Array 1 40697-42250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMOF010000007.1 Streptomyces triculaminicus strain JCM 4242 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40697 29 100.0 32 ............................. GCCAGCATTCACCGCGCGACCGGGGTGGCCCG 40758 29 100.0 32 ............................. TCCGTAAAGGGCCCTCTACGGGCCCCGCGTAC 40819 29 96.6 32 ............................T GACGGGTCCTGGTCCACACGTGGACCAGTCGG 40880 29 100.0 32 ............................. ACGACGATCAGCGGCCAGAGCAGCATGACCAC 40941 29 100.0 32 ............................. CCTAACCAGCGCTGACCGCTCCGGCTGGAGCC 41002 29 100.0 32 ............................. CGGGCCACCGACCTTGACCTGAAGCTCATCCT 41063 29 100.0 32 ............................. TAGCTGCGGATCGAGTGTGCACCTTCGCTGGC 41124 29 100.0 32 ............................. CAGTGGGCCACCTGGGGCCAACCTCTCGAAGA 41185 29 100.0 32 ............................. CAACAAAACCGCAGGTCACACCTAATGCCTCC 41246 29 100.0 32 ............................. TCGTCGTAGGCTTCCCACCCGAGCTCGCTGTA 41307 29 100.0 32 ............................. GCTTCAGGCTGTTTGCCGACGGCGGGGAAGCG 41368 29 100.0 32 ............................. GCGACCGCCTCCTCGCCGAGGGCCGCCAGGAA 41429 29 100.0 32 ............................. ACGGCCACGGCGACGACAAGCACCACGCCGTC 41490 29 100.0 32 ............................. GCCGACGACATCACCAGCGTGTTGGCAGGCCT 41551 29 100.0 32 ............................. GCGGGGGCGTTCTTCTACCCGTTCACGGGAGC 41612 29 100.0 32 ............................. CGCCCGGCTGTTCCGGGTGGACACGCCCCCTA 41673 29 100.0 32 ............................. ACCGTCGTGTGGCAGGGACCGAGCAACCTGGG 41734 29 100.0 32 ............................. GTGGAGTTCATCCAGGTGACGGGAGGCTGATG 41795 29 100.0 32 ............................. GTTTGTTGGGATGTCACTCGACGTCAGTTACC 41856 29 100.0 32 ............................. CTGCTGTGCGGCTGCTCGGGCCTCGTCCCGGC 41917 29 100.0 32 ............................. CAGCTTGGCCTCGTCGAGCCACTGCCTGCCCA 41978 29 100.0 32 ............................. CGGGCGGCGGCCAGCGCGGCGAGCCCGAATAC 42039 29 100.0 32 ............................. ACCCCATCGAGGCCGCCCGGCACGGCGGATGG 42100 29 100.0 32 ............................. GTCGCCCAGTCCGCCGCCCGCCAGGGAGTCGA 42161 29 100.0 32 ............................. TGGGTCAGCACGCCCGTGCCGATCGAGATTCC 42222 29 93.1 0 .........................A..A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGAGCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CCGCTCAGCACTCCGAAGCGCTGCGACAGCAGGCCCAACGCCGCGCCGCCGAACAGGCACGCCAGGTGCCAGGACCTCATCGCCGCCCCCCGGACTACGGCTCTGGAAGGGCAGGCTTCAAAGGCATCAGCCGGTAGAACAACTGGATCGAGGGAACGCAGCAGTGACGTCCGCAACGCATCTCCACTCGGCATCAGAGCGCCGCCCCCCTGACCAGGCACTCCCTGCTCATCGGCCTCGCCTTCGTCGGCCGCAGGAAGAACTAACGTGGCCCGTACGACGTTGGGCGAGCGACGGCCAAGTAAGGCCGGTCGGTGACCGGGACAAGCTCCGGGTGGCTATGCCGAAGGAGCTGAGCTTCAAAGGACCACTCTCATAACCATCCGCCCCCAGGCCCTTGAGTGTGTAAGCGTGTATCCATCATGTTCATGGATGCTGTGCCATATGCAGCTAAGCGTCAAGAAAGAGCAAAGCCCTTACAACGCTGCAGGTCGCGAAGG # Right flank : AGCCGACAAGGCCCCAGAGTCCGCGGGGGCTGACCTCGCTGTTCTGGTCGAACATCAACCGTGCGACACCTTCAGCCTCGACATGGACATGCGGCTCGAACTGCTGTTGTCCGCAACCGTGCCTGGCCCTGCGCTGCGCCGAACCGCGCGCCGGATGATGGGGGCCCGCTGCGGACTGCCCCCGTCCGGCGGGACGAGAACGGAACGCGGTTGTTCTCCTGGACGACCTCCACACCGGCCCCCTTCACGCCCGGTACCGTCTCGAGTGGCAGTTCCGAGCCCGGCCCGAGACCAAAACGAGCGGCAGGGAGCCGGCGTGACGGCGGTGCGGCCCAGCGATCAGATGCGTGACCTCGGTGTCGCGCAGTACGGCGCTCCCCTCCTCGCCGAGGCCAGCTGGCCCTTCACCCCTGCCCGCTGAGAAAGAGACCGCCGAGCACACCGTCGAGACGTTGTTCACCTCGATGAAGCGCATCGCGCGCGTGCACCCCTTCGCCAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 50956-51411 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMOF010000007.1 Streptomyces triculaminicus strain JCM 4242 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50956 29 100.0 32 ............................. CCGGGGCACATCCTCGGGGCTTGTGGTGCGGC 51017 29 100.0 32 ............................. CACGGCAAACCGACTGAGAACGCCTACACCTG 51078 29 100.0 32 ............................. TGCCGACGGGAGAAGGCGCAACGCATCCTCGC 51139 29 100.0 32 ............................. TCGAACTCCAACGCCCGTGCGGCGACGAGGAC 51200 29 100.0 32 ............................. ATCCTGGCCCCTCACCAGCCGGTTCTCCCCGA 51261 29 100.0 32 ............................. ACGAAGGCCGGCACCCGGTTCGAGGACGGAAG 51322 29 96.6 32 .............A............... GCGGGCAGGGGGCGTCCGACGGCCCCGGCGAG 51383 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGGGCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CTTGGGTGGTCACCGTGCACGAGCTCCTGCCCCATGGGGGTTTCGCACCATGCGCGGAAGTGGCGCACGATCTCGTGCGTGGCCTGAACCGCTTCGGCCTGCGAGGCGTACGGGGGCGGTCCTTCCGGCCGCTGGGCCTGGTGTACCTGCTGAGGTTCGACCGTCGCCTGATGAGGCTGATCGGCTTGCTGGACGGTGGTACCGGCCGCCATCTGCTGCGTGCCGACAGTCTGCTGGACCTTGGGCTGTTCCTTCGTCTGCGGGGCTGGTGCCACGCTCTCGCGCGCCGCGGTGCTGTAGGCGAGGCTGGTGTTGCTCAGCGTGAGAAGGGCGTCGGCGGTGGGGAGGTCGCCTGCGGTCGAGCGGTGGATCCGGTCAGCCGCGCTGATGGCGATCTCCGCGATCTTCTCGCATGCGCGTATCGAGACGGTCTTCCAGAACGTCTCGAAGCGGACGTCTTCACGGAAGGAGTTCCAGTACTCCCCGGCTCTCCCCTTCAA # Right flank : GTCGACCACGACGTCGCAGGTGAGATCGGCTGGGCCATCTCGGTCGACTCCACAATCGTCCGCGCATCAGTACGCGGCTGGCGCCCGCACCGCGCCGCCGCCAACGCCTGCTTCAAAGAGGGACGAAGTACTGGAACACCAGGGCGAAACCGTGGCAGAGCCTCATCGCCCGCCTGGTAGAGGTGGTGCTGAAAGAGAGGGCCTCAGCCACTCGCGTGACGGCTTCACCAGCAAGTTCCATCTGGGCGCGGAGAACGGCGCTGGACGGTGACCACCAGCTCCATGCCCGCCCTTTGAGCAGCTCATGTGCCATGGCCGACCACAAATGTATTCTCCGTCGCCCGCCCTGGCTTTGTTGATGAGTTTCGAGAGCGCCTGTAGCTCGGCGGCGAGAGCGGCTTCTTCCACGGGAGAGTGATGTCGTCGAGTTTTGAAAGCACCTGGATGCTTGCGTCGGGGCCATGGTTGTGCTCTGCACGACGAGGGGGCCCGGGTGCTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGGCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 54387-55430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMOF010000007.1 Streptomyces triculaminicus strain JCM 4242 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================================================================= ================== 54387 28 67.9 193 ....TG.G.C...T...A...T....GG GCCTTGAGTGAAGTTCATGACGTGGGTGCCTCCTCGAGCAACTGGGAAGCGAGGCAAGGTCAACAGGCCTGCATAGTGGCGACTTGCCTCACCTCAGCAAGAACATGGGGCCATCGTGTTCAATGAGTGTGAGCCAGGCGTAGCTCTGCATCAAGGAATGGCAAAGCCATCACAACCCTGCAGGTCACGAAGG 54608 28 100.0 33 ............................ GACGCCGAGTGGCACCAGCTCCTGGCTGCCGTC 54669 28 100.0 33 ............................ GGCTTCGGTCATTTGCCGACGGCGGGGGAGTGG 54730 28 100.0 33 ............................ GCGCCGGCCGATCCGGCCCCGGCCCAGATCCCG 54791 28 100.0 33 ............................ GTCGGCACGGACGCGGCTGGTGTTCTCGGGCAG 54852 28 100.0 33 ............................ GGCACAGAAACACGCCCGAGGTGACCACGAGTA 54913 28 100.0 33 ............................ GCGGGAGTACGGGGGGGCCGTAGGGCGTGCCGC 54974 28 100.0 33 ............................ GGACTCTCTTGCAGCGCTCCATCGCACGTTTCG 55035 28 100.0 33 ............................ GCCGCAGGCCGTGCCCAGATGGCCCTGACACCT 55096 28 96.4 33 ...............A............ GCGCAGCTCGACCCAGGTGACGCTTCCTGACGT 55157 28 100.0 33 ............................ GGGTGACGAGGTCGTTGACGGTGTCGAGGACAG 55218 28 100.0 33 ............................ GGAGGCCGCCCTGCTACTGAGGGGCTGGGCAAC 55279 28 100.0 33 ............................ GTGAACGAACAGCTCACCGTTCGGTGCGAACCT 55340 28 96.4 34 .................A.......... GGCCCTTCTGCTCGGCCGAGATCGGCACGGTGAC 55402 28 96.4 0 .................A.......... | T [55428] ========== ====== ====== ====== ============================ ================================================================================================================================================================================================= ================== 15 28 97.1 45 GTGAGCTCCGCGCAGGCGGAGGTGAGCC # Left flank : GCGCTCTCAGCCGAGTCCTCAAGGCAGAGGGCCTGGGTCGAGGAGCACGGTGTTGCCGCCGACGAGTTGGCACTCGACTTCGATCACGCGTTGCGGACCGCCGCACCATTGGCTGAGGAAGGACGTGTCGAAGTGACTGTCATGGCTCGCCTGAGAGCGATCGATGCCCTCTTTACCGAGATGAGCGGCCGGAAGAATGCAGACCGCTGGACCCTGGAAGCCCTGGAGACGGACTCCGGCTGGAGCGAAGTCCGCGCGCTGGCCCGCCAGGCCATGCTCGAGCTGATAGGCGCATGGGATCACCTCATGCCAAAGATCGACGTAATCCGGTGACCCTCACCGCGGCTACAGTCCTCGTCACAAGATCAGCGCCAGACCCCATCGATGTCCACCCGTGGACGGCCGACGAGTATCCGTCGTTTCTTAGCGAGCAACTCGTGCGAGGTGTCGGGCCCTGCAGGCCTTGGGGTAGAAGGACGTTGCGTTTCGCAGAAGGAGGC # Right flank : CCCGGATCCCTACATCGACTACCTGGAAGCCAGCTGGCAGGGCACGAAATGCGCAGTTGACGAAGACCCTTCTCGAAATGCTGCTGCCCGGCGTCGGACTGCCTGCCACTATCGCCCCGGGCAGCGTCGTCGAGGGCCGCGAGCTCGTAGAGGCGCGGCCCGGCTGCGCCCCGTAGTCACTCACCGTGCATACACCTTCGGGAGAGTTTCACTACGGGTTCCGCGCACCGGCCCGCACCTTTTGGCGCCTGCAAGCCGGGGCGCTCGGCTGGTAGCTCGACGTGCGCGCTGAATGTCCTACGCCGTGGCACCGGGCGCCGTCACCTGCGGTGGGGCCTGCTCGGCACGGCACGCTGGAAGACCGGACGGCTGCGCCCTCATCACCTGTTTCGCGCTCGTTCCTATCCAGCACGTCCAGGCTTCCGGACCAGGCGATGCGACGAGTGAGCGTTGCGACCGGTCGCAACGCTCTACGCGCGCGGGAAAGCCAGCATCAGAGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCTCCGCGCAGGCGGAGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 61590-61256 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMOF010000007.1 Streptomyces triculaminicus strain JCM 4242 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 61589 28 92.9 33 .............GA............. GGCCGCCGCGACCGCCCGCGACATCGCCGAGGA 61528 28 96.4 33 ......................C..... GAGCGTGATCAGCTGCACTGAATGGGCGACCGT 61467 28 100.0 33 ............................ GGAACCGTCCGCTTACGGTGACTGTGGGTATGG 61406 28 96.4 33 ...........T................ GGGTGCCAGGCGGCGGCCGGTGATGCCCTCGCA 61345 28 96.4 34 ........T................... GATCGGGCCCGCGGGCGCGACGTCGTTCGTGATG 61283 28 89.3 0 ......G...T............A.... | ========== ====== ====== ====== ============================ ================================== ================== 6 28 95.2 33 GTGAGCTCCGCGCAGGCGGAGGTGAGCC # Left flank : CGTGTCGGCTCACCTCCGCTCGCGCGGAGCTCACCTCGGGCGTCGCTACGACGGTGCCCTCGGCCGCGGCTCACCTCCGCTCGCGCGGAGCTCACCAGAAGGACGTGCTGGAGCGCGCCGCCGCGCTCGGCTCACCTCCGCTCGCGCGGAGCTCACCCTTCGCGACCTGCGGTGTTGTAGCGGCTTTGCTTTTTCTTGACTAGGGACGCTCGATACAGCCCATTGAACACGACGGTCTTCTCTCCAGGAGGACTGAGCTCCAAGTCCTCGACTGCGGCTTGGTTGGCGCCGAACGCGTCGCCCTCGCCACCATCACTGCCCTCGCCGAGGTGGTCAGCCGCAGCGACATCGTCGATTCGTGAGCCTCCGCATACCGACTGACGCTTTTCATCCGGCCGCCCTCGCCGAACAGCCAGTCGCCCTGTTCAATAGGGATTTGTTCCGCTCAGAGCGCTGCGTCAATAAACAGCAAAGCCGCTACAACACCGCAGGTCGCGAAG # Right flank : GACTTGGTCCCCACCAAAGAAGCTGGTTAGGGCCGTCCACCGGGCTGGTGGGCAGGCCCTGGATCCCGGCTGGCCAGGCCGTCCGTGGTCGCTATCCTTGGAGGACCGGGTGCTGTTGGTGGCGATGTACTGCCGCACGAAGCTGTCCATGTCGCAGCTGGCCCCGCTGTCCGGGATCTTCACGGCGACGGTCGGCTAGATCATCAAGCGGCACGGCCCGCTGCTGACCCTCGCGCCCGCCAAATGCGGGCCGGGCGGTAATGACGGGCTCGTCGTGGGCGGAACGCTGGTGCCCGCCCGGGACCGGTCGGTCGCCGCCCGTCGAAGAACTACTGGTATTCGACGAACCGCTCGAGTGATCGTCTGACCTGCGTTGCCCCAAGGAAGCCCCAGCTGACGCGCGAAAACTACCCTCGGTAGTTGCCGCCGTTTCCGGGGGCTTCCTGGTTCTTGTGCCCTGGGTGTGTCCTCGGGACACGGAAGAGCAGCCCAGCTTTCAG # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCTCCGCGCAGGCGGAGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 61934-62985 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMOF010000007.1 Streptomyces triculaminicus strain JCM 4242 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61934 29 100.0 32 ............................. AGCGCGGCGGCGCGCTCCAGCACGTCCTTCTG 61995 29 100.0 32 ............................. CGGCCGAGGGCACCGTCGTAGCGACGCCCGAG 62056 29 100.0 32 ............................. ACACGGCTCGGCAGGAACGGCTCTGGCGCGAG 62117 29 100.0 32 ............................. CGGCGGCGGACGTCGCCGCGCCCGCCTCAGCC 62178 29 100.0 32 ............................. CGCCTTCTACGCCTCTACCAGCAGCGACCTGC 62239 29 100.0 32 ............................. CCACTTGGTGCGGGGCCGGCACACCACTTCCT 62300 29 100.0 32 ............................. GCGAACAGAGTCCCGTCGTAGGCTGTCTGGAT 62361 29 100.0 32 ............................. GAACCCTCGTGACCGACACCGCCGAGATCCGC 62422 29 100.0 32 ............................. ATGACGATAGGCGCTCCCCTCGTCCGAGCGGG 62483 29 100.0 32 ............................. TTCAGGAGGGTCTTCGCGGCGTCCTTGATGAC 62544 29 100.0 32 ............................. TGCCCGGTGACGAAGAGGTGAGAGAGGGGTTG 62605 29 100.0 32 ............................. GTCGGTGCTCCAGGGTCCGGTCCGGCGGTAGC 62666 29 100.0 32 ............................. TCGCCCGGTGGGCCGCCGGAGTCAGCCCCACC 62727 29 100.0 32 ............................. CATGGCGGCTTCAGCTTCTCCGACGACATCCG 62788 29 100.0 32 ............................. CACCCTCAGTGCGTGGATGGCCGCCCCGTCCA 62849 29 96.6 32 .............A............... TCCTGCGGCAGCATCGCCAGGCGCGCCCAGGC 62910 29 100.0 18 ............................. CCACCGCTCGCCCTACCC Deletion [62957] 62957 29 69.0 0 ....A....A.A.A.....CA..AG...A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.1 31 GTGAGCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GGTTCCGGCTCACCTCCGCCTGCGCGGAGCTCACACGGTCGCCCATTCAGTGCAGCTGATCACGCTCGGCTCGCCTCCGCCTGCGCGGAGCTCACTCCTCGGCGATGTCGCGGGCGGTCGCGGCGGCCGGCTCACCTCCGCTCGCGCGGAGCTCACCTTCGCGACCTGCGGTGTTGTAGCGGCTTTGCTGTTTATTGACGCAGCGCTCTGAGCGGAACAAATCCCTATTGAACAGGGCGACTGGCTGTTCGGCGAGGGCGGCCGGATGAAAAGCGTCAGTCGGTATGCGGAGGCTCACGAATCGACGATGTCGCTGCGGCTGACCACCTCGGCGAGGGCAGTGATGGTGGCGAGGGCGACGCGTTCGGCGCCAACCAAGCCGCAGTCGAGGACTTGGAGCTCAGTCCTCCTGGAGAGAAGACCGTCGTGTTCAATGGGCTGTATCGAGCGTCCCTAGTCAAGAAAAAGCAAAGCCGCTACAACACCGCAGGTCGCGAAGG # Right flank : AAGGACGTAGGACCCCCAATTCTCCGCAGCCCTTATGTGCTACCGCTAACTCTGCAGGCTTTCAGGGTCTGAGCCGCTGTTCCTGGGGGTCGTAGCACACAAGCCTCATCGATGAAGCGACGTGCGCAGCATAGGCCGATGCTTCGTCGGCCATGCTATACCGCACCGGGAAGTAGATCAGCGGGCCACGAGCCTCGCTGATCAACGGCTCGGTGCTCCACGGCGAGGCGTCGTCTTCATCTTCTGTGAGATCAGGCCACCGGCTCAGCAAAGCGGCAACGTACCCGGCTATGCGTGCGGTTGGCGGGTGCTTGGTGCCGAGGCCGATGTAGTGCTCGTACAGGTCACGGAAATTCCGGCCCGCAGTGGCGTCATCCGCCGGGTGTTCCCCCTCCCAGACCGCAATGTCGTAGCTCATGGCCGCAGCCTGTCACGCGCAACTGACACTCATGTCCCGCGCAGGGCATGGGGCTCACCAGAAGCTCACAGCTGCAGACCCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 71368-69840 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMOF010000007.1 Streptomyces triculaminicus strain JCM 4242 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================ ================== 71367 29 96.6 32 ............................C TGCTCGCGATCGCCGGGACCGACGCCCATCTA 71306 29 96.6 32 ....C........................ CCGCGCGTGGAGAACAGCGCGCCGTACACCCC 71245 29 100.0 32 ............................. GTGCGGTACTCGGTAGGCGAAGGCGAGATCAT 71184 29 100.0 32 ............................. TCGGGGACCAGTCCGTCGAAGACCGGCCGGGC 71123 29 100.0 32 ............................. CCGTCGCGCTGCATGGTGGTCTCTCTAGACGA 71062 29 100.0 32 ............................. GGGTGGTCCGGGGTTGGGCGCCGCAGTGGCCT 71001 29 100.0 32 ............................. AGCCGGGTGAACCGCGATGAGCGCCCGTACGC 70940 29 100.0 32 ............................. GCGCCCTTGCCCTCTACCAGTCCGAGGGCGTC 70879 29 100.0 32 ............................. TCCGCACGCTGAGGCGCGAGTTGGCTGGTCCG 70818 29 100.0 32 ............................. TCCCCGCCGACGTCGAGTGGGACAGAGAAGCT 70757 29 100.0 32 ............................. CCCTCTCCCCCGCCCAGCTGACGGACATCGTC 70696 29 100.0 32 ............................. TTCCTGGCCGTCGGCCTGAGTATCCCCTTCTT 70635 29 100.0 32 ............................. CCGACGGTCGACCCATCAGGCAGCAGGTCCAA 70574 28 96.6 32 ..............-.............. TTCTCCGCCCAGCTCTTCCAGTCGGTCATGTC 70514 29 96.6 32 ...A......................... TACCCGTTCGGGTTCCACCGGTGGGCCACGTG 70453 29 96.6 32 ...A......................... AGGGTCAGCGCGGAGTCGAGGAGAAAGGCGTC 70392 29 96.6 32 ...A......................... TTGGCGAGGTCTGTCACGGTGACCGCGTCCGC 70331 29 89.7 140 ...A......................T.T TCCTTTTCGACGGTCGGTTTTCCGCAGCAGCAGCTCCGAGCATGGAGGTACGTCATCACCTAAGCCTCAGCCCCATAACGTCGTTATGGCCTGAGCTCTCGCAGCGCTAGGACCACCCTGAGACGGGATCCTGTCTGCAA 70162 29 79.3 32 .GCCA....A................T.. GATGACCACCGGAGACTGTTCTCCGGTGGTCT 70101 29 86.2 22 ...A......G..............AA.. AGCATGAGTCGGGGTCGCCGAT CG [70076] Deletion [70051] 70048 29 69.0 31 ...A...TT..ATA.......A..C.G.. GTTTCTTCGACGGTCGGTTTTTCGTCCATGA 69988 29 69.0 32 CCT........A.AT....C....T...T GTTCCGAGCCAGCGTGAACTGCGCAAGTGCAT 69927 29 65.5 30 .C.A....A.AA.AC.A.....C.....A GGGTCGTAGAACCGGGCAGCAACCAGATGC 69868 29 79.3 0 ..CA...G.....AG............T. | ========== ====== ====== ====== ============================= ============================================================================================================================================ ================== 24 29 92.4 36 GTGGGCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCCGTCGAAGCTCACGATCGGCAGGTCCGTGTCCGGGTGAGCTCTGCGCGAGCGGAGGTGAGCCGCCGCAGCAGCGTCCGGGACAGCTGATCACCGCGTGAGCTCTGCGCGAGCGGAGGTGAGCCGCGGACGGGGAAGGGGCCGATGCGACGTGTGGAGTGAGCTCCGTGTGAGAGGAGGTGAGTCTTCCTCTTTCGACGGCCGGTTTTCCGCACTCGGGTGTGGCAACAGCAGCTTCGAGCATGGAGGTAGGTCACTAAGCCCCCAGACCCATAACGTCGTTATGGCCTGAGCTCTCGCAGCGCTAGGACCATCGTGAGACGGAATCCTGCTGGATGGCTGGAAGCATGGACGGCCTGCAAGGCAGCTCGCGCTTTCTTGGGGGAAGCTTGTCTCACAGCGGTCCGAGCGCGTGGCCATCGTGTTCAATGACTGCTGTGGCAAGCACATCTCTGCGCCAAGAAAGAGCAAAGCCACCACAACGTCGCACGTCGCGAAGG # Right flank : ATTCGGGCGAGGCGGGGGGCACTGCTCTGACGGGTGCACGATCTGAGCGCCGCACAGCCTGAGTACGTCCCAACTTAGGTGTCCTCCGGCTTCAGGCAGGACTACAAACAACAGCAGCAGATTCAGTGATTTGTGGCAGAAATGTCACTTTCGTCTCTCCTCCAGGAGGGCGGGATGCCCCAAGCGGGACACCGTCCATTCAGGCGAATCATCAGACACTAACGCCCCATGGGCACTTACAGCCCTCGATGTTAGTAAGCTGCCCCGCATGACGTCTCCTCAGAGCGACCGCGAGAAGGTCGTATCGAAACTGCCGGCGGCGCTTCGGCAGAGCCTGAAGATCCGCACCGCCCAGCTGGGTATCGACATCCAGGATGCGGTGGAAGCCGGCATCACCGCGTGGCGGAGCCTGGGCTCGAATCCCGCGTCCATCGATACCAGTGGCGCCGAGTCCTTCGCCACCTGGCTGCCGGAAGGCCAGTGGGAGGGGTTCCGGGCCG # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.44, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGGCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.30,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [35-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 72077-71681 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMOF010000007.1 Streptomyces triculaminicus strain JCM 4242 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 72076 30 100.0 31 .............................. AAGCACGCAGCGTGCGTTAGTTGCACGCCGC 72015 30 100.0 31 .............................. AAGCACGCAGCGTGCGTTAGTTGCACGCCGC 71954 30 100.0 31 .............................. CCCCTCGTGCAATTCGAAACCGGCCACCACA 71893 30 100.0 31 .............................. TCGAAGCTCACGATCGGCAGGTCCGTGTCCG 71832 30 100.0 31 .............................. CCGCAGCAGCGTCCGGGACAGCTGATCACCG 71771 30 96.7 31 C............................. CGGACGGGGAAGGGGCCGATGCGACGTGTGG 71710 30 76.7 0 A........C.T.T...A.........T.T | ========== ====== ====== ====== ============================== =============================== ================== 7 30 96.2 31 GGTGAGCTCTGCGCGAGCGGAGGTGAGCCG # Left flank : GAACAAGGTCAAGCTGTGCTTCACACCGACTTACGCGTCCTGGGCCAATCCCATCGAGGCCCACTTCGGCCCCTTGCGGCAATTCACCCTTGCCAACTCGAACCACCCCAACCACACCGTCCAGACCCGGGCCCTGCACGCCTACCTCCGCTGGCGCAACCAGAACGCCCGCCACCCCGACGTCCTGGCGGCACAAAGACGCGAACGCGCCCGCATCCGCAGCGAGAAAGGCCTTCGCTGGGGCGGCAAGCCACTACGAACAGCGGCCTGACCACCCAACCCGGCGAACCTTCGCGGTCACAGCACTAGGAGCATCTGGGGGCCGCGCTCCTGCTGAGCGACACGGAGCACGGAGCAGCCCACTAGATCACACTCCACGCCCTGGGAGGTTTGTTTCAGGTCTGTCAGAGCATGTGGCCTTCGTGTTCAATGGGCGCTGTGGCAAGCATGTCTTTGCGTCAAGAAATAGCAAAGCCGCCACAACGTCGCAGGTCGCGAAG # Right flank : TCCTCTTTCGACGGCCGGTTTTCCGCACTCGGGTGTGGCAACAGCAGCTTCGAGCATGGAGGTAGGTCACTAAGCCCCCAGACCCATAACGTCGTTATGGCCTGAGCTCTCGCAGCGCTAGGACCATCGTGAGACGGAATCCTGCTGGATGGCTGGAAGCATGGACGGCCTGCAAGGCAGCTCGCGCTTTCTTGGGGGAAGCTTGTCTCACAGCGGTCCGAGCGCGTGGCCATCGTGTTCAATGACTGCTGTGGCAAGCACATCTCTGCGCCAAGAAAGAGCAAAGCCACCACAACGTCGCACGTCGCGAAGGGTGGGCTCCGCGCGAGCGGAGGTGAGCCCTGCTCGCGATCGCCGGGACCGACGCCCATCTAGTGGCCTCCGCGCGAGCGGAGGTGAGCCGCCGCGCGTGGAGAACAGCGCGCCGTACACCCCGTGGGCTCCGCGCGAGCGGAGGTGAGCCGGTGCGGTACTCGGTAGGCGAAGGCGAGATCATGTGG # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGAGCTCTGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 8 99926-100381 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMOF010000007.1 Streptomyces triculaminicus strain JCM 4242 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 99926 29 86.2 32 A............T..........CC... GCCACTTACCCCGACGCTGCGGTACAGATGGC C [99940] 99988 28 82.8 32 ..C.G...T....-T.............. GTCAGCGCCATACAGATACCGTCATGGGGCAC 100048 29 100.0 32 ............................. GCGGAGACGTGCTCGGTTTGGGCGAGCGCCAT 100109 29 96.6 32 ........A.................... GTGCCGGGTTCTTTGCCGCCGTCGGCACCGAA 100170 29 100.0 32 ............................. CTCACCAAGGAACACGAGAAGCGCATCGCCGC 100231 29 100.0 32 ............................. GAGACCGGTCAGGCCGCAGACACCATCGTGGT 100292 29 96.6 32 ........T.................... AGCCGACCGGCCGGAGGGACCACCCACCCCGC 100353 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 94.9 32 GTGCTCTCCGCGCAGGCGGAGGTGAGCCG # Left flank : AGCCGACGACATCCACCGCATCGCCGAGGACATGCAACTCGCAGCCACGGCCACCCTCTATACGATCGACCCGCCCAACAGCGTCCGCGACCTCCACCCACTGACCAACACCGACCAACACCCCGACAAGATCGCCACCCGCCTGGGCGCCGACAGCACCCGCGTCCTGCCCACCTACCTCACCGCCGACGGACGCCACTGGCTGCACCCCACCCACCACACCCACAGGACAGCACTGCCCCGGCAGGTCGATCCCGGGGACCGGCAGACCATCAGGCGACTGATGAATGCCACCATCCCGATCAACAGCGAATGGCTTGCCGGCCACGATCCCGCCACCGACCCGCCGGCCACGTGGTCAGACGTCCCAGGACTCCGGGACCTCGTTCTCCTTCCCCACCCGGTAACCCGCACCACGATCGGCGCGTACCGGGGAGACAGAAAAACCCTCATCGTCGACCCGGAGAACGGCCTCGTCAGCCGCTGACCGTATGACGATG # Right flank : ACGGTCGTTTGAGCTGAATAGCGCCGGAGGTCGTGCGCTTTCCTTTCTGATGGATGCGAAGCGGGCCCGAGGCACGGTGGCGGCCCTGGAATGGCGTGAGGACCACGAGTGCGGATCTCGCAAGGACAACCCGTCTGTGGTGTACCCGGTGGACGCGATGGCAGGCCGTCAGGTGCCATTGCTGCTCCCGCCCTCCGGCATGGTGCATCGCTGGCAGCTCACCGGATGGCCGAGTGGCGGGTGGAGCCTGTGACCAGGGCGGAGCAACGGCCTCTGCTGGGCCACCAGCGGCGTCGCCCGCATGCCCGACCGGCCCTCGCTCGGCCCGGACCTGATCACAGCACCACGAGACAGTCTTGAGCTCTAGGCCTTCTTGTCCTTAGCGCGTGCCTCGAACTGACCGGTCTGGAGGAAGGCGACCCGATCCTCCGGAGTGCCCTTCAACGCCGCCTTGGCCGCAGCCTTCACGAAGGGTCCCCCCTCGTTGAAGATCCGCGAGA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCAGGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //