGATGCTTCCATCCGGTCGGCGGCATGGA 877401 29 100.0 32 ............................. CAGCAGTCCGGGCAGGTGTTCGCGGGTGATTA 877462 29 100.0 32 ............................. ACGGTGACATCCTCATCCCGCAATACGACGTA 877523 29 96.6 32 ............................T GTGTCGGGTCTGGTACGGGTTGCGATACCTGA 877584 29 100.0 32 ............................. GTCGGTTTGAACAGGCGGTTGAGTTCGCGGAA 877645 29 100.0 32 ............................. TGTCATCCTTACCTGAAATCGTAAGTCGTTGA 877706 29 100.0 32 ............................. CCGCTCATTCTCAGCGTGCAGGGCGTCGTAGT 877767 29 100.0 32 ............................. GAACGTGACGATGCCGCCGCCCAGCGGCGCAA 877828 29 100.0 32 ............................. GCGGCCGCGTGCGGCCTGGTCGCTGGCGACGT 877889 29 100.0 32 ............................. CATCAACGACAAACGCGTTGATGCGCTGGAGG 877950 29 100.0 32 ............................. CCCATGGCCTGGTGATACGCCTGAGCAGCCTA 878011 29 100.0 32 ............................. TTGGCTTGTTTGCTGATGTGTTGTCAATGGGT 878072 29 100.0 33 ............................. TATAACGCAATCGTTGTTCGCCGCGATGCTGCT 878134 29 100.0 32 ............................. GATGGCGGCGCCCGAGCAGGCAACGACTGTCA 878195 29 100.0 32 ............................. GACAAGATCGCCGTCCTTGAGGACACGAAGAA 878256 29 100.0 32 ............................. GGGGGATGCTGACTGATGGCCGTGCGACATTA 878317 29 100.0 32 ............................. CCCGGCAGCCGAGGTGCTGTTGCTGGCTATCG 878378 29 100.0 32 ............................. GCTGAAACAAGCAGCCTTGGTCAGCCCGCGAT 878439 29 100.0 33 ............................. GACTCCCAGGGGAACTATCTGTGGCGCCCAGGA 878501 29 100.0 32 ............................. TGCCGTTGGCAGTGTCGAAACGCGCCTGAGCG 878562 29 100.0 32 ............................. GATAGCGGCCAGGATGGCGAACCGAAGCGACC 878623 29 100.0 32 ............................. GCCCGGAATGGTCGCCGGGCGTCATGACCTAT 878684 29 100.0 32 ............................. TTGTTGATCGTATTGAGTGGGATATATTTTTC 878745 29 100.0 32 ............................. CTCTGCCGTGACTTTCACCATTGCTGTGGATA 878806 29 100.0 32 ............................. TGGGATAAGGGCGGCAGAGTCTGGCCTAATCT 878867 29 100.0 32 ............................. AACTGAATCGCTGGACTTCCCGGCTCCAATTC 878928 29 100.0 32 ............................. TATCTGGAGATTGCCCAGAGACAACTGCAAAT 878989 29 100.0 32 ............................. GCATCTTCGTTACCCTGTACCTGCCGATATGC 879050 29 100.0 32 ............................. ACGCCGATAGCACAGCACAGGCCGCGCCAGAT 879111 29 100.0 32 ............................. GCCATCGCGCTTCATACAAACTTGGTGGAAAA 879172 29 100.0 32 ............................. GGTGATTTATGAGTGAGTGGATTAGCGTAGAA 879233 29 100.0 32 ............................. CACATGCTCGACAGCGCCCTGATCATCCCAAC 879294 29 100.0 32 ............................. GACGGTCACGCAATCATGCACTCAGATGACGC 879355 29 100.0 32 ............................. GTCAATGCCCGCGTGCTGGTGGACTGGTGGCG 879416 29 100.0 32 ............................. CGCGCAGGCATCAAACCGCGCGGCCCAAACCA 879477 29 100.0 32 ............................. GTAGTTGGCGCCGACGGTAAGCCGCTGGTGGT 879538 29 100.0 32 ............................. GCCGCCGAGCGCCTGGCGCTGGAGTTCAACAT 879599 29 100.0 32 ............................. GTCAGGCTGTACCAGAAGGGCGCTGAACTGAG 879660 29 100.0 32 ............................. GGTACGGCGACCCGTCCATTGCACTACGTGAT 879721 29 100.0 32 ............................. CCCTAGCACTCACAGTGACGCGCGGCGGCGCG 879782 29 100.0 32 ............................. GCGGTGGATTGCCAGAGCGACACGGAGCTCGC 879843 29 100.0 32 ............................. GCGTTGGCCGATGTGCAGGCCGCCGCGTCGAG 879904 29 100.0 32 ............................. CCCCCAAACCCGACCAGGAAGAGAAGAAGGTC 879965 29 89.7 0 .........................G.TT | ========== ====== ====== ====== ============================= ================================= ================== 91 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCGAAGATCATCCCCACCATCGAAGAGGTGCTGTCCGCAGGTGGTATCTCGCCACCCGAGGCACCGCCGGAGTCCGTACCACCAGCTATCCCCAACCCGGAAAGTATCGGCGATGCCGGGCACAGGGCGCAGTAATGAGCTTTCTGGTCGTGGTCACCGAGAACGTACCGCCGCGCTTGCGCGGACGCATGGCTATCTGGCTGCTGGAGGTGCGTGCCGGCGTCTATATCGGTGATGTCTCCAAGCGCACCCGCGAAATGATCTGGGAACAACTGAGCCGGGGGCATGAAGATGGCAACGTTGTTATGGCCTGGGCGAGCAACCACGAGTCGGGTTACGAGTTCCAGACGCTAGGCCCGAACCGTCGTTTGCCGGTGGACTTTGATGGCTTGAATCTGGTCGCCTTTCAGCCCTTGGAAAACCCTGATCTTTAACAAGGAAAAGTTGGTAGATTTTTAGCGGCTAATTTTCCCCTTTGGGGACAATTGGTTACGCTAAGG # Right flank : TGGAGGGGGGCTCGGCACGCTGTTTTTTAGCCGGGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGTACATGACGCGGATGAAAAGGGAATAGGGTGCGGCGAATCTCGCCAACGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCTCATGCCACTGACTCCGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGATAACGGGCGTTTCGCCCATCCTTCATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACGCAACGGCCGTCACCGCTTTCGGCCTGACCGCCAAACTCGCCCTGGACAGCGTCCGCAACAACGGCGGTGTCGCCGCCCTGGCGCTGCGCAGCCTGCTGACCACCGCGCTGGTGTTCTGCTTCTTCGAGGTGTTTCCGCATCATGCGGTGGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4500723-4501110 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGUW01000004.1 Pseudomonas oleovorans strain NCTC10860, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4500723 27 92.9 32 .-..........A............... AGTTCCAACCAGGCTTCGACGAGCCTACGACA 4500783 26 89.3 33 --..........A............... ATGACCAACTCCGTCATCAAAGGCGAACAGCAT 4500841 28 92.9 34 .C..........A............... AACGTCCCACGCTTTCATCACCAGCTGGGTTTTC 4500903 28 100.0 32 ............................ TGGTCGAATCCGCCCAGCTCTACGCCCCGCCC 4500963 28 100.0 32 ............................ TTCATGTGCGCGGCGCGTGGCTTGATCTTCTC 4501023 28 100.0 32 ............................ TGCACGCAGAGGCCGAGTCGCTGCGGACTGAG 4501083 28 75.0 0 ...........TA........C.GCC.C | ========== ====== ====== ====== ============================ ================================== ================== 7 28 92.9 33 CTTCACTGCCGAGTAGGCAGCTCAGAAA # Left flank : TAAGCGGCCAACGCCGACAGCAGCAGGTGACTCAGCCAGAACGACACCGATTGACGCAACAAACTGACGTAGTCGACCTCATCGATCCGACCCCAGGTAATCAATGTGATGACAATGCCGATCACCCCGACCGCCAAGGCAACCCAAGCCACGTGGCGCGGCAATGCCGGCCACTCGCCCGGACTGGAATTCACTGCCGCAGCCGGCAAAGGTTCGAAGGGATTGGCTTGGCTCATGAGGTACTCCCTGTCGAGGTCTGAATCCATCGAAACGCGAGAGTACCGCCCCTCCCAGCAGGGCAATAGCTCGAGATGGCAGAACTGTGCGGTATGGCCAGACAACGGTCAGCACCTACAAGGCATGCCCATACCCATTTTTCTACGACGGACAAATCGTCTTTTAAAAATCAATGAGTTGCCGGATGACGAGAAAAAATGGTCAACCACCACCGAATCCCGCCATACCTTGAGCGATGCAAGTTTGCCGGCTATCGTGCCTAC # Right flank : CTTGGCAGCCACAAGCAAAAGGGCTTAACTGCCAGCATTGTTTCAGGAGCCCCTCATGGACGACATCAGCCCCTCCGACCTCAAGACCATCCTCCATTCCAAACGCGCCAACCTCTACTACCTGCAGCACTGCCGGGTGCTGGTCAACGGTGGGCGGGTGGAGTACGTGACCGACGCAGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAACACCACCACTATCCTCCTCGGCACCGGCACCTCGATCACCCAGGCGGCGATGCGTGAGCTGGCCAAGGCCGGCGTGCTGGTGGGTTTCTGTGGCGGTGGCGGCACACCGCTGTTCTCGGCCAACGAGATGGACGTGGAGGTCGCCTGGTTCTCGCCGCAGAGCGAGTACCGCCCCACCGAGTACCTGCAGAAGTGGGTAGGGTTCTGGTTCGATGACGGCAAGCGCCTGGAGGCGGCCAAAGCCTTTCAACTGGCGCGCCTGCAACGTATCCGCCAGGGCTGGC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4513123-4514530 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGUW01000004.1 Pseudomonas oleovorans strain NCTC10860, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4513123 28 100.0 32 ............................ AAACCCCATCGGCGATTGCGTTGACGGTTTCG 4513183 28 100.0 32 ............................ TGGCTGACGCCCGTGACCAGCTCAGTGATCAG 4513243 28 100.0 32 ............................ ATAGGCGGCCAGTCTTGGGGAGGCAGGGCTGG 4513303 28 100.0 32 ............................ TGGGCCTCTTTCATGTACGCGCTGCGCTTTTT 4513363 28 100.0 32 ............................ TCCACGGCGCAGGTGATGTAGTCGGTGAGCCG 4513423 28 100.0 32 ............................ AGCGAACATGACGCTCCTCAAGGAGGCGCTTA 4513483 28 100.0 32 ............................ AGTCCGTTGCCTGCCGAAGTGGTGAAGCTGCG 4513543 28 100.0 32 ............................ ACCAGCAAGAAGGCGACCGCAGCGAAGCCACC 4513603 28 100.0 32 ............................ AGGAGGTTCCGATGTCAGATGTAACAAGTCCC 4513663 28 100.0 32 ............................ TTCCCATCAGAAGCCTTCCAGGTCAGCACCGC 4513723 28 100.0 32 ............................ TGGGCGGCAGCCCAGTCGGTCGCCGAGCCCTG 4513783 28 100.0 32 ............................ TATAGGGGTGCGCGGCCTGGAGCGCAAGAGCG 4513843 28 100.0 32 ............................ TTATGCTGCGGGAAAGTCTCGGCCACGCGCTC 4513903 28 100.0 32 ............................ TATGTAGAAGCCGAGGCGCCTGACTGGCGCCT 4513963 28 100.0 32 ............................ TTGTCGCGGAAGATCGCCTCGGCCGCTTCCCG 4514023 28 100.0 32 ............................ TTGATCTTCGCGGCCATCTTCAAGAGCCGATC 4514083 28 100.0 32 ............................ TATCCGAAACTTACACAGGCATGAGCGGCGAC 4514143 28 100.0 32 ............................ TGCCTGACTGCTGCAGTGGGCTTCAGCGTGAC 4514203 28 100.0 32 ............................ CAGCATCACGGCCACAGTCATAGCGTGCTCCA 4514263 28 100.0 32 ............................ TACGAGCCGGTATACGTGGTGCGCGGCCAGGC 4514323 28 100.0 32 ............................ TACGCCTGGGAGCGGGGCTCTGTGGACAGCGG 4514383 28 100.0 32 ............................ AATCTCAGGCACGCGCTGTTCTTCACGCTGCA 4514443 28 100.0 32 ............................ AGGAGGCTGAGCGCAAGCGCGGCCTGACCATT 4514503 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AAGCGCTGGATAAGTTGCTGGCGCTGAACTGGCTCAGCGGCATGCGCGACCACTTGAACCTGGGTGAACTGGCGCCCATCCCGGCGAAGGTGCGCTGGCGCTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAGCGCGCCCGCCGCCGCCTGATCAAGCGCCACGGCATCAGCGAAGCAGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCTTATGCCACCTTGCGCAGCAACGGCAGCGGCCACAGCTTCCGCCTGTTTATCCGCCACGGCCCACTGCTCGACAACCCCACCCCCGGCACCTTCGGCGCCTACGGCCTTAGCACCCAGGCCAGCGTGCCCTGGTTCTGACCCTTTTCCCAGCCCAAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTAGCACCGGAAAAATCGGGCAGGTTCTTTAACAATCAAGCCGTTAGGGTTATTAGGCTCTA # Right flank : ACTACAAAAACGCCGGCGCCTGATAAGCGCGGCAGTTCGACCCAGGTTTTCCAGGCCGTCTCACGATCCATGTTCGGGTCGAAGGCGTAGGTTTCCTGAGCCTGCACCACGTCACGGATGATCGGCCAGACTTGGTCGAAATCGGCTGCCTCGATGGGCCGGATGATCAGTTCATCGCTCACTGGTCGTAGCCTTCGGCCAGGTGCAGATCCTTGAGTTTCACGTAGTTGCCGGCCGTGTAGCTGAAGAAGTTGCGTTCCTTGTCGGTCAGCGGGCGCGCCTGTTTCACTGGGCTGCCGACGTAGAGATAGCCACTTTCCAGGCGTTTGCCCGGCGGCACCAGCGAGCCTGCGCCGATGATCACCTCGTCCTCGACCACCGCGCCGTCCATGACGATGCTGCCCATGCCGACCAGAATCCGGTTGCCCAGGGTGCAGCCGTGTAAGGTGACCTTGTGCCCGACGGTCACTTCGTCACCGATGATCAGCGGGTAACCATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //