Array 1 74455-72830 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWJ010000106.1 Aggregatibacter actinomycetemcomitans strain SL7466 2200, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 74454 33 97.0 34 ................................T CCTAAAATAATTAAGGGAAATACTATGCCCACAG 74387 33 97.0 33 ................................T TTAGTTAATGTTTTCTTTTCAAGAATTTCCTAC 74321 33 100.0 35 ................................. TCTTTCACCCCTGAATAATAACCTACCTTTTTACC 74253 33 97.0 33 ................................T TGCATTTGATTTAACAAACGTTGCTCCGCACTC 74187 33 100.0 34 ................................. AACGCACCTAAGCCTTATGCAAAAGAACATGTTG 74120 33 97.0 33 ................................C GCTTGAGGTCTCTTTGGAGCAACACCTACATTA 74054 33 97.0 33 ................................T ATTCAAGGTGATTTTGCGCGCATGATGAACCTT 73988 33 97.0 33 ................................C GCAGTTTCCTATGGTCGCTAGATATTTGTCTGA 73922 33 100.0 34 ................................. ACTCCGCCGAAGAATTAAGCGATAACTTAGAAGA 73855 33 97.0 33 ................................T TTAGAAATTATACCTGTAAATCTAGAATCTTTT 73789 33 97.0 34 ................................C CGCCCCAGCTCTTATTTGTCGCGCACTCAACTAA 73722 33 97.0 34 ................................T GCCACAAATTGCTGGATATCCAAGTAAGAAATAT 73655 33 97.0 33 ................................G TCCTTTACGAATGAAATGCCAATTTGTGGCGGC 73589 33 100.0 33 ................................. GCATACTGAGAATAGTCAATCGTTGCACCTTTT 73523 33 100.0 33 ................................. TTGATACTCCGACCGCCAAGAAAGTGTTTGCTG 73457 33 97.0 33 ................................C AAAATCGCCGATGGATTTTTCTTTATTTTCGGT 73391 33 97.0 33 ................................C AGACCTGCACACCGAAAGTCTGGTCGGTTGAGA 73325 33 97.0 33 ................................T CAATGACCGTTAAGACTTTAAAATGACGCCCAT 73259 33 97.0 33 ................................G CCGTGGCTTGGTCGGCTTTTTTACTAAGCTCGT 73193 33 100.0 33 ................................. CCGACAATGTTTGTTGTCCAACGATCTATGCTG 73127 33 100.0 32 ................................. ATGTTGTCATCATTTTCTTTCGCCTTTATTCT 73062 33 100.0 34 ................................. TATAATTCTGCACTATTTTTCCTATAATTTCCAA 72995 33 93.9 34 .................A..............C GAGATAGTTTCAAAATCCATAGCTGTTACCTTTA 72928 33 87.9 33 ..G....T....G....A............... GATGGTGTACTAAACCTGATGTAATGCTAGTAT 72862 33 81.8 0 ............G....A..A....C.....TT | ========== ====== ====== ====== ================================= =================================== ================== 25 33 96.9 33 GCAGCCACCTTCAGGTGGCTGTGTGTTGAAACA # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGGAGACTCAGAGGGGCAAGCCAGGTTGCGCCGTATTGCGAAGCATTGCTTGGATTATGGCGTACGGGCGCAGTATTCGGTGTTTGAATGTGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTAGCGACTTATGATCCGGATTGTGATAGTTTGCGCTTTTACCATCTAGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGGGCGAAGCCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCCTGGTTCTCATCAAATTCCTGCTGAGCTAGCGATCCTTGTTTTCTTTAACAATTTGGAATAGTTAATTCATTTGTATAACGACGATATGCCCGTTATACTTATTCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGTAAGTAATCTACTGATTTTTCTTATTTTTTCATATAGGGT # Right flank : ACTTGGTATACGCTTTTTATGAGCATTTAATTGGTTAAAAATATATGAGCTTGTTGCCTAATGGTAGGGCAGCGTTTAACAAAACGCTCTGTGCGAGTTCGATACTCGCCAAGCTCACTATTTATTGCCCTGCACAATTTTATACAATCCTTTCTCAATTTTATTCAACATACGGGTAATCTCCAAAAAAACACCTCTAAAATCGACCGCACTTTTCCCCATAAATAAAAAAGCTGAATCTCTCTCGAAATCCAGCTTTTCTTTTACCTATTTATTACGCTAATTCAGCACGTAATTTTTTCGTAACGTCAACCATGACTTTCAGTTGTTCTAGGGTTTCTTTCCACCCGCGGGTTTTTAGACCGCAGTCCGGGTTGACCCATAAGCGTTCTTTCGGTACTACTTGAAGCGCTTTGCGTAGCAAGTGTTCGATTTCGGCGGCGGTTGGCACGCGTGGGCTATGGATATCGTACACGCCCGGGCCGATGTCGTTCGGGTAT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCAGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18207-20936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAWJ010000140.1 Aggregatibacter actinomycetemcomitans strain SL7466 2234, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18207 28 100.0 32 ............................ TCTCTTTTTGGTTTCAGAAGCTGATAAGGTAC 18267 28 100.0 32 ............................ AACAGAATCTGTAAAAAGCTACGAAACGATGA 18327 28 100.0 32 ............................ ATTATCAACTATGAAAAAAACAGATTGATAAG 18387 28 100.0 32 ............................ CACTGCACTGCCGATGGAGCCTAAAAGACTGC 18447 28 100.0 32 ............................ TTAACGGTATATCTTGAAAAAAGTCGTGATGA 18507 28 100.0 32 ............................ TTTTATGCCGGTGGGTTATTATGCAAGTAATG 18567 28 100.0 32 ............................ TGAATGAGCTTTAGTACGATGTGACGCCATGA 18627 28 100.0 32 ............................ TGTAATTTCCTATAATTTTCTTTACTTTTCTT 18687 28 100.0 33 ............................ ATCTTCGGTCACGTTTGTGCCGTCGTCGGTGAT 18748 28 100.0 32 ............................ ACAAGGCGATAGGCGACACCATGGCGCCCACT 18808 28 100.0 32 ............................ AAGGTAAAGCCGATAGCCAGCGATTTCAGACG 18868 28 100.0 32 ............................ TTAACCCAAATTCCCATATTGCCCGGGCCACA 18928 28 100.0 32 ............................ TCTTGAATGCCATATTTGAAATCTTATACATA 18988 28 100.0 32 ............................ AGAAAATGAACAGAAAAAAGCGATTTTGAAAG 19048 28 100.0 32 ............................ GTTTTGACGATGAACAAGAAATGCGTAATCAT 19108 28 100.0 32 ............................ AAGATAATATCTGATGTATCACATACGCGTTT 19168 28 100.0 32 ............................ ATGAAATCGTAAATGATAACATGAAAGTTTTT 19228 28 100.0 32 ............................ ATTAAGAATTTGCGGGTGATTGTCAAGGTTTG 19288 28 100.0 32 ............................ CTTGCTACCGCAAGGGCAAAACGCACTCCGAT 19348 28 100.0 32 ............................ AAAAACGGATCGGTTTCTATAATCACCTTTCT 19408 28 100.0 32 ............................ TGCTTGATACGCAATTTTTCTTTTTTTTCCTC 19468 28 100.0 32 ............................ GCGTGTGTACATAGAGGTAGGTAACAACATAA 19528 28 100.0 33 ............................ CCGTTGCCATACCCCACAATGCTTTCCATTTAA 19589 28 100.0 32 ............................ TCTATATCAATTCCTGATGTGTCTAAATCATG 19649 28 100.0 32 ............................ TTTAAACTGTGCTTTGTCAGGAATAACAATGA 19709 28 100.0 32 ............................ TTATACACAACGTTGTTTATAGATTGGGATCC 19769 28 100.0 32 ............................ ATATTAGTTGAATATAACGCCCTTAACGTTTA 19829 28 100.0 32 ............................ ATGTAAGAGTAAATAAACATGAGAAATAAAGA 19889 28 100.0 32 ............................ GCGTGCGGTTCGTATGAGGAAGCCAGTGATAA 19949 28 100.0 32 ............................ GTGGCGGAGTTGGTCTATCGAGTTAATGATGA 20009 28 100.0 32 ............................ ATGTTTTTTTGGCACCGGTGCCAATTGTCACC 20069 28 100.0 32 ............................ ATACGCGCGAGCCATAAGCATAGAGCGCCGCT 20129 28 100.0 32 ............................ TTACAAAACAAGGACTTGGGACATTCGTAAGT 20189 28 100.0 32 ............................ CAAAAGCCGACCCAAATGCTGATTAATCTGCT 20249 28 100.0 31 ............................ ACTAGAAGTTGCCCGGCTTGACTTTACAATC 20308 28 100.0 32 ............................ TACTTGACGTGGCAAAATATCAAGATGATTGA 20368 28 100.0 33 ............................ CAATAAGGTCATACAGTGCTGAATTACTTGCTG 20429 28 100.0 32 ............................ AGGAACAAAAATCTCCGGTCCTCGCTCACCGA 20489 28 100.0 32 ............................ TTCGGTCAATCCGGCAAACGCGGCCAGTAAGA 20549 28 100.0 32 ............................ TTCTTTTATTCAAAATTTCATGCAATTTATTC 20609 28 100.0 32 ............................ AAAAAAGCCTTACCGATATGACACTGACCTAT 20669 28 100.0 32 ............................ AATCGGAAAGCTGTTTAGGCTCTTCAAACGTT 20729 28 100.0 32 ............................ CTAAACCCGGCACAAGTCCGCGAAACCAGTTG 20789 28 100.0 32 ............................ ATATGATCGTGGCAATCGATCAGTTATTTAAT 20849 28 96.4 32 ................A........... GTGGAGTATAAAAGCATGCCGCCGCTTAATTT 20909 28 78.6 0 .......A.TA.......GA....A... | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.5 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNACATAATTATCAAAAGCTTCACTGCCGAATAGGCAGCTTAGAAAAAAGAAGTGGCTGAAATAATTTTAAATAGTACCTTCACTGCCGAATAGGCAGCTTAGAAAATATCTATCCCGTGCCTGGTGTGGCTTAATTTCTTCACTGCCGAATAGGCAGCTTAGAAAGTAGAATTATATAAACTATAGATATATATAAACTTCACTGCCGAATAGGCAGCTTAGAAAGTAAACAAATGCCATTGCAACATCGCCCCAAGCTTCACTGCCGAATAGGCAGCTTAGAAACTAAGATCAGCCGTGCCGCCGATTTTTCACACCTTCACTGCCGAATAGGCAGCTTAGAAATGTTTATGATTTTTTAACATTAATGTCAAACCCTTCACTGCCGAATAGGCAGCTTAGAAATATATCGATTGGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATAATTATCAAAAG # Right flank : TAATCTTCCCAAAAAAGTTAGACTAAACTCTAACAAGTTAAGGTACAGATTTTTTTATGACCTTGAATTGTCAAACCAAGTGCAACAATTTTTTAAAGTAAACCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //